Wall clock time and date at job start Tue Mar 31 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 117.00050 * 2 1 4 4 C 1.39113 * 120.06918 * 179.97438 * 3 2 1 5 5 N 1.31974 * 119.91319 * 180.02562 * 4 3 2 6 6 C 1.32243 * 120.06438 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92327 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47103 * 275.00321 * 7 6 5 9 9 C 1.46897 * 110.99754 * 170.00527 * 8 7 6 10 10 C 1.50702 * 109.46974 * 184.00076 * 9 8 7 11 11 H 1.07998 * 119.99861 * 5.35909 * 10 9 8 12 12 C 1.37880 * 119.99815 * 185.36773 * 10 9 8 13 13 N 1.31511 * 119.99967 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99716 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47038 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46887 * 120.00106 * 14 12 10 17 17 H 1.48499 * 109.47078 * 239.99718 * 14 12 10 18 18 C 1.46902 * 110.99977 * 293.95588 * 8 7 6 19 19 C 1.54263 * 110.03051 * 268.02432 * 18 8 7 20 20 C 1.54970 * 104.15594 * 217.13746 * 19 18 8 21 21 C 1.54883 * 102.77790 * 37.89025 * 20 19 18 22 22 C 1.53875 * 110.02952 * 150.80754 * 18 8 7 23 23 C 1.38188 * 120.14780 * 0.26153 * 6 5 4 24 24 N 1.32244 * 120.08064 * 359.47505 * 23 6 5 25 25 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47128 * 300.00168 * 1 2 3 27 27 H 1.09000 * 109.46711 * 59.99801 * 1 2 3 28 28 H 1.08000 * 120.04498 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.47092 * 155.00869 * 7 6 5 30 30 H 1.08994 * 109.47454 * 35.00521 * 7 6 5 31 31 H 1.09003 * 109.47137 * 303.99776 * 9 8 7 32 32 H 1.08996 * 109.47454 * 63.99882 * 9 8 7 33 33 H 0.97009 * 119.99489 * 179.97438 * 13 12 10 34 34 H 1.08997 * 110.01820 * 29.41387 * 18 8 7 35 35 H 1.09000 * 110.48871 * 335.78386 * 19 18 8 36 36 H 1.09002 * 110.48562 * 98.43338 * 19 18 8 37 37 H 1.09005 * 110.71879 * 279.57226 * 20 19 18 38 38 H 1.09003 * 110.92238 * 156.29671 * 20 19 18 39 39 H 1.09007 * 110.48887 * 203.40413 * 21 20 19 40 40 H 1.08997 * 110.60264 * 80.81918 * 21 20 19 41 41 H 1.09001 * 110.02801 * 238.57190 * 22 18 8 42 42 H 1.09001 * 110.03390 * 359.97438 * 22 18 8 43 43 H 1.07999 * 119.95902 * 179.71935 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4341 1.2834 0.0005 5 7 4.0301 2.4609 0.0010 6 6 3.3081 3.5688 0.0005 7 6 3.9919 4.9118 0.0017 8 7 4.3201 5.2929 1.3820 9 6 5.1924 6.4746 1.4084 10 6 5.5866 6.7761 2.8314 11 1 5.2975 6.1040 3.6258 12 6 6.3162 7.9102 3.1190 13 7 6.6685 8.7284 2.1516 14 14 6.8043 8.2843 4.8829 15 1 6.2898 7.2153 5.7762 16 1 8.2845 8.3441 4.9848 17 1 6.2269 9.5906 5.2898 18 6 3.1010 5.5208 2.1693 19 6 2.7008 7.0092 2.1046 20 6 2.1632 7.3191 3.5247 21 6 3.1130 6.5030 4.4361 22 6 3.3627 5.1988 3.6510 23 6 1.9280 3.4979 0.0049 24 7 1.3248 2.3211 -0.0008 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0241 0.3788 0.0005 29 1 3.3272 5.6583 -0.4330 30 1 4.9075 4.8538 -0.5867 31 1 6.0871 6.2791 0.8172 32 1 4.6600 7.3287 0.9901 33 1 7.1815 9.5264 2.3541 34 1 2.2901 4.8993 1.7897 35 1 3.5696 7.6286 1.8822 36 1 1.9208 7.1624 1.3588 37 1 1.1346 6.9745 3.6314 38 1 2.2371 8.3841 3.7450 39 1 2.6336 6.2875 5.3911 40 1 4.0489 7.0391 4.5927 41 1 2.6782 4.4215 3.9907 42 1 4.3941 4.8730 3.7858 43 1 1.3414 4.4046 0.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231938495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:32 Heat of formation + Delta-G solvation = 15.483941 kcal Electronic energy + Delta-G solvation = -24152.184549 eV Core-core repulsion = 20811.992773 eV Total energy + Delta-G solvation = -3340.191775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37333 -40.36987 -39.32929 -36.01767 -35.06071 -34.66029 -32.44924 -29.61057 -29.50766 -28.90828 -27.95913 -25.85432 -25.58179 -23.84682 -23.05243 -21.32924 -19.95985 -19.47314 -18.95392 -18.74981 -17.30951 -16.97528 -16.83095 -16.54005 -16.17077 -15.77686 -15.53319 -15.30320 -14.89804 -14.65303 -14.53459 -14.00661 -13.75907 -13.26898 -13.12039 -12.93359 -12.79829 -12.61448 -12.48803 -12.43492 -12.21861 -12.00286 -11.97131 -11.77602 -11.64744 -11.64265 -11.13983 -10.96001 -10.66014 -10.48098 -10.22123 -9.63952 -8.80909 -8.07630 -6.08809 -0.20281 0.09062 1.39935 1.44204 1.53378 1.93527 2.45249 2.60085 3.07463 3.15223 3.28299 3.39296 3.55179 3.93175 3.96791 3.99357 4.14076 4.29441 4.41942 4.44933 4.49879 4.54046 4.67690 4.69056 4.75442 4.78604 4.87580 4.95564 5.01453 5.08132 5.15221 5.20753 5.25815 5.32690 5.39125 5.57751 5.72973 5.86464 5.93430 5.99533 6.18618 6.22832 6.45382 6.73922 6.80481 7.06593 7.56961 9.04476 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.004300 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.462698 B = 6510.337535 C = 6878.072156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.260 3.740 4 C 0.043 3.957 5 N -0.412 5.412 6 C 0.052 3.948 7 C 0.110 3.890 8 N -0.532 5.532 9 C 0.202 3.798 10 C -0.499 4.499 11 H 0.089 0.911 12 C 0.010 3.990 13 N -0.936 5.936 14 Si 0.936 3.064 15 H -0.259 1.259 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.095 3.905 19 C -0.164 4.164 20 C -0.105 4.105 21 C -0.126 4.126 22 C -0.103 4.103 23 C 0.099 3.901 24 N -0.500 5.500 25 H 0.128 0.872 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.196 0.804 29 H 0.061 0.939 30 H 0.074 0.926 31 H -0.007 1.007 32 H -0.004 1.004 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 -12.724 -3.129 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.211 6.211 3 C 0.077 3.923 4 C -0.121 4.121 5 N -0.128 5.128 6 C -0.087 4.087 7 C -0.019 4.019 8 N -0.256 5.256 9 C 0.077 3.923 10 C -0.537 4.537 11 H 0.107 0.893 12 C -0.187 4.187 13 N -0.579 5.579 14 Si 0.763 3.237 15 H -0.183 1.183 16 H -0.216 1.216 17 H -0.209 1.209 18 C -0.014 4.014 19 C -0.203 4.203 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.141 4.141 23 C -0.059 4.059 24 N -0.230 5.230 25 H 0.146 0.854 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.213 0.787 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.011 0.989 32 H 0.014 0.986 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.877 -13.254 -2.952 19.415 hybrid contribution 0.180 1.409 0.321 1.457 sum -13.697 -11.844 -2.631 18.298 Atomic orbital electron populations 1.23160 0.75528 1.05132 1.02389 1.86265 1.24587 1.22845 1.87386 1.21127 0.91447 0.85984 0.93755 1.23309 0.90007 0.97580 1.01196 1.68304 1.39555 0.98148 1.06749 1.21950 0.92183 0.94945 0.99653 1.20755 0.99449 0.89834 0.91912 1.62283 1.15945 1.37906 1.09475 1.19592 0.90022 0.85907 0.96797 1.21945 1.31293 1.06278 0.94169 0.89330 1.25582 0.96696 0.96632 0.99794 1.70081 1.40523 1.14085 1.33168 0.85839 0.77595 0.78290 0.82019 1.18329 1.21634 1.20907 1.22194 0.90409 0.94651 0.94112 1.23192 1.01190 0.98368 0.97513 1.22250 0.98449 0.98987 0.94641 1.22468 0.99720 0.96449 0.97723 1.22160 1.00820 0.96787 0.94318 1.23521 0.92592 0.95737 0.94051 1.68100 1.39955 0.98655 1.16249 0.85369 0.92512 0.92219 0.78674 0.92107 0.90717 0.98916 0.98622 0.93392 0.90740 0.90311 0.91972 0.90485 0.93021 0.91712 0.92499 0.92530 0.92336 0.79357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.40 113.37 1.18 1.66 16 2 O -0.31 -6.49 10.49 -89.98 -0.94 -7.44 16 3 C 0.26 6.54 7.49 84.80 0.64 7.18 16 4 C 0.04 1.13 11.18 84.88 0.95 2.08 16 5 N -0.41 -13.16 10.41 -182.89 -1.90 -15.06 16 6 C 0.05 1.58 5.79 42.49 0.25 1.83 16 7 C 0.11 3.77 5.29 85.56 0.45 4.22 16 8 N -0.53 -21.64 4.37 -875.82 -3.82 -25.46 16 9 C 0.20 10.02 4.19 85.56 0.36 10.38 16 10 C -0.50 -26.02 5.83 25.60 0.15 -25.87 16 11 H 0.09 4.52 3.28 -2.91 -0.01 4.51 16 12 C 0.01 0.54 5.46 84.66 0.46 1.00 16 13 N -0.94 -54.59 13.29 21.45 0.28 -54.31 16 14 Si 0.94 43.42 28.47 68.60 1.95 45.37 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 C 0.09 3.39 2.71 45.64 0.12 3.52 16 19 C -0.16 -5.94 5.73 31.70 0.18 -5.76 16 20 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 21 C -0.13 -4.52 6.18 31.67 0.20 -4.33 16 22 C -0.10 -3.78 5.64 31.32 0.18 -3.60 16 23 C 0.10 2.59 9.16 84.62 0.78 3.37 16 24 N -0.50 -12.90 9.40 -308.20 -2.90 -15.80 16 25 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 0.88 8.11 -2.39 -0.02 0.87 16 27 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 28 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.06 1.87 8.03 -2.39 -0.02 1.85 16 30 H 0.07 2.75 8.01 -2.39 -0.02 2.73 16 31 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 16 32 H 0.00 -0.19 5.78 -2.39 -0.01 -0.20 16 33 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 34 H 0.07 2.33 5.09 -2.39 -0.01 2.32 16 35 H 0.08 3.58 4.11 -2.39 -0.01 3.57 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.06 2.40 4.87 -2.39 -0.01 2.39 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 2.50 5.85 -2.39 -0.01 2.49 16 43 H 0.19 3.97 7.68 -2.91 -0.02 3.95 16 Total: -1.00 -62.97 331.91 -0.21 -63.17 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.02 Total: 17.09 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.11 Total: -7.57 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -8.34 Total: -110.63 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.94 Total: -7.44 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.95 Total: 45.37 kcal Total: -62.97 -0.21 -63.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231938495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.656 kcal (2) G-P(sol) polarization free energy of solvation -62.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds