Wall clock time and date at job start Tue Mar 31 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21297 * 120.00328 * 2 1 4 4 N 1.34782 * 119.99634 * 179.97438 * 2 1 3 5 5 C 1.40187 * 119.99605 * 185.26637 * 4 2 1 6 6 C 1.39418 * 120.40515 * 32.67495 * 5 4 2 7 7 C 1.38258 * 118.44507 * 179.97438 * 6 5 4 8 8 C 1.39110 * 119.17274 * 0.02562 * 7 6 5 9 9 N 1.39205 * 119.63137 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00204 * 359.97438 * 9 8 7 11 11 C 1.52999 * 109.47161 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47145 * 299.99907 * 11 10 9 13 13 C 1.52999 * 109.46922 * 59.99977 * 11 10 9 14 14 C 1.53000 * 109.46899 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46956 * 180.02562 * 14 11 10 16 16 H 1.07991 * 120.00248 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99866 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46990 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47242 * 119.99765 * 19 17 15 22 22 H 1.48504 * 109.46974 * 239.99842 * 19 17 15 23 23 N 1.32349 * 120.73542 * 359.97438 * 8 7 6 24 24 C 1.31968 * 121.69700 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.47412 * 269.99780 * 1 2 3 26 26 H 1.09003 * 109.46791 * 29.99895 * 1 2 3 27 27 H 1.08998 * 109.46894 * 150.00158 * 1 2 3 28 28 H 0.96996 * 119.99988 * 5.27296 * 4 2 1 29 29 H 1.07999 * 120.77665 * 359.96185 * 6 5 4 30 30 H 1.07996 * 120.40903 * 179.72577 * 7 6 5 31 31 H 0.97006 * 119.99917 * 179.97438 * 9 8 7 32 32 H 1.08995 * 109.46853 * 300.00014 * 10 9 8 33 33 H 1.09000 * 109.46668 * 59.99826 * 10 9 8 34 34 H 1.08997 * 109.47321 * 60.00384 * 12 11 10 35 35 H 1.09000 * 109.46813 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47568 * 299.99960 * 12 11 10 37 37 H 1.09007 * 109.47412 * 60.00476 * 13 11 10 38 38 H 1.09000 * 109.47111 * 179.97438 * 13 11 10 39 39 H 1.08990 * 109.47785 * 300.00032 * 13 11 10 40 40 H 1.09002 * 109.47584 * 300.00415 * 14 11 10 41 41 H 1.09001 * 109.47286 * 60.00336 * 14 11 10 42 42 H 0.97008 * 119.99667 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.62135 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5783 -1.1698 0.1120 6 6 4.2282 -0.1895 0.8605 7 6 5.6077 -0.2308 0.9435 8 6 6.2968 -1.2419 0.2817 9 7 7.6858 -1.2923 0.3584 10 6 8.4138 -0.2839 1.1325 11 6 9.9154 -0.5669 1.0543 12 6 10.2031 -1.9557 1.6278 13 6 10.3688 -0.5141 -0.4060 14 6 10.6756 0.4867 1.8622 15 6 12.1547 0.2083 1.7846 16 1 12.5162 -0.6358 1.2163 17 6 13.0463 1.0308 2.4401 18 7 12.6060 2.0585 3.1326 19 14 14.8797 0.6863 2.3434 20 1 15.1134 -0.5189 1.5078 21 1 15.5711 1.8519 1.7362 22 1 15.4120 0.4516 3.7097 23 7 5.6465 -2.1563 -0.4201 24 6 4.3307 -2.1470 -0.5207 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6989 -2.0055 -0.0763 29 1 3.6672 0.5843 1.3635 30 1 6.1438 0.5153 1.5111 31 1 8.1717 -1.9953 -0.1007 32 1 8.2084 0.7056 0.7242 33 1 8.0910 -0.3218 2.1729 34 1 9.6616 -2.7061 1.0518 35 1 11.2728 -2.1575 1.5716 36 1 9.8801 -1.9934 2.6681 37 1 10.1638 0.4754 -0.8147 38 1 11.4386 -0.7153 -0.4618 39 1 9.8272 -1.2643 -0.9820 40 1 10.4705 1.4761 1.4533 41 1 10.3527 0.4496 2.9026 42 1 13.2333 2.6374 3.5935 43 1 3.8344 -2.9100 -1.1020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320043879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:49 Heat of formation + Delta-G solvation = -11.324494 kcal Electronic energy + Delta-G solvation = -22597.836738 eV Core-core repulsion = 19256.482461 eV Total energy + Delta-G solvation = -3341.354276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78576 -39.39388 -37.65507 -35.38636 -33.81671 -32.20889 -32.14322 -30.45841 -28.28203 -26.96649 -26.48737 -25.85151 -23.74741 -23.18417 -21.93985 -20.69888 -18.54558 -17.74535 -17.29325 -17.08276 -16.43027 -16.10515 -15.47821 -14.68030 -14.66084 -14.42240 -14.15436 -14.06072 -13.68641 -13.30450 -13.02330 -12.90756 -12.85167 -12.62890 -12.35095 -12.29992 -12.07373 -11.33081 -11.03850 -10.95025 -10.83333 -10.64255 -10.43592 -10.32213 -10.23932 -9.92035 -9.60852 -9.49011 -9.22864 -9.10809 -8.93426 -8.37674 -7.24262 -6.01852 -4.02638 1.27471 1.44984 2.40207 2.85478 3.29647 3.37756 3.40161 3.46575 3.99758 4.41310 4.44529 4.67989 4.78215 4.97037 4.98215 5.12658 5.22560 5.34102 5.42356 5.49162 5.57351 5.69874 5.75731 5.86892 6.04667 6.13978 6.17855 6.26694 6.33054 6.38896 6.62313 6.64842 6.71614 7.03567 7.07490 7.09322 7.14158 7.25647 7.60883 7.73157 7.80828 7.90414 7.97028 8.29793 8.39693 9.02177 9.60693 11.09695 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.002665 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.378314 B =10503.944650 C =11022.566623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.531 6.531 4 N -0.663 5.663 5 C 0.012 3.988 6 C -0.030 4.030 7 C -0.221 4.221 8 C 0.399 3.601 9 N -0.713 5.713 10 C 0.133 3.867 11 C -0.069 4.069 12 C -0.127 4.127 13 C -0.128 4.128 14 C 0.035 3.965 15 C -0.510 4.510 16 H 0.060 0.940 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.535 5.535 24 C 0.132 3.868 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.408 0.592 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.404 0.596 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.259 0.741 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.717 -8.580 -5.716 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.407 6.407 4 N -0.310 5.310 5 C -0.087 4.087 6 C -0.057 4.057 7 C -0.247 4.247 8 C 0.162 3.838 9 N -0.344 5.344 10 C 0.009 3.991 11 C -0.070 4.070 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.002 4.002 15 C -0.548 4.548 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.252 5.252 24 C -0.029 4.029 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.244 0.756 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.241 0.759 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.662 -8.138 -5.888 23.877 hybrid contribution 0.465 -0.087 0.245 0.532 sum -21.197 -8.225 -5.644 23.427 Atomic orbital electron populations 1.21873 0.90998 1.05089 1.04998 1.20988 0.90771 0.83332 0.75615 1.90761 1.70500 1.31284 1.48112 1.43383 1.04955 1.09463 1.73174 1.18399 0.83476 1.01914 1.04869 1.21271 0.93754 0.96803 0.93922 1.21414 0.94181 1.02034 1.07059 1.18485 0.85978 0.89333 0.90044 1.44904 1.01312 1.32917 1.55297 1.21714 0.92604 0.90247 0.94499 1.20864 0.91008 0.98147 0.96970 1.21755 1.02155 0.94998 0.99562 1.21761 1.01883 1.00028 0.94843 1.19110 0.94420 0.92323 0.94353 1.21216 0.91195 1.11770 1.30600 0.92180 1.25014 0.98765 0.95251 0.95522 1.69971 1.34352 1.16185 1.32956 0.86586 0.85831 0.78162 0.77717 1.19783 1.21122 1.21135 1.67153 1.09114 1.26928 1.22044 1.22074 0.88310 0.97074 0.95448 0.88581 0.88649 0.90054 0.75638 0.84266 0.84537 0.75933 0.92160 0.92173 0.95009 0.91461 0.93423 0.93409 0.91451 0.95007 0.96328 0.96344 0.93100 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.31 36.01 0.37 -0.38 16 2 C 0.50 4.72 7.71 -10.98 -0.08 4.63 16 3 O -0.53 -7.60 14.79 5.54 0.08 -7.51 16 4 N -0.66 -5.42 5.36 -9.72 -0.05 -5.47 16 5 C 0.01 0.14 6.31 -83.46 -0.53 -0.39 16 6 C -0.03 -0.41 8.76 -39.13 -0.34 -0.76 16 7 C -0.22 -3.25 9.32 -39.25 -0.37 -3.62 16 8 C 0.40 6.14 7.65 -154.88 -1.18 4.95 16 9 N -0.71 -10.99 5.14 -60.39 -0.31 -11.30 16 10 C 0.13 2.22 3.78 -4.04 -0.02 2.20 16 11 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 12 C -0.13 -2.29 8.05 37.15 0.30 -1.99 16 13 C -0.13 -2.32 8.05 37.16 0.30 -2.02 16 14 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.51 -13.47 7.65 -34.44 -0.26 -13.74 16 16 H 0.06 1.54 5.68 -52.49 -0.30 1.25 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 N -0.53 -7.83 10.39 -12.26 -0.13 -7.96 16 24 C 0.13 1.55 11.11 -17.35 -0.19 1.36 16 25 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.41 1.70 8.82 -40.82 -0.36 1.34 16 29 H 0.14 1.94 6.47 -52.49 -0.34 1.60 16 30 H 0.14 1.95 6.70 -52.49 -0.35 1.60 16 31 H 0.40 6.10 6.29 -40.82 -0.26 5.84 16 32 H 0.06 1.02 7.92 -51.93 -0.41 0.61 16 33 H 0.06 1.00 7.93 -51.93 -0.41 0.59 16 34 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16 35 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 39 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -32.56 348.67 -8.08 -40.64 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.35 Total: 4.60 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.30 Total: -8.96 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.25 Total: -50.22 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.56 -8.08 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320043879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.318 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds