Wall clock time and date at job start Tue Mar 31 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47664 * 2 1 4 4 C 1.36972 * 120.00278 * 264.27934 * 3 2 1 5 5 H 1.07997 * 120.00187 * 192.50553 * 4 3 2 6 6 C 1.38980 * 119.99948 * 12.50598 * 4 3 2 7 7 N 1.31409 * 120.00087 * 21.27189 * 6 4 3 8 8 Si 1.86803 * 119.99848 * 201.27565 * 6 4 3 9 9 H 1.48503 * 109.46944 * 90.00241 * 8 6 4 10 10 H 1.48502 * 109.47075 * 209.99946 * 8 6 4 11 11 H 1.48491 * 109.47364 * 329.99905 * 8 6 4 12 12 C 1.34781 * 119.99613 * 84.27934 * 3 2 1 13 13 O 1.21630 * 119.99548 * 185.70419 * 12 3 2 14 14 C 1.47356 * 120.00254 * 5.70006 * 12 3 2 15 15 C 1.41319 * 126.42092 * 339.97064 * 14 12 3 16 16 N 1.30443 * 108.02820 * 179.79359 * 15 14 12 17 17 N 1.39935 * 108.91170 * 0.37685 * 16 15 14 18 18 C 1.46502 * 125.75119 * 179.87565 * 17 16 15 19 19 C 1.52994 * 109.47144 * 94.69463 * 18 17 16 20 20 C 1.52999 * 109.46928 * 180.02562 * 19 18 17 21 21 C 1.52994 * 109.47419 * 299.99825 * 20 19 18 22 22 C 1.53001 * 109.46972 * 59.99896 * 21 20 19 23 23 C 1.52997 * 109.47054 * 214.69482 * 18 17 16 24 24 C 1.34286 * 108.49734 * 359.61504 * 17 16 15 25 25 H 1.08991 * 109.47082 * 188.52688 * 1 2 3 26 26 H 1.09006 * 109.46754 * 308.52921 * 1 2 3 27 27 H 1.09002 * 109.46661 * 68.51867 * 1 2 3 28 28 H 1.09004 * 109.47184 * 239.99945 * 2 1 3 29 29 H 1.09003 * 109.47226 * 120.00511 * 2 1 3 30 30 H 0.97000 * 120.00206 * 179.97438 * 7 6 4 31 31 H 1.08003 * 125.98725 * 0.02880 * 15 14 12 32 32 H 1.09005 * 109.46780 * 334.69397 * 18 17 16 33 33 H 1.08994 * 109.47214 * 59.99781 * 19 18 17 34 34 H 1.09003 * 109.47031 * 300.00004 * 19 18 17 35 35 H 1.09000 * 109.47394 * 60.00532 * 20 19 18 36 36 H 1.09001 * 109.46767 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47474 * 180.02562 * 21 20 19 38 38 H 1.09009 * 109.47267 * 300.00512 * 21 20 19 39 39 H 1.08994 * 109.46964 * 60.00576 * 22 21 20 40 40 H 1.09003 * 109.47076 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47541 * 59.99956 * 23 18 17 42 42 H 1.08996 * 109.47405 * 299.99804 * 23 18 17 43 43 H 1.08001 * 126.29981 * 180.20151 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3583 1.9874 -1.1803 5 1 2.9030 2.9199 -1.1711 6 6 2.0021 1.4026 -2.3897 7 7 1.0165 0.5346 -2.4348 8 14 2.9246 1.8503 -3.9511 9 1 4.0749 0.9279 -4.1282 10 1 2.0117 1.7325 -5.1164 11 1 3.4206 3.2463 -3.8501 12 6 2.1334 2.0552 1.1615 13 8 2.4390 3.2325 1.1536 14 6 1.8889 1.3660 2.4407 15 6 1.1654 0.1656 2.6222 16 7 1.1752 -0.1233 3.8942 17 7 1.8871 0.8679 4.5789 18 6 2.1226 0.9086 6.0243 19 6 3.4787 0.2737 6.3382 20 6 3.7242 0.3157 7.8478 21 6 3.7190 1.7692 8.3251 22 6 2.3629 2.4043 8.0112 23 6 2.1176 2.3624 6.5011 24 6 2.3230 1.7724 3.6872 25 1 -0.3633 -1.0162 0.1524 26 1 -0.3633 0.6402 0.8040 27 1 -0.3633 0.3763 -0.9563 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.7677 0.1267 -3.2789 31 1 0.6911 -0.4134 1.8435 32 1 1.3351 0.3556 6.5364 33 1 4.2660 0.8266 5.8261 34 1 3.4822 -0.7621 5.9986 35 1 2.9368 -0.2377 8.3596 36 1 4.6902 -0.1371 8.0715 37 1 3.8944 1.7992 9.4005 38 1 4.5065 2.3226 7.8133 39 1 1.5755 1.8511 8.5229 40 1 2.3594 3.4400 8.3508 41 1 1.1514 2.8149 6.2774 42 1 2.9049 2.9155 5.9890 43 1 2.9056 2.6554 3.9047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318408392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:09 Heat of formation + Delta-G solvation = 38.315974 kcal Electronic energy + Delta-G solvation = -23811.111122 eV Core-core repulsion = 20471.909418 eV Total energy + Delta-G solvation = -3339.201704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48172 -40.19390 -39.09779 -37.05132 -34.43458 -33.46648 -31.87142 -31.54981 -31.13287 -29.69811 -27.04275 -24.64745 -23.98235 -23.70567 -22.87741 -21.71519 -20.95166 -20.21974 -18.91026 -18.30663 -17.36616 -16.53165 -16.32897 -16.21892 -15.84211 -15.56894 -15.46691 -15.05686 -14.94148 -14.48943 -14.22704 -13.89712 -13.73705 -13.44466 -13.25914 -13.15861 -12.93074 -12.85209 -12.59967 -12.38883 -12.15746 -12.12420 -12.07730 -11.92175 -11.71203 -11.53896 -11.39254 -11.21141 -10.85439 -10.39381 -10.35171 -9.64558 -9.52428 -8.25385 -5.82012 0.66230 1.24263 1.42846 1.46033 1.49919 1.57261 2.31750 2.54048 3.07790 3.21945 3.42902 3.64233 3.78511 3.86320 3.92692 4.10219 4.18299 4.24179 4.30372 4.40965 4.44010 4.47153 4.54908 4.61561 4.76563 4.84883 4.88656 4.89396 5.00841 5.02858 5.13777 5.14191 5.15966 5.28489 5.32582 5.44245 5.47008 5.48879 5.51726 5.99705 6.02489 6.14655 6.57361 6.65654 7.22940 7.53130 8.12418 8.69557 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032695 B = 0.003630 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.187821 B = 7712.497823 C = 8078.017323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.116 3.884 3 N -0.443 5.443 4 C -0.346 4.346 5 H 0.072 0.928 6 C 0.003 3.997 7 N -0.870 5.870 8 Si 0.987 3.013 9 H -0.268 1.268 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.502 3.498 13 O -0.647 6.647 14 C -0.288 4.288 15 C 0.052 3.948 16 N -0.317 5.317 17 N -0.351 5.351 18 C 0.155 3.845 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.108 4.108 23 C -0.131 4.131 24 C 0.112 3.888 25 H 0.073 0.927 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.274 0.726 31 H 0.215 0.785 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -4.018 19.544 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.007 4.007 3 N -0.159 5.159 4 C -0.473 4.473 5 H 0.090 0.910 6 C -0.200 4.200 7 N -0.509 5.509 8 Si 0.811 3.189 9 H -0.194 1.194 10 H -0.197 1.197 11 H -0.204 1.204 12 C 0.293 3.707 13 O -0.538 6.538 14 C -0.302 4.302 15 C -0.133 4.133 16 N -0.137 5.137 17 N -0.131 5.131 18 C 0.056 3.944 19 C -0.165 4.165 20 C -0.147 4.147 21 C -0.160 4.160 22 C -0.146 4.146 23 C -0.169 4.169 24 C -0.040 4.040 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.140 -4.460 20.397 20.988 hybrid contribution 0.496 0.939 -1.916 2.191 sum 2.636 -3.522 18.480 18.997 Atomic orbital electron populations 1.22299 0.95462 1.00807 1.02884 1.21802 0.95343 0.82443 1.01092 1.43771 1.55178 1.12172 1.04812 1.19652 1.35111 1.08820 0.83764 0.90963 1.25940 0.95884 0.96963 1.01218 1.70094 1.23563 1.29378 1.27823 0.85032 0.78361 0.78417 0.77058 1.19353 1.19732 1.20443 1.17606 0.83650 0.85685 0.83802 1.90510 1.57467 1.17708 1.88104 1.20407 1.14003 1.01817 0.94022 1.25297 0.98049 0.95459 0.94497 1.77021 1.17867 1.12762 1.06043 1.48956 1.39361 1.16868 1.07876 1.21744 0.99904 0.99626 0.73160 1.21969 0.94805 1.00747 0.99025 1.21491 1.03120 0.97795 0.92275 1.21616 0.97086 0.95175 1.02131 1.21492 0.98303 1.02499 0.92277 1.21996 1.03004 0.93007 0.98910 1.22827 0.97641 0.95492 0.88019 0.90823 0.95244 0.89945 0.90197 0.91517 0.91549 0.76880 0.87301 0.91888 0.92106 0.90611 0.90312 0.89806 0.91956 0.90562 0.89974 0.91520 0.90985 0.79213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.62 8.07 71.98 0.58 -6.04 16 2 C 0.12 5.34 4.81 86.38 0.42 5.76 16 3 N -0.44 -24.17 2.63 -639.30 -1.68 -25.86 16 4 C -0.35 -20.20 9.39 84.07 0.79 -19.41 16 5 H 0.07 4.55 7.36 -2.91 -0.02 4.53 16 6 C 0.00 0.13 4.94 84.93 0.42 0.55 16 7 N -0.87 -44.42 8.27 21.67 0.18 -44.24 16 8 Si 0.99 42.41 29.60 68.60 2.03 44.44 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.50 27.28 7.53 86.64 0.65 27.93 16 13 O -0.65 -39.66 16.60 -4.13 -0.07 -39.72 16 14 C -0.29 -12.64 5.84 -20.15 -0.12 -12.75 16 15 C 0.05 2.03 8.78 85.66 0.75 2.78 16 16 N -0.32 -11.22 12.50 -56.26 -0.70 -11.92 16 17 N -0.35 -10.87 3.50 -325.68 -1.14 -12.01 16 18 C 0.16 3.31 3.18 44.99 0.14 3.45 16 19 C -0.13 -2.33 5.53 30.59 0.17 -2.16 16 20 C -0.11 -1.30 5.92 30.59 0.18 -1.12 16 21 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 22 C -0.11 -1.24 5.92 30.61 0.18 -1.06 16 23 C -0.13 -2.29 4.84 30.61 0.15 -2.14 16 24 C 0.11 4.05 10.45 84.29 0.88 4.93 16 25 H 0.07 2.53 8.09 -2.39 -0.02 2.51 16 26 H 0.03 1.24 6.75 -2.38 -0.02 1.22 16 27 H 0.08 3.97 5.81 -2.39 -0.01 3.96 16 28 H 0.08 3.90 6.06 -2.38 -0.01 3.88 16 29 H 0.07 2.77 4.84 -2.39 -0.01 2.76 16 30 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.22 7.88 3.43 -2.91 -0.01 7.87 16 32 H 0.11 2.16 8.14 -2.38 -0.02 2.15 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.32 7.13 -2.39 -0.02 1.31 16 43 H 0.19 6.16 7.23 -2.91 -0.02 6.13 16 Total: -1.00 -70.31 331.98 5.00 -65.31 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 1.01 Total: 24.38 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.38 Total: -0.38 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -3.35 Total: -94.03 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.07 Total: -39.72 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.31 5.00 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318408392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.623 kcal (2) G-P(sol) polarization free energy of solvation -70.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds