Wall clock time and date at job start Tue Mar 31 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21297 * 120.00328 * 2 1 4 4 N 1.34782 * 119.99634 * 179.97438 * 2 1 3 5 5 C 1.40187 * 119.99605 * 185.26637 * 4 2 1 6 6 C 1.39418 * 120.40515 * 32.67495 * 5 4 2 7 7 C 1.38258 * 118.44507 * 179.97438 * 6 5 4 8 8 C 1.39110 * 119.17274 * 0.02562 * 7 6 5 9 9 N 1.39205 * 119.63137 * 179.97438 * 8 7 6 10 10 C 1.46499 * 120.00204 * 359.97438 * 9 8 7 11 11 C 1.52999 * 109.47161 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47145 * 299.99907 * 11 10 9 13 13 C 1.52999 * 109.46922 * 59.99977 * 11 10 9 14 14 C 1.53000 * 109.46899 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46956 * 180.02562 * 14 11 10 16 16 H 1.07991 * 120.00248 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99866 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00054 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46990 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47242 * 119.99765 * 19 17 15 22 22 H 1.48504 * 109.46974 * 239.99842 * 19 17 15 23 23 N 1.32349 * 120.73542 * 359.97438 * 8 7 6 24 24 C 1.31968 * 121.69700 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.47412 * 269.99780 * 1 2 3 26 26 H 1.09003 * 109.46791 * 29.99895 * 1 2 3 27 27 H 1.08998 * 109.46894 * 150.00158 * 1 2 3 28 28 H 0.96996 * 119.99988 * 5.27296 * 4 2 1 29 29 H 1.07999 * 120.77665 * 359.96185 * 6 5 4 30 30 H 1.07996 * 120.40903 * 179.72577 * 7 6 5 31 31 H 0.97006 * 119.99917 * 179.97438 * 9 8 7 32 32 H 1.08995 * 109.46853 * 300.00014 * 10 9 8 33 33 H 1.09000 * 109.46668 * 59.99826 * 10 9 8 34 34 H 1.08997 * 109.47321 * 60.00384 * 12 11 10 35 35 H 1.09000 * 109.46813 * 179.97438 * 12 11 10 36 36 H 1.08997 * 109.47568 * 299.99960 * 12 11 10 37 37 H 1.09007 * 109.47412 * 60.00476 * 13 11 10 38 38 H 1.09000 * 109.47111 * 179.97438 * 13 11 10 39 39 H 1.08990 * 109.47785 * 300.00032 * 13 11 10 40 40 H 1.09002 * 109.47584 * 300.00415 * 14 11 10 41 41 H 1.09001 * 109.47286 * 60.00336 * 14 11 10 42 42 H 0.97008 * 119.99667 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.62135 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5783 -1.1698 0.1120 6 6 4.2282 -0.1895 0.8605 7 6 5.6077 -0.2308 0.9435 8 6 6.2968 -1.2419 0.2817 9 7 7.6858 -1.2923 0.3584 10 6 8.4138 -0.2839 1.1325 11 6 9.9154 -0.5669 1.0543 12 6 10.2031 -1.9557 1.6278 13 6 10.3688 -0.5141 -0.4060 14 6 10.6756 0.4867 1.8622 15 6 12.1547 0.2083 1.7846 16 1 12.5162 -0.6358 1.2163 17 6 13.0463 1.0308 2.4401 18 7 12.6060 2.0585 3.1326 19 14 14.8797 0.6863 2.3434 20 1 15.1134 -0.5189 1.5078 21 1 15.5711 1.8519 1.7362 22 1 15.4120 0.4516 3.7097 23 7 5.6465 -2.1563 -0.4201 24 6 4.3307 -2.1470 -0.5207 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6989 -2.0055 -0.0763 29 1 3.6672 0.5843 1.3635 30 1 6.1438 0.5153 1.5111 31 1 8.1717 -1.9953 -0.1007 32 1 8.2084 0.7056 0.7242 33 1 8.0910 -0.3218 2.1729 34 1 9.6616 -2.7061 1.0518 35 1 11.2728 -2.1575 1.5716 36 1 9.8801 -1.9934 2.6681 37 1 10.1638 0.4754 -0.8147 38 1 11.4386 -0.7153 -0.4618 39 1 9.8272 -1.2643 -0.9820 40 1 10.4705 1.4761 1.4533 41 1 10.3527 0.4496 2.9026 42 1 13.2333 2.6374 3.5935 43 1 3.8344 -2.9100 -1.1020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320043879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:49 Heat of formation + Delta-G solvation = -32.674469 kcal Electronic energy + Delta-G solvation = -22598.762542 eV Core-core repulsion = 19256.482461 eV Total energy + Delta-G solvation = -3342.280081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72737 -40.37367 -39.08356 -36.45752 -35.18932 -34.03267 -33.15626 -31.19315 -29.45810 -28.65203 -27.98079 -27.19960 -24.98296 -24.71042 -23.15814 -21.53086 -19.91206 -18.86329 -18.37787 -18.34083 -17.96254 -17.20507 -16.52267 -16.28815 -15.95672 -15.54021 -15.44468 -15.01958 -14.97384 -14.58761 -14.38275 -14.10906 -13.95881 -13.93834 -13.50998 -13.23898 -13.06142 -12.92896 -12.69824 -12.67659 -12.35188 -12.23164 -12.04192 -11.95161 -11.53400 -11.20767 -11.01061 -10.85856 -10.71824 -10.56277 -10.51653 -10.12006 -8.32093 -8.14676 -6.21364 0.26462 0.38163 1.40612 1.42211 1.53564 1.65124 2.08515 2.32724 2.45205 2.95055 3.20098 3.67551 3.86344 3.93242 3.98476 4.05802 4.08216 4.22610 4.27406 4.56431 4.67970 4.69367 4.70816 4.72699 4.76757 4.88233 4.95888 5.03402 5.10855 5.12627 5.13344 5.33515 5.43000 5.48467 5.50663 5.55303 5.74830 5.79610 5.89794 6.03107 6.32263 6.50717 6.67957 6.93452 7.17799 7.23699 7.45992 8.97816 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.036384 B = 0.002665 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.378314 B =10503.944650 C =11022.566623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.499 3.501 3 O -0.588 6.588 4 N -0.648 5.648 5 C 0.019 3.981 6 C -0.043 4.043 7 C -0.236 4.236 8 C 0.382 3.618 9 N -0.711 5.711 10 C 0.149 3.851 11 C -0.062 4.062 12 C -0.121 4.121 13 C -0.122 4.122 14 C 0.040 3.960 15 C -0.513 4.513 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.956 3.044 20 H -0.260 1.260 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.545 5.545 24 C 0.135 3.865 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.431 0.569 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.406 0.594 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.060 0.940 40 H -0.010 1.010 41 H -0.008 1.008 42 H 0.260 0.740 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.496 -11.075 -7.108 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.289 3.711 3 O -0.467 6.467 4 N -0.296 5.296 5 C -0.079 4.079 6 C -0.071 4.071 7 C -0.262 4.262 8 C 0.146 3.854 9 N -0.345 5.345 10 C 0.024 3.976 11 C -0.063 4.063 12 C -0.178 4.178 13 C -0.179 4.179 14 C 0.003 3.997 15 C -0.551 4.551 16 H 0.086 0.914 17 C -0.201 4.201 18 N -0.578 5.578 19 Si 0.782 3.218 20 H -0.184 1.184 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.263 5.263 24 C -0.026 4.026 25 H 0.131 0.869 26 H 0.111 0.889 27 H 0.135 0.865 28 H 0.271 0.729 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.244 0.756 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.009 0.991 41 H 0.010 0.990 42 H 0.068 0.932 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.492 -10.696 -7.298 26.824 hybrid contribution 0.835 0.677 0.657 1.260 sum -22.656 -10.018 -6.641 25.647 Atomic orbital electron populations 1.21902 0.86715 1.06725 1.06511 1.21966 0.92727 0.82480 0.73880 1.90748 1.71969 1.33343 1.50665 1.43362 1.03467 1.10610 1.72194 1.18511 0.85346 1.00768 1.03307 1.21331 0.93520 0.97518 0.94690 1.21421 0.94795 1.02260 1.07704 1.18519 0.85817 0.90026 0.91017 1.44608 1.01488 1.32697 1.55670 1.21339 0.91239 0.90394 0.94586 1.20661 0.91806 0.97064 0.96739 1.21671 1.01576 0.94863 0.99687 1.21681 1.01311 1.00512 0.94383 1.18977 0.94477 0.92731 0.93535 1.21608 0.92313 1.11467 1.29678 0.91353 1.25901 1.03534 0.95200 0.95456 1.70111 1.35889 1.17453 1.34316 0.85527 0.80222 0.78303 0.77780 1.18388 1.21030 1.20946 1.67184 1.10488 1.26672 1.21939 1.22715 0.87440 0.97542 0.94895 0.86927 0.88913 0.86525 0.72912 0.85036 0.85287 0.75629 0.93002 0.92589 0.92068 0.92830 0.94016 0.94256 0.92780 0.92112 0.99145 0.98960 0.93161 0.78992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.31 71.24 0.73 -0.17 16 2 C 0.50 8.39 7.71 87.66 0.68 9.07 16 3 O -0.59 -16.76 14.79 -3.08 -0.05 -16.81 16 4 N -0.65 -8.80 5.36 -303.06 -1.62 -10.43 16 5 C 0.02 0.42 6.31 38.18 0.24 0.66 16 6 C -0.04 -1.18 8.76 22.56 0.20 -0.99 16 7 C -0.24 -7.10 9.32 22.48 0.21 -6.89 16 8 C 0.38 11.55 7.65 133.00 1.02 12.57 16 9 N -0.71 -21.52 5.14 -344.96 -1.77 -23.29 16 10 C 0.15 5.08 3.78 86.38 0.33 5.40 16 11 C -0.06 -2.38 0.54 -52.18 -0.03 -2.40 16 12 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 13 C -0.12 -4.35 8.05 71.98 0.58 -3.77 16 14 C 0.04 2.03 4.04 29.85 0.12 2.15 16 15 C -0.51 -27.57 7.65 25.60 0.20 -27.38 16 16 H 0.07 3.51 5.68 -2.92 -0.02 3.49 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 18 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 N -0.55 -14.94 10.39 -192.69 -2.00 -16.94 16 24 C 0.13 2.80 11.11 84.76 0.94 3.74 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 26 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.43 1.83 8.82 -92.71 -0.82 1.01 16 29 H 0.13 3.80 6.47 -2.91 -0.02 3.78 16 30 H 0.13 3.93 6.70 -2.91 -0.02 3.91 16 31 H 0.41 11.61 6.29 -92.70 -0.58 11.03 16 32 H 0.05 1.84 7.92 -2.39 -0.02 1.82 16 33 H 0.06 1.94 7.93 -2.39 -0.02 1.92 16 34 H 0.06 1.79 6.86 -2.39 -0.02 1.77 16 35 H 0.05 2.02 6.62 -2.39 -0.02 2.01 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.05 2.06 6.62 -2.39 -0.02 2.05 16 39 H 0.06 1.81 6.86 -2.39 -0.02 1.80 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 43 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.34 348.67 2.75 -70.59 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.37 Total: 18.63 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 6.25 Total: -11.45 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.11 Total: -106.93 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.34 2.75 -70.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320043879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.916 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds