Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35760 * 119.62471 * 2 1 4 4 C 1.50698 * 119.65093 * 0.02562 * 3 2 1 5 5 N 1.46897 * 109.47242 * 294.99840 * 4 3 2 6 6 C 1.46965 * 110.99710 * 293.79933 * 5 4 3 7 7 C 1.53052 * 109.36267 * 176.81271 * 6 5 4 8 8 N 1.46956 * 109.36644 * 58.39492 * 7 6 5 9 9 C 1.46904 * 110.99637 * 176.80899 * 8 7 6 10 10 C 1.50694 * 109.47392 * 293.80366 * 9 8 7 11 11 H 1.07997 * 120.00250 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00009 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00132 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.46925 * 60.00084 * 14 12 10 16 16 H 1.48499 * 109.47027 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47174 * 300.00061 * 14 12 10 18 18 C 1.46948 * 110.88381 * 300.68015 * 8 7 6 19 19 C 1.46956 * 111.00491 * 169.99893 * 5 4 3 20 20 C 1.35357 * 120.70423 * 180.02562 * 3 2 1 21 21 C 1.40201 * 119.94543 * 359.97438 * 20 3 2 22 22 C 1.36400 * 119.26462 * 359.97438 * 21 20 3 23 23 C 1.34658 * 119.62656 * 179.73774 * 2 1 3 24 24 O 1.22066 * 119.98287 * 359.97057 * 23 2 1 25 25 H 1.09002 * 109.47391 * 89.99480 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99536 * 1 2 3 27 27 H 1.09004 * 109.47041 * 209.99663 * 1 2 3 28 28 H 1.09001 * 109.47183 * 54.99475 * 4 3 2 29 29 H 1.09000 * 109.47444 * 174.99750 * 4 3 2 30 30 H 1.09001 * 109.48636 * 296.77388 * 6 5 4 31 31 H 1.09001 * 109.48949 * 56.83992 * 6 5 4 32 32 H 1.09008 * 109.48578 * 298.43028 * 7 6 5 33 33 H 1.08998 * 109.50696 * 178.37896 * 7 6 5 34 34 H 1.09000 * 109.46767 * 53.80586 * 9 8 7 35 35 H 1.09007 * 109.46912 * 173.80049 * 9 8 7 36 36 H 0.96998 * 120.00031 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.49114 * 299.35139 * 18 8 7 38 38 H 1.08999 * 109.49117 * 179.28473 * 18 8 7 39 39 H 1.09002 * 109.48644 * 303.15423 * 19 5 4 40 40 H 1.08994 * 109.48762 * 63.21847 * 19 5 4 41 41 H 1.07999 * 120.02588 * 180.02562 * 20 3 2 42 42 H 1.07996 * 120.36357 * 180.02562 * 21 20 3 43 43 H 1.08002 * 120.34612 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1801 0.0000 4 6 1.3661 2.4756 0.0006 5 7 0.6124 2.5978 -1.2543 6 6 1.5196 2.7345 -2.4024 7 6 0.7001 2.7789 -3.6943 8 7 -0.2429 3.9044 -3.6347 9 6 -0.9966 4.0266 -4.8898 10 6 -0.0574 4.4084 -6.0047 11 1 0.9942 4.5470 -5.8013 12 6 -0.5408 4.5820 -7.2843 13 7 -1.8216 4.4148 -7.5316 14 14 0.6233 5.0560 -8.6662 15 1 1.6663 4.0096 -8.8156 16 1 -0.1389 5.1805 -9.9346 17 1 1.2677 6.3552 -8.3469 18 6 -1.1500 3.7677 -2.4868 19 6 -0.3306 3.7234 -1.1949 20 6 3.4894 1.2056 -0.0005 21 6 4.2120 0.0042 -0.0005 22 6 3.5360 -1.1805 0.0005 23 6 2.1307 -1.1705 0.0054 24 8 1.5131 -2.2234 0.0107 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8901 0.5138 28 1 0.6741 2.4866 0.8426 29 1 2.0606 3.3110 0.0901 30 1 2.0939 3.6557 -2.3043 31 1 2.1995 1.8830 -2.4320 32 1 0.1467 1.8464 -3.8060 33 1 1.3687 2.9091 -4.5451 34 1 -1.4696 3.0729 -5.1237 35 1 -1.7622 4.7948 -4.7805 36 1 -2.1616 4.5365 -8.4319 37 1 -1.7244 2.8466 -2.5849 38 1 -1.8299 4.6192 -2.4571 39 1 -0.9995 3.5929 -0.3442 40 1 0.2228 4.6558 -1.0831 41 1 4.0121 2.1507 -0.0001 42 1 5.2919 0.0167 -0.0005 43 1 4.0751 -2.1163 0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248807912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = -5.873648 kcal Electronic energy + Delta-G solvation = -23744.517543 eV Core-core repulsion = 20403.399633 eV Total energy + Delta-G solvation = -3341.117910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42256 -40.17154 -38.27621 -36.55340 -35.46727 -34.55680 -32.09758 -31.69179 -29.80639 -28.52483 -27.70534 -25.64630 -24.52838 -23.68141 -23.40088 -22.57130 -20.63965 -18.50206 -18.30570 -18.24765 -17.47213 -17.10611 -16.86095 -16.32679 -15.92666 -15.82998 -15.57961 -15.41862 -15.23839 -14.90847 -14.34208 -14.21155 -13.96845 -13.67171 -13.43877 -13.23159 -13.20607 -12.90626 -12.73563 -12.65434 -12.52758 -12.31068 -12.22972 -12.10966 -11.88618 -11.51420 -11.19899 -11.05226 -10.93231 -10.62033 -9.40079 -9.04321 -8.89699 -8.21465 -6.32004 -0.10477 0.87737 1.40909 1.43878 1.51753 1.73931 2.39575 2.60662 2.94162 3.11052 3.29847 3.38847 3.77251 3.96637 4.00457 4.18155 4.22473 4.26030 4.37919 4.41135 4.45782 4.49234 4.56411 4.61170 4.65531 4.68893 4.83148 4.89096 4.98071 5.04282 5.05364 5.09551 5.20305 5.22362 5.28473 5.38463 5.62147 5.63477 5.91743 5.97163 6.04821 6.18469 6.31808 6.62651 6.83951 7.00713 7.38071 8.89589 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.003647 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.873666 B = 7674.910322 C = 8033.988396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.480 5.480 3 C 0.167 3.833 4 C 0.084 3.916 5 N -0.548 5.548 6 C 0.075 3.925 7 C 0.070 3.930 8 N -0.539 5.539 9 C 0.208 3.792 10 C -0.524 4.524 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.265 1.265 18 C 0.051 3.949 19 C 0.075 3.925 20 C -0.226 4.226 21 C 0.010 3.990 22 C -0.281 4.281 23 C 0.490 3.510 24 O -0.618 6.618 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.004 0.996 33 H 0.064 0.936 34 H -0.045 1.045 35 H 0.005 0.995 36 H 0.264 0.736 37 H 0.017 0.983 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.126 -1.847 19.919 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.188 5.188 3 C 0.056 3.944 4 C -0.043 4.043 5 N -0.273 5.273 6 C -0.053 4.053 7 C -0.059 4.059 8 N -0.264 5.264 9 C 0.082 3.918 10 C -0.562 4.562 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.193 1.193 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.078 4.078 19 C -0.052 4.052 20 C -0.249 4.249 21 C -0.012 4.012 22 C -0.303 4.303 23 C 0.296 3.704 24 O -0.507 6.507 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.022 0.978 33 H 0.082 0.918 34 H -0.028 1.028 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.194 0.806 42 H 0.189 0.811 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.526 -2.474 19.789 22.550 hybrid contribution -0.234 -0.238 -1.401 1.440 sum 10.292 -2.712 18.388 21.246 Atomic orbital electron populations 1.22079 0.76588 1.04500 1.03732 1.45300 1.09997 1.06308 1.57196 1.20908 0.93437 0.86741 0.93266 1.21416 0.97785 0.91779 0.93306 1.62148 1.18508 1.44260 1.02420 1.22032 0.93632 1.00907 0.88710 1.21937 0.95316 0.90628 0.98001 1.62236 1.18821 1.41719 1.03597 1.19341 0.92723 0.92893 0.86859 1.21428 0.95256 1.46427 0.93086 0.91741 1.25929 0.96798 0.95346 1.01596 1.70083 1.14758 1.50855 1.21942 0.85440 0.78500 0.79215 0.77509 1.19333 1.21001 1.18990 1.22212 0.94892 0.99433 0.91260 1.22101 0.94668 0.91772 0.96693 1.20992 0.91164 1.01008 1.11721 1.21796 1.02387 0.90619 0.86419 1.22130 0.91607 1.01560 1.14987 1.17673 0.90486 0.82610 0.79644 1.90901 1.71219 1.31382 1.57155 0.91661 0.86848 0.91003 0.86268 0.88676 0.92756 0.90427 0.97756 0.91757 1.02779 0.97675 0.92708 0.96473 0.90911 0.87325 0.92940 0.80608 0.81148 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.56 9.28 127.77 1.19 2.75 16 2 N -0.48 -11.07 2.99 -659.74 -1.97 -13.04 16 3 C 0.17 2.76 5.03 41.29 0.21 2.97 16 4 C 0.08 1.08 4.25 85.56 0.36 1.45 16 5 N -0.55 -11.38 3.82 -900.27 -3.44 -14.82 16 6 C 0.08 1.95 5.44 86.31 0.47 2.42 16 7 C 0.07 2.64 5.43 86.31 0.47 3.10 16 8 N -0.54 -22.32 4.70 -900.29 -4.23 -26.55 16 9 C 0.21 11.09 4.72 85.55 0.40 11.49 16 10 C -0.52 -29.46 8.47 25.60 0.22 -29.24 16 11 H 0.06 3.51 7.13 -2.91 -0.02 3.49 16 12 C 0.00 0.07 5.46 84.66 0.46 0.54 16 13 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 14 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 C 0.05 1.65 5.61 86.31 0.48 2.13 16 19 C 0.07 1.60 5.61 86.31 0.48 2.08 16 20 C -0.23 -2.92 9.52 22.08 0.21 -2.71 16 21 C 0.01 0.13 10.10 22.32 0.23 0.36 16 22 C -0.28 -6.18 9.99 22.40 0.22 -5.95 16 23 C 0.49 14.23 7.41 84.82 0.63 14.86 16 24 O -0.62 -23.48 16.64 -5.53 -0.09 -23.57 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.11 1.69 6.21 -2.39 -0.01 1.68 16 27 H 0.07 1.71 7.38 -2.38 -0.02 1.69 16 28 H 0.12 1.03 6.98 -2.39 -0.02 1.01 16 29 H 0.10 0.84 7.80 -2.39 -0.02 0.82 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.92 7.13 -2.39 -0.02 1.90 16 32 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.06 2.68 6.79 -2.39 -0.02 2.66 16 34 H -0.05 -2.70 8.12 -2.39 -0.02 -2.72 16 35 H 0.01 0.29 8.03 -2.38 -0.02 0.28 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 39 H 0.11 1.61 8.07 -2.39 -0.02 1.59 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.18 1.16 7.89 -2.91 -0.02 1.13 16 42 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -76.43 343.33 -0.40 -76.83 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.98 Total: 5.26 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 6.03 Total: 6.25 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -9.35 Total: -110.74 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.09 Total: -23.57 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -76.43 -0.40 -76.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248807912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.956 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds