Wall clock time and date at job start Tue Mar 31 2020 07:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99744 * 2 1 4 4 C 1.50699 * 109.47243 * 66.04621 * 3 2 1 5 5 H 1.08010 * 119.99698 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00473 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99692 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00338 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47457 * 59.99587 * 8 6 4 10 10 H 1.48501 * 109.47345 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47043 * 299.99568 * 8 6 4 12 12 C 1.46901 * 111.00029 * 236.05153 * 2 1 3 13 13 C 1.50697 * 109.46709 * 293.94991 * 12 2 1 14 14 C 1.38071 * 119.57625 * 95.00437 * 13 12 2 15 15 C 1.38834 * 119.32783 * 179.97438 * 14 13 12 16 16 C 1.38341 * 118.50991 * 359.97438 * 15 14 13 17 17 C 1.39096 * 119.09610 * 0.02562 * 16 15 14 18 18 N 1.39011 * 119.70259 * 179.97438 * 17 16 15 19 19 C 1.47024 * 110.99085 * 56.32510 * 18 17 16 20 20 C 1.53103 * 109.24985 * 182.34818 * 19 18 17 21 21 O 1.43012 * 109.29295 * 303.21723 * 20 19 18 22 22 C 1.43011 * 113.74271 * 58.65008 * 21 20 19 23 23 C 1.47018 * 110.99718 * 179.97438 * 18 17 16 24 24 N 1.31949 * 119.57283 * 275.23156 * 13 12 2 25 25 H 1.09001 * 109.47249 * 183.95202 * 1 2 3 26 26 H 1.09006 * 109.47426 * 303.95022 * 1 2 3 27 27 H 1.09001 * 109.47401 * 63.95389 * 1 2 3 28 28 H 1.09001 * 109.47347 * 186.04558 * 3 2 1 29 29 H 1.09005 * 109.47315 * 306.04911 * 3 2 1 30 30 H 0.96998 * 120.00152 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46750 * 173.95519 * 12 2 1 32 32 H 1.08993 * 109.47466 * 53.94834 * 12 2 1 33 33 H 1.07999 * 120.32822 * 359.95250 * 14 13 12 34 34 H 1.08007 * 120.74164 * 180.02562 * 15 14 13 35 35 H 1.08000 * 120.44859 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47369 * 62.43543 * 19 18 17 37 37 H 1.08998 * 109.54483 * 302.29751 * 19 18 17 38 38 H 1.09002 * 109.50635 * 183.25881 * 20 19 18 39 39 H 1.09003 * 109.50698 * 63.17493 * 20 19 18 40 40 H 1.08997 * 109.50806 * 61.26171 * 22 21 20 41 41 H 1.08997 * 109.50924 * 181.35636 * 22 21 20 42 42 H 1.08994 * 109.50209 * 57.67663 * 23 18 17 43 43 H 1.09003 * 109.54070 * 297.56628 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5115 2.0485 6 6 2.0266 3.3495 1.5285 7 7 2.7117 4.0020 0.6150 8 14 1.5827 4.1868 3.1383 9 1 2.1755 3.4297 4.2700 10 1 2.1147 5.5733 3.1383 11 1 0.1056 4.2230 3.2866 12 6 1.9954 -0.7659 -1.1377 13 6 1.6369 -2.2203 -0.9729 14 6 0.5028 -2.7162 -1.5847 15 6 0.1777 -4.0570 -1.4299 16 6 1.0088 -4.8537 -0.6628 17 6 2.1353 -4.2874 -0.0754 18 7 2.9788 -5.0762 0.6984 19 6 3.4653 -6.2340 -0.0660 20 6 4.3411 -7.1046 0.8391 21 8 5.4104 -6.3136 1.3646 22 6 4.9716 -5.1783 2.1155 23 6 4.1035 -4.2877 1.2226 24 7 2.4085 -3.0024 -0.2422 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.5739 0.8525 27 1 -0.3634 0.4512 -0.9233 28 1 3.0796 1.3445 -0.1082 29 1 1.5609 1.9275 -0.8309 30 1 2.9862 4.9181 0.7770 31 1 3.0797 -0.6610 -1.1756 32 1 1.5611 -0.3872 -2.0628 33 1 -0.1251 -2.0674 -2.1773 34 1 -0.7038 -4.4691 -1.8986 35 1 0.7859 -5.9010 -0.5220 36 1 4.0525 -5.8873 -0.9164 37 1 2.6170 -6.8182 -0.4226 38 1 4.7510 -7.9330 0.2613 39 1 3.7401 -7.4957 1.6601 40 1 4.3886 -5.5127 2.9735 41 1 5.8376 -4.6139 2.4614 42 1 3.7203 -3.4508 1.8063 43 1 4.7016 -3.9097 0.3934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237846162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:57 Heat of formation + Delta-G solvation = 16.076675 kcal Electronic energy + Delta-G solvation = -23314.590511 eV Core-core repulsion = 19974.424438 eV Total energy + Delta-G solvation = -3340.166073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81492 -39.19136 -36.76479 -35.54167 -32.79712 -32.36247 -31.28745 -30.75835 -27.72953 -26.90617 -26.70853 -24.68220 -23.74914 -22.66768 -21.58040 -20.60723 -20.18558 -17.65896 -16.62584 -16.32572 -16.06661 -15.96415 -15.35987 -15.26106 -14.99378 -14.88922 -14.50223 -14.27434 -13.84693 -13.78235 -13.18694 -13.01043 -12.60411 -12.33471 -11.94364 -11.89106 -11.64477 -11.54827 -11.36778 -11.06159 -10.89854 -10.86257 -10.68202 -10.48748 -10.18538 -9.91819 -9.75964 -9.49512 -9.30355 -9.14047 -8.42408 -8.07518 -7.25223 -6.01521 -4.02653 1.21594 1.41647 3.30743 3.34901 3.38662 3.42090 3.65944 3.87535 4.35700 4.45127 4.63520 4.78587 4.84390 4.90899 4.97576 5.11613 5.13255 5.16543 5.26237 5.27610 5.34993 5.39814 5.42496 5.54891 5.71508 5.80119 5.86256 5.99125 6.04761 6.11719 6.20814 6.26913 6.31708 6.51728 6.62723 6.74249 6.91056 7.13175 7.27565 7.31863 7.79539 8.07067 8.18087 8.23729 8.53642 9.04252 9.61220 11.09404 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003759 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.062950 B = 7446.414807 C = 8545.802495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.529 5.529 3 C 0.195 3.805 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.099 3.901 13 C 0.184 3.816 14 C -0.195 4.195 15 C -0.056 4.056 16 C -0.197 4.197 17 C 0.307 3.693 18 N -0.477 5.477 19 C 0.022 3.978 20 C 0.065 3.935 21 O -0.386 6.386 22 C 0.060 3.940 23 C 0.030 3.970 24 N -0.496 5.496 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.012 0.988 28 H 0.032 0.968 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 -21.670 -3.909 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.254 5.254 3 C 0.070 3.930 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.030 4.030 13 C 0.044 3.956 14 C -0.216 4.216 15 C -0.082 4.082 16 C -0.220 4.220 17 C 0.076 3.924 18 N -0.195 5.195 19 C -0.104 4.104 20 C -0.013 4.013 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.097 4.097 24 N -0.210 5.210 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.035 -21.612 -2.705 21.781 hybrid contribution -1.279 0.987 -0.811 1.808 sum -1.314 -20.625 -3.515 20.964 Atomic orbital electron populations 1.22281 0.88910 0.99557 1.00608 1.62085 1.06889 1.17740 1.38664 1.19755 0.95516 0.80991 0.96750 1.21105 1.34882 0.96847 1.01661 0.91936 1.24973 0.95293 0.97299 0.96985 1.69947 1.38340 1.11507 1.34109 0.86553 0.78668 0.78308 0.83832 1.20143 1.21347 1.20302 1.20986 1.01476 0.87067 0.93480 1.21138 0.89580 0.95624 0.89229 1.21891 0.99259 0.96190 1.04294 1.21346 0.98032 0.93351 0.95500 1.21405 0.96510 1.01274 1.02790 1.19759 0.92589 0.89411 0.90671 1.59429 1.18573 1.08830 1.32673 1.22940 0.99622 0.92001 0.95864 1.22663 0.88827 0.93010 0.96775 1.87994 1.31814 1.39698 1.70920 1.22823 0.98831 0.86614 0.93400 1.22682 0.90805 0.96406 0.99828 1.67417 1.32516 1.04046 1.17058 0.93740 0.90619 0.96969 0.95027 0.99008 0.92866 0.89616 0.94080 0.85126 0.84988 0.85228 0.92849 0.88994 0.88096 0.92065 0.92217 0.87792 0.87883 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.02 60.06 0.54 1.24 16 2 N -0.53 -11.77 4.74 -245.82 -1.17 -12.93 16 3 C 0.19 5.13 4.72 -4.97 -0.02 5.10 16 4 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 5 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.10 1.85 5.28 -4.98 -0.03 1.83 16 13 C 0.18 3.09 5.64 -82.60 -0.47 2.62 16 14 C -0.19 -2.70 8.35 -39.42 -0.33 -3.03 16 15 C -0.06 -0.66 10.16 -39.32 -0.40 -1.06 16 16 C -0.20 -2.40 9.23 -39.23 -0.36 -2.77 16 17 C 0.31 4.50 6.40 -155.01 -0.99 3.51 16 18 N -0.48 -6.15 4.75 -172.88 -0.82 -6.97 16 19 C 0.02 0.22 5.40 -3.70 -0.02 0.20 16 20 C 0.06 0.57 7.01 37.21 0.26 0.83 16 21 O -0.39 -4.42 10.83 -35.23 -0.38 -4.80 16 22 C 0.06 0.66 7.01 37.21 0.26 0.92 16 23 C 0.03 0.40 4.82 -3.71 -0.02 0.38 16 24 N -0.50 -8.55 8.62 -8.66 -0.07 -8.63 16 25 H 0.04 0.80 6.40 -51.93 -0.33 0.46 16 26 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.03 0.89 7.93 -51.93 -0.41 0.48 16 29 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.09 1.66 7.93 -51.93 -0.41 1.25 16 32 H 0.04 0.71 8.02 -51.93 -0.42 0.30 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.13 1.24 7.19 -52.49 -0.38 0.86 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.72 6.83 -51.93 -0.35 0.37 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 1.57 7.85 -51.93 -0.41 1.16 16 43 H 0.06 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -32.18 345.50 -10.28 -42.45 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.79 Total: -1.62 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.96 Total: -3.42 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -1.33 Total: -54.65 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.38 Total: -4.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.18 -10.28 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237846162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.531 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds