Wall clock time and date at job start Tue Mar 31 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47664 * 2 1 4 4 C 1.36972 * 120.00278 * 264.27934 * 3 2 1 5 5 H 1.07997 * 120.00187 * 192.50553 * 4 3 2 6 6 C 1.38980 * 119.99948 * 12.50598 * 4 3 2 7 7 N 1.31409 * 120.00087 * 21.27189 * 6 4 3 8 8 Si 1.86803 * 119.99848 * 201.27565 * 6 4 3 9 9 H 1.48503 * 109.46944 * 90.00241 * 8 6 4 10 10 H 1.48502 * 109.47075 * 209.99946 * 8 6 4 11 11 H 1.48491 * 109.47364 * 329.99905 * 8 6 4 12 12 C 1.34781 * 119.99613 * 84.27934 * 3 2 1 13 13 O 1.21630 * 119.99548 * 185.70419 * 12 3 2 14 14 C 1.47356 * 120.00254 * 5.70006 * 12 3 2 15 15 C 1.41319 * 126.42092 * 339.97064 * 14 12 3 16 16 N 1.30443 * 108.02820 * 179.79359 * 15 14 12 17 17 N 1.39935 * 108.91170 * 0.37685 * 16 15 14 18 18 C 1.46502 * 125.75119 * 179.87565 * 17 16 15 19 19 C 1.52994 * 109.47144 * 94.69463 * 18 17 16 20 20 C 1.52999 * 109.46928 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47419 * 299.99825 * 20 19 18 22 22 C 1.53001 * 109.46972 * 59.99896 * 21 20 19 23 23 C 1.52997 * 109.47054 * 214.69482 * 18 17 16 24 24 C 1.34286 * 108.49734 * 359.61504 * 17 16 15 25 25 H 1.08991 * 109.47082 * 188.52688 * 1 2 3 26 26 H 1.09006 * 109.46754 * 308.52921 * 1 2 3 27 27 H 1.09002 * 109.46661 * 68.51867 * 1 2 3 28 28 H 1.09004 * 109.47184 * 239.99945 * 2 1 3 29 29 H 1.09003 * 109.47226 * 120.00511 * 2 1 3 30 30 H 0.97000 * 120.00206 * 179.97438 * 7 6 4 31 31 H 1.08003 * 125.98725 * 0.02880 * 15 14 12 32 32 H 1.09005 * 109.46780 * 334.69397 * 18 17 16 33 33 H 1.08994 * 109.47214 * 59.99781 * 19 18 17 34 34 H 1.09003 * 109.47031 * 300.00004 * 19 18 17 35 35 H 1.09000 * 109.47394 * 60.00532 * 20 19 18 36 36 H 1.09001 * 109.46767 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47474 * 180.02562 * 21 20 19 38 38 H 1.09009 * 109.47267 * 300.00512 * 21 20 19 39 39 H 1.08994 * 109.46964 * 60.00576 * 22 21 20 40 40 H 1.09003 * 109.47076 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47541 * 59.99956 * 23 18 17 42 42 H 1.08996 * 109.47405 * 299.99804 * 23 18 17 43 43 H 1.08001 * 126.29981 * 180.20151 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3583 1.9874 -1.1803 5 1 2.9030 2.9199 -1.1711 6 6 2.0021 1.4026 -2.3897 7 7 1.0165 0.5346 -2.4348 8 14 2.9246 1.8503 -3.9511 9 1 4.0749 0.9279 -4.1282 10 1 2.0117 1.7325 -5.1164 11 1 3.4206 3.2463 -3.8501 12 6 2.1334 2.0552 1.1615 13 8 2.4390 3.2325 1.1536 14 6 1.8889 1.3660 2.4407 15 6 1.1654 0.1656 2.6222 16 7 1.1752 -0.1233 3.8942 17 7 1.8871 0.8679 4.5789 18 6 2.1226 0.9086 6.0243 19 6 3.4787 0.2737 6.3382 20 6 3.7242 0.3157 7.8478 21 6 3.7190 1.7692 8.3251 22 6 2.3629 2.4043 8.0112 23 6 2.1176 2.3624 6.5011 24 6 2.3230 1.7724 3.6872 25 1 -0.3633 -1.0162 0.1524 26 1 -0.3633 0.6402 0.8040 27 1 -0.3633 0.3763 -0.9563 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.7677 0.1267 -3.2789 31 1 0.6911 -0.4134 1.8435 32 1 1.3351 0.3556 6.5364 33 1 4.2660 0.8266 5.8261 34 1 3.4822 -0.7621 5.9986 35 1 2.9368 -0.2377 8.3596 36 1 4.6902 -0.1371 8.0715 37 1 3.8944 1.7992 9.4005 38 1 4.5065 2.3226 7.8133 39 1 1.5755 1.8511 8.5229 40 1 2.3594 3.4400 8.3508 41 1 1.1514 2.8149 6.2774 42 1 2.9049 2.9155 5.9890 43 1 2.9056 2.6554 3.9047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318408392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:10 Heat of formation + Delta-G solvation = 56.437058 kcal Electronic energy + Delta-G solvation = -23810.325333 eV Core-core repulsion = 20471.909418 eV Total energy + Delta-G solvation = -3338.415915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03580 -38.73705 -37.80835 -35.04412 -33.10987 -31.70003 -31.14486 -29.77423 -29.60660 -28.46840 -25.14599 -23.34407 -22.97056 -22.25214 -21.41747 -20.52434 -19.77408 -18.78750 -17.15075 -16.63391 -15.75482 -15.32251 -14.92142 -14.65180 -14.48185 -14.32066 -14.01993 -13.95414 -13.50076 -13.15275 -12.71441 -12.58590 -12.48646 -12.44777 -11.84777 -11.56952 -11.47093 -11.40585 -11.15693 -11.07305 -10.92427 -10.79342 -10.71249 -10.57512 -10.34858 -10.29677 -10.06173 -9.85873 -9.00899 -8.84029 -8.35548 -7.95821 -7.64223 -6.25875 -3.72528 2.16356 2.69242 2.90554 3.25073 3.29260 3.34545 4.16665 4.27926 4.39457 4.46601 4.57599 4.71349 4.86511 4.94477 5.02843 5.11425 5.13359 5.22045 5.28394 5.31040 5.43694 5.49426 5.71462 5.72133 5.76421 5.80825 5.89045 5.93844 6.00051 6.05643 6.15230 6.25215 6.33987 6.62798 6.68753 6.80549 7.05101 7.32125 7.35000 7.52538 7.90514 8.09434 8.19504 8.61781 9.26684 9.52182 10.12178 10.71567 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.003630 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.187821 B = 7712.497823 C = 8078.017323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.433 5.433 4 C -0.298 4.298 5 H 0.103 0.897 6 C 0.027 3.973 7 N -0.869 5.869 8 Si 0.923 3.077 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.514 3.486 13 O -0.601 6.601 14 C -0.249 4.249 15 C 0.052 3.948 16 N -0.315 5.315 17 N -0.368 5.368 18 C 0.166 3.834 19 C -0.131 4.131 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.133 4.133 24 C 0.094 3.906 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.266 0.734 31 H 0.211 0.789 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -2.871 17.825 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.150 5.150 4 C -0.425 4.425 5 H 0.121 0.879 6 C -0.175 4.175 7 N -0.510 5.510 8 Si 0.750 3.250 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.303 3.697 13 O -0.488 6.488 14 C -0.264 4.264 15 C -0.134 4.134 16 N -0.135 5.135 17 N -0.149 5.149 18 C 0.064 3.936 19 C -0.170 4.170 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.151 4.151 23 C -0.171 4.171 24 C -0.055 4.055 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.089 -3.249 18.650 19.045 hybrid contribution 0.546 0.603 -1.478 1.687 sum 2.634 -2.646 17.171 17.573 Atomic orbital electron populations 1.22476 0.96697 0.98881 1.04641 1.21728 0.94432 0.84066 1.00919 1.43560 1.55296 1.11083 1.05079 1.19759 1.32552 1.08270 0.81959 0.87915 1.25231 0.95777 0.97340 0.99163 1.70000 1.24195 1.30063 1.26697 0.85968 0.79271 0.79138 0.80614 1.20486 1.21119 1.19482 1.16974 0.84382 0.85897 0.82425 1.90574 1.55286 1.15714 1.87202 1.20664 1.10733 1.00142 0.94858 1.25378 0.98071 0.96099 0.93863 1.77061 1.17623 1.12186 1.06616 1.48533 1.41460 1.18424 1.06453 1.21225 0.98619 0.97802 0.75976 1.21995 0.96242 1.01920 0.96845 1.21498 1.02189 0.96940 0.94659 1.21608 0.97575 0.95950 1.01037 1.21490 0.97659 1.01457 0.94527 1.21970 1.03534 0.94734 0.96903 1.22659 0.98895 0.95299 0.88659 0.94418 0.94835 0.87265 0.88634 0.93652 0.92330 0.77286 0.88284 0.91114 0.90927 0.91607 0.91329 0.91637 0.91606 0.91552 0.91093 0.90692 0.90618 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 8.07 37.16 0.30 -3.29 16 2 C 0.11 2.56 4.81 -4.04 -0.02 2.54 16 3 N -0.43 -11.38 2.63 -116.05 -0.31 -11.69 16 4 C -0.30 -8.33 9.39 -14.98 -0.14 -8.47 16 5 H 0.10 3.03 7.36 -52.49 -0.39 2.64 16 6 C 0.03 0.70 4.94 -17.46 -0.09 0.62 16 7 N -0.87 -22.18 8.27 55.50 0.46 -21.72 16 8 Si 0.92 20.53 29.60 -169.99 -5.03 15.50 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.51 13.41 7.53 -12.55 -0.09 13.31 16 13 O -0.60 -17.47 16.60 5.25 0.09 -17.38 16 14 C -0.25 -5.39 5.84 -105.07 -0.61 -6.01 16 15 C 0.05 1.01 8.78 -16.97 -0.15 0.87 16 16 N -0.31 -5.77 12.50 30.87 0.39 -5.39 16 17 N -0.37 -5.91 3.50 -54.29 -0.19 -6.10 16 18 C 0.17 1.92 3.18 -67.93 -0.22 1.70 16 19 C -0.13 -1.33 5.53 -26.73 -0.15 -1.48 16 20 C -0.11 -0.86 5.92 -26.73 -0.16 -1.01 16 21 C -0.12 -0.85 5.92 -26.73 -0.16 -1.00 16 22 C -0.11 -0.82 5.92 -26.70 -0.16 -0.98 16 23 C -0.13 -1.29 4.84 -26.71 -0.13 -1.42 16 24 C 0.09 1.71 10.45 -16.53 -0.17 1.54 16 25 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 26 H 0.03 0.71 6.75 -51.93 -0.35 0.36 16 27 H 0.11 2.63 5.81 -51.93 -0.30 2.33 16 28 H 0.10 2.31 6.06 -51.93 -0.31 2.00 16 29 H 0.05 0.94 4.84 -51.93 -0.25 0.69 16 30 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.21 3.95 3.43 -52.48 -0.18 3.77 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.75 7.13 -51.93 -0.37 0.38 16 43 H 0.18 2.84 7.23 -52.49 -0.38 2.46 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -31.39 331.98 -7.85 -39.25 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.32 Total: 5.63 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.94 Total: -3.10 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.35 Total: -44.91 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.09 Total: -17.38 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.39 -7.85 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318408392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.684 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds