Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35760 * 119.62471 * 2 1 4 4 C 1.50698 * 119.65093 * 0.02562 * 3 2 1 5 5 N 1.46897 * 109.47242 * 294.99840 * 4 3 2 6 6 C 1.46965 * 110.99710 * 293.79933 * 5 4 3 7 7 C 1.53052 * 109.36267 * 176.81271 * 6 5 4 8 8 N 1.46956 * 109.36644 * 58.39492 * 7 6 5 9 9 C 1.46904 * 110.99637 * 176.80899 * 8 7 6 10 10 C 1.50694 * 109.47392 * 293.80366 * 9 8 7 11 11 H 1.07997 * 120.00250 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00009 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00132 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46925 * 60.00084 * 14 12 10 16 16 H 1.48499 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47174 * 300.00061 * 14 12 10 18 18 C 1.46948 * 110.88381 * 300.68015 * 8 7 6 19 19 C 1.46956 * 111.00491 * 169.99893 * 5 4 3 20 20 C 1.35357 * 120.70423 * 180.02562 * 3 2 1 21 21 C 1.40201 * 119.94543 * 359.97438 * 20 3 2 22 22 C 1.36400 * 119.26462 * 359.97438 * 21 20 3 23 23 C 1.34658 * 119.62656 * 179.73774 * 2 1 3 24 24 O 1.22066 * 119.98287 * 359.97057 * 23 2 1 25 25 H 1.09002 * 109.47391 * 89.99480 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99536 * 1 2 3 27 27 H 1.09004 * 109.47041 * 209.99663 * 1 2 3 28 28 H 1.09001 * 109.47183 * 54.99475 * 4 3 2 29 29 H 1.09000 * 109.47444 * 174.99750 * 4 3 2 30 30 H 1.09001 * 109.48636 * 296.77388 * 6 5 4 31 31 H 1.09001 * 109.48949 * 56.83992 * 6 5 4 32 32 H 1.09008 * 109.48578 * 298.43028 * 7 6 5 33 33 H 1.08998 * 109.50696 * 178.37896 * 7 6 5 34 34 H 1.09000 * 109.46767 * 53.80586 * 9 8 7 35 35 H 1.09007 * 109.46912 * 173.80049 * 9 8 7 36 36 H 0.96998 * 120.00031 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.49114 * 299.35139 * 18 8 7 38 38 H 1.08999 * 109.49117 * 179.28473 * 18 8 7 39 39 H 1.09002 * 109.48644 * 303.15423 * 19 5 4 40 40 H 1.08994 * 109.48762 * 63.21847 * 19 5 4 41 41 H 1.07999 * 120.02588 * 180.02562 * 20 3 2 42 42 H 1.07996 * 120.36357 * 180.02562 * 21 20 3 43 43 H 1.08002 * 120.34612 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1801 0.0000 4 6 1.3661 2.4756 0.0006 5 7 0.6124 2.5978 -1.2543 6 6 1.5196 2.7345 -2.4024 7 6 0.7001 2.7789 -3.6943 8 7 -0.2429 3.9044 -3.6347 9 6 -0.9966 4.0266 -4.8898 10 6 -0.0574 4.4084 -6.0047 11 1 0.9942 4.5470 -5.8013 12 6 -0.5408 4.5820 -7.2843 13 7 -1.8216 4.4148 -7.5316 14 14 0.6233 5.0560 -8.6662 15 1 1.6663 4.0096 -8.8156 16 1 -0.1389 5.1805 -9.9346 17 1 1.2677 6.3552 -8.3469 18 6 -1.1500 3.7677 -2.4868 19 6 -0.3306 3.7234 -1.1949 20 6 3.4894 1.2056 -0.0005 21 6 4.2120 0.0042 -0.0005 22 6 3.5360 -1.1805 0.0005 23 6 2.1307 -1.1705 0.0054 24 8 1.5131 -2.2234 0.0107 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8901 0.5138 28 1 0.6741 2.4866 0.8426 29 1 2.0606 3.3110 0.0901 30 1 2.0939 3.6557 -2.3043 31 1 2.1995 1.8830 -2.4320 32 1 0.1467 1.8464 -3.8060 33 1 1.3687 2.9091 -4.5451 34 1 -1.4696 3.0729 -5.1237 35 1 -1.7622 4.7948 -4.7805 36 1 -2.1616 4.5365 -8.4319 37 1 -1.7244 2.8466 -2.5849 38 1 -1.8299 4.6192 -2.4571 39 1 -0.9995 3.5929 -0.3442 40 1 0.2228 4.6558 -1.0831 41 1 4.0121 2.1507 -0.0001 42 1 5.2919 0.0167 -0.0005 43 1 4.0751 -2.1163 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248807912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = 17.403736 kcal Electronic energy + Delta-G solvation = -23743.508160 eV Core-core repulsion = 20403.399633 eV Total energy + Delta-G solvation = -3340.108527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53153 -38.96244 -37.15978 -35.26031 -34.53286 -32.59941 -30.97949 -30.47558 -28.34580 -27.63986 -26.28764 -24.26573 -23.25494 -22.79075 -21.97928 -21.36021 -19.32541 -17.41667 -17.39519 -16.48066 -16.34719 -16.18603 -15.58329 -14.92235 -14.66751 -14.57199 -14.56037 -14.31097 -13.75812 -13.40057 -13.32466 -13.10172 -12.73974 -12.50277 -12.29549 -12.10429 -11.95251 -11.69888 -11.58249 -11.21473 -10.95745 -10.83315 -10.70578 -10.50177 -10.38071 -10.14512 -9.99951 -9.79121 -9.24769 -8.49690 -8.42369 -8.00899 -7.31752 -6.06098 -4.08003 0.69051 1.73238 2.60021 3.31030 3.35464 3.37773 3.50564 3.82888 4.17756 4.38934 4.54783 4.69427 4.84302 4.92445 5.06270 5.08809 5.14572 5.28618 5.29659 5.34741 5.39453 5.41662 5.58943 5.67317 5.71912 5.77662 5.86515 5.93987 5.96826 6.05012 6.13991 6.31057 6.37823 6.46791 6.60323 6.88712 6.95956 7.06535 7.25576 7.30250 7.74586 7.97950 8.02771 8.13537 8.49013 8.98910 9.56489 11.04729 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.003647 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.873666 B = 7674.910322 C = 8033.988396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.479 5.479 3 C 0.182 3.818 4 C 0.080 3.920 5 N -0.537 5.537 6 C 0.057 3.943 7 C 0.068 3.932 8 N -0.537 5.537 9 C 0.194 3.806 10 C -0.510 4.510 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.056 3.944 19 C 0.062 3.938 20 C -0.238 4.238 21 C -0.012 4.012 22 C -0.253 4.253 23 C 0.511 3.489 24 O -0.559 6.559 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.088 0.912 34 H -0.008 1.008 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.142 0.858 42 H 0.133 0.867 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.431 -3.816 18.210 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.188 5.188 3 C 0.071 3.929 4 C -0.049 4.049 5 N -0.263 5.263 6 C -0.070 4.070 7 C -0.060 4.060 8 N -0.263 5.263 9 C 0.069 3.931 10 C -0.548 4.548 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.073 4.073 19 C -0.066 4.066 20 C -0.261 4.261 21 C -0.034 4.034 22 C -0.275 4.275 23 C 0.314 3.686 24 O -0.443 6.443 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.106 0.894 34 H 0.009 0.991 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.806 -4.479 18.044 20.164 hybrid contribution 0.605 0.332 -0.910 1.143 sum 8.412 -4.147 17.134 19.533 Atomic orbital electron populations 1.22102 0.76675 1.03652 1.04773 1.45272 1.09695 1.05973 1.57845 1.20482 0.92595 0.87149 0.92685 1.21293 0.96976 0.91904 0.94694 1.62275 1.18257 1.44227 1.01522 1.22311 0.94304 1.00143 0.90282 1.21973 0.95923 0.92484 0.95651 1.62302 1.18555 1.40768 1.04658 1.19696 0.93235 0.95787 0.84356 1.21095 0.94920 1.46658 0.92158 0.92001 1.24984 0.95159 0.95560 0.98802 1.69943 1.12729 1.49808 1.21261 0.86565 0.80699 0.79100 0.81075 1.20258 1.21325 1.20174 1.22060 0.94580 1.00164 0.90483 1.22195 0.94534 0.91299 0.98536 1.20473 0.91587 0.99689 1.14384 1.21377 1.00553 0.91798 0.89639 1.22076 0.92793 0.99968 1.12662 1.17157 0.89324 0.82664 0.79503 1.90948 1.70106 1.29484 1.53757 0.89724 0.89734 0.89832 0.88767 0.91412 0.93739 0.91203 0.95411 0.89419 0.99061 0.95195 0.92820 0.95089 0.90786 0.90964 0.93751 0.83986 0.84864 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.28 59.85 0.56 1.32 16 2 N -0.48 -5.81 2.99 -122.54 -0.37 -6.18 16 3 C 0.18 1.84 5.03 -81.88 -0.41 1.43 16 4 C 0.08 0.71 4.25 -4.98 -0.02 0.69 16 5 N -0.54 -6.45 3.82 -235.91 -0.90 -7.35 16 6 C 0.06 0.81 5.44 -3.76 -0.02 0.79 16 7 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 8 N -0.54 -10.97 4.70 -235.91 -1.11 -12.08 16 9 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 10 C -0.51 -14.00 8.47 -34.44 -0.29 -14.29 16 11 H 0.06 1.67 7.13 -52.49 -0.37 1.30 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 14 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 19 C 0.06 0.77 5.61 -3.77 -0.02 0.74 16 20 C -0.24 -2.11 9.52 -39.87 -0.38 -2.49 16 21 C -0.01 -0.11 10.10 -39.51 -0.40 -0.50 16 22 C -0.25 -2.91 9.99 -39.38 -0.39 -3.30 16 23 C 0.51 7.33 7.41 -15.45 -0.11 7.22 16 24 O -0.56 -10.03 16.64 4.86 0.08 -9.95 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 0.74 6.21 -51.93 -0.32 0.42 16 27 H 0.08 0.95 7.38 -51.93 -0.38 0.57 16 28 H 0.09 0.69 6.98 -51.93 -0.36 0.32 16 29 H 0.07 0.53 7.80 -51.93 -0.41 0.13 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.96 7.13 -51.93 -0.37 0.59 16 32 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.09 1.78 6.79 -51.93 -0.35 1.43 16 34 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 35 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 39 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.14 0.96 7.89 -52.49 -0.41 0.54 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -32.54 343.33 -9.82 -42.36 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.76 Total: -2.78 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.66 Total: 0.16 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -1.64 Total: -51.29 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.54 -9.82 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248807912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds