Wall clock time and date at job start Tue Mar 31 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 117.00050 * 2 1 4 4 C 1.39113 * 120.06918 * 179.97438 * 3 2 1 5 5 N 1.31974 * 119.91319 * 180.02562 * 4 3 2 6 6 C 1.32243 * 120.06438 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92327 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47103 * 275.00321 * 7 6 5 9 9 C 1.46897 * 110.99754 * 170.00527 * 8 7 6 10 10 C 1.50702 * 109.46974 * 184.00076 * 9 8 7 11 11 H 1.07998 * 119.99861 * 5.35909 * 10 9 8 12 12 C 1.37880 * 119.99815 * 185.36773 * 10 9 8 13 13 N 1.31511 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99716 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47038 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46887 * 120.00106 * 14 12 10 17 17 H 1.48499 * 109.47078 * 239.99718 * 14 12 10 18 18 C 1.46902 * 110.99977 * 293.95588 * 8 7 6 19 19 C 1.54263 * 110.03051 * 268.02432 * 18 8 7 20 20 C 1.54970 * 104.15594 * 217.13746 * 19 18 8 21 21 C 1.54883 * 102.77790 * 37.89025 * 20 19 18 22 22 C 1.53875 * 110.02952 * 150.80754 * 18 8 7 23 23 C 1.38188 * 120.14780 * 0.26153 * 6 5 4 24 24 N 1.32244 * 120.08064 * 359.47505 * 23 6 5 25 25 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47128 * 300.00168 * 1 2 3 27 27 H 1.09000 * 109.46711 * 59.99801 * 1 2 3 28 28 H 1.08000 * 120.04498 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.47092 * 155.00869 * 7 6 5 30 30 H 1.08994 * 109.47454 * 35.00521 * 7 6 5 31 31 H 1.09003 * 109.47137 * 303.99776 * 9 8 7 32 32 H 1.08996 * 109.47454 * 63.99882 * 9 8 7 33 33 H 0.97009 * 119.99489 * 179.97438 * 13 12 10 34 34 H 1.08997 * 110.01820 * 29.41387 * 18 8 7 35 35 H 1.09000 * 110.48871 * 335.78386 * 19 18 8 36 36 H 1.09002 * 110.48562 * 98.43338 * 19 18 8 37 37 H 1.09005 * 110.71879 * 279.57226 * 20 19 18 38 38 H 1.09003 * 110.92238 * 156.29671 * 20 19 18 39 39 H 1.09007 * 110.48887 * 203.40413 * 21 20 19 40 40 H 1.08997 * 110.60264 * 80.81918 * 21 20 19 41 41 H 1.09001 * 110.02801 * 238.57190 * 22 18 8 42 42 H 1.09001 * 110.03390 * 359.97438 * 22 18 8 43 43 H 1.07999 * 119.95902 * 179.71935 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4341 1.2834 0.0005 5 7 4.0301 2.4609 0.0010 6 6 3.3081 3.5688 0.0005 7 6 3.9919 4.9118 0.0017 8 7 4.3201 5.2929 1.3820 9 6 5.1924 6.4746 1.4084 10 6 5.5866 6.7761 2.8314 11 1 5.2975 6.1040 3.6258 12 6 6.3162 7.9102 3.1190 13 7 6.6685 8.7284 2.1516 14 14 6.8043 8.2843 4.8829 15 1 6.2898 7.2153 5.7762 16 1 8.2845 8.3441 4.9848 17 1 6.2269 9.5906 5.2898 18 6 3.1010 5.5208 2.1693 19 6 2.7008 7.0092 2.1046 20 6 2.1632 7.3191 3.5247 21 6 3.1130 6.5030 4.4361 22 6 3.3627 5.1988 3.6510 23 6 1.9280 3.4979 0.0049 24 7 1.3248 2.3211 -0.0008 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0241 0.3788 0.0005 29 1 3.3272 5.6583 -0.4330 30 1 4.9075 4.8538 -0.5867 31 1 6.0871 6.2791 0.8172 32 1 4.6600 7.3287 0.9901 33 1 7.1815 9.5264 2.3541 34 1 2.2901 4.8993 1.7897 35 1 3.5696 7.6286 1.8822 36 1 1.9208 7.1624 1.3588 37 1 1.1346 6.9745 3.6314 38 1 2.2371 8.3841 3.7450 39 1 2.6336 6.2875 5.3911 40 1 4.0489 7.0391 4.5927 41 1 2.6782 4.4215 3.9907 42 1 4.3941 4.8730 3.7858 43 1 1.3414 4.4046 0.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231938495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:33 Heat of formation + Delta-G solvation = 36.006555 kcal Electronic energy + Delta-G solvation = -24151.294622 eV Core-core repulsion = 20811.992773 eV Total energy + Delta-G solvation = -3339.301848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27272 -38.96095 -38.22769 -34.60262 -33.88074 -32.74033 -31.13378 -28.25813 -28.06225 -27.37269 -26.73778 -24.52488 -24.37614 -22.20019 -21.66836 -19.85787 -18.51227 -18.47227 -17.78343 -16.92087 -16.30053 -15.69099 -15.31902 -15.00129 -14.72728 -14.44288 -14.27607 -14.24382 -13.51977 -13.15026 -13.03024 -12.48072 -12.28263 -11.99862 -11.75293 -11.58946 -11.40332 -11.28203 -11.02190 -10.97480 -10.78334 -10.51123 -10.42178 -10.27940 -10.20890 -9.92519 -9.52665 -9.34189 -9.07274 -8.84968 -8.55005 -8.41083 -7.18613 -6.02185 -3.99500 0.89081 1.21356 2.86506 3.29470 3.38755 3.41208 3.72094 4.08081 4.28591 4.43218 4.55511 4.95087 5.03842 5.09793 5.10499 5.30325 5.33623 5.39815 5.42380 5.47463 5.50703 5.73698 5.88350 6.01033 6.05924 6.23242 6.26287 6.35805 6.41538 6.50731 6.65573 6.68985 6.76545 6.96079 6.99543 7.01366 7.25489 7.28273 7.41156 7.54272 7.87780 7.90240 8.09310 8.17559 8.54686 9.07591 9.62495 11.09268 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.004300 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.462698 B = 6510.337535 C = 6878.072156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.304 6.304 3 C 0.256 3.744 4 C 0.046 3.954 5 N -0.384 5.384 6 C 0.068 3.932 7 C 0.106 3.894 8 N -0.522 5.522 9 C 0.186 3.814 10 C -0.506 4.506 11 H 0.085 0.915 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.882 3.118 15 H -0.270 1.270 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.093 3.907 19 C -0.166 4.166 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.104 4.104 23 C 0.093 3.907 24 N -0.497 5.497 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.173 0.827 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.028 0.972 32 H 0.010 0.990 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.088 0.912 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -11.101 -3.833 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.209 6.209 3 C 0.073 3.927 4 C -0.118 4.118 5 N -0.099 5.099 6 C -0.072 4.072 7 C -0.023 4.023 8 N -0.246 5.246 9 C 0.062 3.938 10 C -0.545 4.545 11 H 0.103 0.897 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.711 3.289 15 H -0.194 1.194 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.016 4.016 19 C -0.204 4.204 20 C -0.149 4.149 21 C -0.162 4.162 22 C -0.142 4.142 23 C -0.066 4.066 24 N -0.226 5.226 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.190 0.810 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.138 0.862 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.311 -11.610 -3.663 16.618 hybrid contribution -0.530 1.067 0.594 1.331 sum -11.841 -10.543 -3.069 16.149 Atomic orbital electron populations 1.22875 0.77365 1.02967 1.02473 1.86252 1.22826 1.23906 1.87962 1.20980 0.91259 0.85484 0.94941 1.22953 0.89381 0.97615 1.01815 1.68387 1.38336 0.97213 1.05954 1.22220 0.91489 0.95863 0.97579 1.20828 0.99463 0.88257 0.93789 1.62447 1.15019 1.39979 1.07199 1.19950 0.90645 0.84924 0.98281 1.21651 1.32632 1.06846 0.93330 0.89735 1.24921 0.96275 0.96436 0.96719 1.69960 1.39134 1.13466 1.31369 0.86687 0.78404 0.78272 0.85569 1.19411 1.21186 1.21148 1.22131 0.90667 0.94275 0.94538 1.23321 1.02050 0.99207 0.95857 1.22250 0.97224 0.99285 0.96108 1.22508 1.00587 0.96824 0.96238 1.22195 1.02167 0.96066 0.93752 1.23323 0.93319 0.94876 0.95065 1.68015 1.40053 0.98605 1.15930 0.88543 0.92275 0.92356 0.81016 0.93724 0.89191 0.95445 0.97230 0.93136 0.93041 0.86232 0.94322 0.93575 0.92598 0.94060 0.89345 0.94613 0.89357 0.81479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.40 101.05 1.05 1.40 16 2 O -0.30 -3.65 10.49 -18.74 -0.20 -3.85 16 3 C 0.26 3.52 7.49 -16.94 -0.13 3.39 16 4 C 0.05 0.64 11.18 -17.17 -0.19 0.45 16 5 N -0.38 -6.28 10.41 -9.16 -0.10 -6.37 16 6 C 0.07 1.08 5.79 -82.43 -0.48 0.61 16 7 C 0.11 1.82 5.29 -4.97 -0.03 1.79 16 8 N -0.52 -10.54 4.37 -228.18 -1.00 -11.54 16 9 C 0.19 4.44 4.19 -4.98 -0.02 4.42 16 10 C -0.51 -12.88 5.83 -34.44 -0.20 -13.08 16 11 H 0.08 2.12 3.28 -52.49 -0.17 1.95 16 12 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -25.33 13.29 55.43 0.74 -24.60 16 14 Si 0.88 20.79 28.47 -169.99 -4.84 15.95 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.09 1.73 2.71 -66.59 -0.18 1.55 16 19 C -0.17 -3.11 5.73 -25.03 -0.14 -3.26 16 20 C -0.11 -1.95 6.91 -24.70 -0.17 -2.12 16 21 C -0.12 -2.34 6.18 -25.08 -0.16 -2.49 16 22 C -0.10 -1.99 5.64 -25.61 -0.14 -2.14 16 23 C 0.09 1.32 9.16 -17.39 -0.16 1.16 16 24 N -0.50 -7.06 9.40 -13.13 -0.12 -7.18 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 27 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.04 0.70 8.03 -51.93 -0.42 0.28 16 30 H 0.09 1.59 8.01 -51.93 -0.42 1.17 16 31 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 32 H 0.01 0.26 5.78 -51.93 -0.30 -0.04 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.05 0.88 5.09 -51.93 -0.26 0.62 16 35 H 0.12 2.68 4.11 -51.93 -0.21 2.47 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.90 4.87 -51.93 -0.25 1.65 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.91 5.85 -51.93 -0.30 1.60 16 43 H 0.17 2.04 7.68 -52.49 -0.40 1.64 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -28.65 331.91 -7.65 -36.30 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.10 Total: 3.17 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.04 Total: -6.89 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.48 Total: -49.69 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.84 Total: 15.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.65 -7.65 -36.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231938495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.309 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds