Wall clock time and date at job start Tue Mar 31 2020 07:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99744 * 2 1 4 4 C 1.50699 * 109.47243 * 66.04621 * 3 2 1 5 5 H 1.08010 * 119.99698 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00473 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99692 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00338 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47457 * 59.99587 * 8 6 4 10 10 H 1.48501 * 109.47345 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47043 * 299.99568 * 8 6 4 12 12 C 1.46901 * 111.00029 * 236.05153 * 2 1 3 13 13 C 1.50697 * 109.46709 * 293.94991 * 12 2 1 14 14 C 1.38071 * 119.57625 * 95.00437 * 13 12 2 15 15 C 1.38834 * 119.32783 * 179.97438 * 14 13 12 16 16 C 1.38341 * 118.50991 * 359.97438 * 15 14 13 17 17 C 1.39096 * 119.09610 * 0.02562 * 16 15 14 18 18 N 1.39011 * 119.70259 * 179.97438 * 17 16 15 19 19 C 1.47024 * 110.99085 * 56.32510 * 18 17 16 20 20 C 1.53103 * 109.24985 * 182.34818 * 19 18 17 21 21 O 1.43012 * 109.29295 * 303.21723 * 20 19 18 22 22 C 1.43011 * 113.74271 * 58.65008 * 21 20 19 23 23 C 1.47018 * 110.99718 * 179.97438 * 18 17 16 24 24 N 1.31949 * 119.57283 * 275.23156 * 13 12 2 25 25 H 1.09001 * 109.47249 * 183.95202 * 1 2 3 26 26 H 1.09006 * 109.47426 * 303.95022 * 1 2 3 27 27 H 1.09001 * 109.47401 * 63.95389 * 1 2 3 28 28 H 1.09001 * 109.47347 * 186.04558 * 3 2 1 29 29 H 1.09005 * 109.47315 * 306.04911 * 3 2 1 30 30 H 0.96998 * 120.00152 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46750 * 173.95519 * 12 2 1 32 32 H 1.08993 * 109.47466 * 53.94834 * 12 2 1 33 33 H 1.07999 * 120.32822 * 359.95250 * 14 13 12 34 34 H 1.08007 * 120.74164 * 180.02562 * 15 14 13 35 35 H 1.08000 * 120.44859 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47369 * 62.43543 * 19 18 17 37 37 H 1.08998 * 109.54483 * 302.29751 * 19 18 17 38 38 H 1.09002 * 109.50635 * 183.25881 * 20 19 18 39 39 H 1.09003 * 109.50698 * 63.17493 * 20 19 18 40 40 H 1.08997 * 109.50806 * 61.26171 * 22 21 20 41 41 H 1.08997 * 109.50924 * 181.35636 * 22 21 20 42 42 H 1.08994 * 109.50209 * 57.67663 * 23 18 17 43 43 H 1.09003 * 109.54070 * 297.56628 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0738 1.5115 2.0485 6 6 2.0266 3.3495 1.5285 7 7 2.7117 4.0020 0.6150 8 14 1.5827 4.1868 3.1383 9 1 2.1755 3.4297 4.2700 10 1 2.1147 5.5733 3.1383 11 1 0.1056 4.2230 3.2866 12 6 1.9954 -0.7659 -1.1377 13 6 1.6369 -2.2203 -0.9729 14 6 0.5028 -2.7162 -1.5847 15 6 0.1777 -4.0570 -1.4299 16 6 1.0088 -4.8537 -0.6628 17 6 2.1353 -4.2874 -0.0754 18 7 2.9788 -5.0762 0.6984 19 6 3.4653 -6.2340 -0.0660 20 6 4.3411 -7.1046 0.8391 21 8 5.4104 -6.3136 1.3646 22 6 4.9716 -5.1783 2.1155 23 6 4.1035 -4.2877 1.2226 24 7 2.4085 -3.0024 -0.2422 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.5739 0.8525 27 1 -0.3634 0.4512 -0.9233 28 1 3.0796 1.3445 -0.1082 29 1 1.5609 1.9275 -0.8309 30 1 2.9862 4.9181 0.7770 31 1 3.0797 -0.6610 -1.1756 32 1 1.5611 -0.3872 -2.0628 33 1 -0.1251 -2.0674 -2.1773 34 1 -0.7038 -4.4691 -1.8986 35 1 0.7859 -5.9010 -0.5220 36 1 4.0525 -5.8873 -0.9164 37 1 2.6170 -6.8182 -0.4226 38 1 4.7510 -7.9330 0.2613 39 1 3.7401 -7.4957 1.6601 40 1 4.3886 -5.5127 2.9735 41 1 5.8376 -4.6139 2.4614 42 1 3.7203 -3.4508 1.8063 43 1 4.7016 -3.9097 0.3934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237846162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:57 Heat of formation + Delta-G solvation = -6.795164 kcal Electronic energy + Delta-G solvation = -23315.582308 eV Core-core repulsion = 19974.424438 eV Total energy + Delta-G solvation = -3341.157870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84293 -40.17184 -38.30477 -36.66430 -34.74883 -33.58002 -32.17348 -31.99092 -29.39905 -28.52267 -27.81932 -26.08755 -25.05107 -23.66543 -23.05901 -21.80838 -21.51567 -18.74993 -18.41565 -17.61539 -16.99601 -16.92302 -16.86482 -16.44322 -16.17044 -15.90564 -15.86387 -15.76809 -15.35202 -15.11965 -14.32838 -14.21948 -13.99047 -13.69149 -13.41503 -13.26523 -12.95632 -12.89784 -12.65876 -12.56391 -12.49153 -12.40295 -12.30921 -11.90584 -11.69763 -11.38982 -11.17541 -10.75348 -10.63282 -10.48564 -10.34299 -9.15086 -9.02137 -8.21837 -6.32291 0.13656 0.40707 1.39675 1.43369 1.51298 2.35470 2.39270 2.75344 2.88454 3.10456 3.25962 3.47402 3.79550 3.89961 3.92449 4.08021 4.12096 4.19658 4.22673 4.25213 4.30584 4.42789 4.46445 4.53727 4.61500 4.68803 4.69582 4.78441 4.82875 4.92685 4.94073 5.01531 5.05783 5.13731 5.23308 5.28526 5.51081 5.61407 5.63882 6.01220 6.09373 6.10983 6.28560 6.55633 6.82394 7.13266 7.37091 8.89102 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003759 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.062950 B = 7446.414807 C = 8545.802495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.543 5.543 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.104 3.896 13 C 0.155 3.845 14 C -0.194 4.194 15 C -0.045 4.045 16 C -0.186 4.186 17 C 0.287 3.713 18 N -0.478 5.478 19 C 0.022 3.978 20 C 0.062 3.938 21 O -0.402 6.402 22 C 0.068 3.932 23 C 0.036 3.964 24 N -0.535 5.535 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.021 0.979 28 H 0.000 1.000 29 H -0.030 1.030 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.165 0.835 36 H 0.039 0.961 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 -24.268 -3.601 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.267 5.267 3 C 0.085 3.915 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.025 4.025 13 C 0.017 3.983 14 C -0.216 4.216 15 C -0.071 4.071 16 C -0.208 4.208 17 C 0.056 3.944 18 N -0.197 5.197 19 C -0.104 4.104 20 C -0.015 4.015 21 O -0.320 6.320 22 C -0.009 4.009 23 C -0.091 4.091 24 N -0.250 5.250 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.019 0.981 29 H -0.013 1.013 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.164 0.836 34 H 0.194 0.806 35 H 0.182 0.818 36 H 0.058 0.942 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.956 -24.238 -2.410 24.436 hybrid contribution -0.677 1.670 -0.972 2.047 sum -2.633 -22.568 -3.382 22.972 Atomic orbital electron populations 1.22204 0.87294 1.00781 1.00175 1.61944 1.08418 1.15323 1.41044 1.19375 0.93540 0.83225 0.95360 1.21394 1.35136 0.97512 1.02316 0.92215 1.25900 0.94903 0.97925 1.00742 1.70074 1.39161 1.11947 1.36218 0.85431 0.78933 0.77192 0.79030 1.19618 1.20565 1.19024 1.20895 1.00076 0.88817 0.92698 1.20811 0.91569 0.94287 0.91661 1.22060 0.98050 0.97739 1.03719 1.21817 0.98832 0.92044 0.94406 1.21820 0.94958 1.02915 1.01093 1.20178 0.93995 0.88846 0.91421 1.59566 1.18089 1.09080 1.32916 1.23104 1.00718 0.91145 0.95407 1.22918 0.88384 0.92959 0.97227 1.87975 1.33254 1.39721 1.71083 1.22769 0.98778 0.86409 0.92952 1.22509 0.91099 0.96452 0.99075 1.67257 1.33784 1.05737 1.18199 0.91287 0.92541 0.96022 0.98141 1.01276 0.92579 0.91874 0.92840 0.83604 0.80644 0.81795 0.94208 0.86179 0.85370 0.90922 0.91277 0.87050 0.90715 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.75 9.02 127.69 1.15 2.90 16 2 N -0.54 -25.10 4.74 -931.64 -4.42 -29.52 16 3 C 0.21 11.73 4.72 85.56 0.40 12.13 16 4 C -0.53 -30.83 8.46 25.60 0.22 -30.62 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.20 5.46 84.65 0.46 0.66 16 7 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 8 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.10 4.07 5.28 85.56 0.45 4.52 16 13 C 0.15 5.24 5.64 42.50 0.24 5.48 16 14 C -0.19 -4.96 8.35 22.37 0.19 -4.78 16 15 C -0.05 -0.88 10.16 22.44 0.23 -0.65 16 16 C -0.19 -3.87 9.23 22.50 0.21 -3.66 16 17 C 0.29 8.13 6.40 133.04 0.85 8.98 16 18 N -0.48 -11.91 4.75 -700.86 -3.33 -15.24 16 19 C 0.02 0.39 5.40 86.31 0.47 0.85 16 20 C 0.06 0.93 7.01 72.02 0.50 1.43 16 21 O -0.40 -8.72 10.83 -148.98 -1.61 -10.34 16 22 C 0.07 1.48 7.01 72.02 0.50 1.98 16 23 C 0.04 1.01 4.82 86.31 0.42 1.43 16 24 N -0.53 -18.87 8.62 -181.33 -1.56 -20.43 16 25 H 0.07 2.40 6.40 -2.39 -0.02 2.39 16 26 H 0.06 2.45 6.76 -2.38 -0.02 2.44 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.00 0.03 7.93 -2.39 -0.02 0.01 16 29 H -0.03 -1.78 8.12 -2.38 -0.02 -1.80 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.06 2.68 7.93 -2.39 -0.02 2.66 16 32 H 0.05 1.92 8.02 -2.39 -0.02 1.90 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.16 2.25 7.19 -2.91 -0.02 2.23 16 36 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.12 1.41 6.83 -2.39 -0.02 1.39 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.07 2.46 7.85 -2.39 -0.02 2.44 16 43 H 0.04 1.17 8.03 -2.39 -0.02 1.15 16 Total: -1.00 -72.89 345.50 -1.34 -74.23 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.98 Total: 10.32 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.29 Total: 0.66 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -9.03 Total: -122.13 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.61 Total: -10.34 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.89 -1.34 -74.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237846162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.436 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds