Wall clock time and date at job start Tue Mar 31 2020 07:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 N 1.46906 * 109.46714 * 180.02562 * 4 3 2 6 6 C 1.47004 * 111.00092 * 293.62969 * 5 4 3 7 7 C 1.53102 * 109.25912 * 177.60836 * 6 5 4 8 8 O 1.43019 * 109.25518 * 56.85094 * 7 6 5 9 9 C 1.43015 * 113.73725 * 301.33093 * 8 7 6 10 10 C 1.47016 * 110.99764 * 169.99722 * 5 4 3 11 11 C 1.38827 * 120.00146 * 180.02562 * 2 1 3 12 12 C 1.39802 * 119.58106 * 4.72354 * 11 2 1 13 13 C 1.38589 * 119.48509 * 179.78985 * 12 11 2 14 14 C 1.38389 * 118.68418 * 0.47756 * 13 12 11 15 15 C 1.40547 * 119.14941 * 359.74751 * 14 13 12 16 16 C 1.41312 * 119.78751 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99841 * 0.02562 * 16 15 14 18 18 C 1.40030 * 120.00650 * 180.02562 * 16 15 14 19 19 N 1.30751 * 119.99233 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47406 * 89.99720 * 20 18 16 22 22 H 1.48501 * 109.47040 * 209.99949 * 20 18 16 23 23 H 1.48501 * 109.47080 * 329.99565 * 20 18 16 24 24 N 1.31950 * 119.58661 * 184.99622 * 11 2 1 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.09000 * 109.47259 * 299.99347 * 4 3 2 31 31 H 1.08999 * 109.47258 * 60.00427 * 4 3 2 32 32 H 1.08997 * 109.51431 * 297.54713 * 6 5 4 33 33 H 1.09005 * 109.50688 * 57.68163 * 6 5 4 34 34 H 1.08994 * 109.50721 * 296.91921 * 7 6 5 35 35 H 1.09002 * 109.54175 * 176.80628 * 7 6 5 36 36 H 1.08996 * 109.50513 * 298.73006 * 9 8 7 37 37 H 1.09003 * 109.53569 * 178.62665 * 9 8 7 38 38 H 1.08998 * 109.50813 * 302.32927 * 10 5 4 39 39 H 1.09001 * 109.50301 * 62.41326 * 10 5 4 40 40 H 1.07996 * 120.25729 * 359.97438 * 12 11 2 41 41 H 1.08003 * 120.65636 * 180.21961 * 13 12 11 42 42 H 1.08000 * 120.42645 * 179.76314 * 14 13 12 43 43 H 0.97005 * 119.99412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1866 2.9829 1.4424 6 6 4.5388 2.8111 0.8920 7 6 5.2453 4.1688 0.8551 8 8 5.2636 4.7269 2.1718 9 6 3.9630 4.9085 2.7382 10 6 3.2436 3.5583 2.7941 11 6 2.1592 -1.2023 -0.0005 12 6 1.4549 -2.4057 -0.1012 13 6 2.1502 -3.6046 -0.1059 14 6 3.5297 -3.5729 -0.0001 15 6 4.1800 -2.3312 0.1031 16 6 5.5881 -2.2830 0.2113 17 1 6.1611 -3.1986 0.2141 18 6 6.2407 -1.0484 0.3148 19 7 5.5470 0.0599 0.3109 20 14 8.1021 -0.9848 0.4571 21 1 8.7000 -0.9062 -0.8999 22 1 8.4979 0.2118 1.2425 23 1 8.5883 -2.2094 1.1421 24 7 3.4748 -1.1949 0.0994 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 1.5002 1.8408 1.9563 31 1 3.0417 0.9507 1.9562 32 1 5.1037 2.1239 1.5219 33 1 4.4720 2.4081 -0.1186 34 1 4.7101 4.8395 0.1830 35 1 6.2679 4.0383 0.5010 36 1 3.3905 5.6007 2.1208 37 1 4.0575 5.3125 3.7462 38 1 2.2312 3.7006 3.1720 39 1 3.7870 2.8826 3.4546 40 1 0.3777 -2.4011 -0.1777 41 1 1.6255 -4.5452 -0.1864 42 1 4.0993 -4.4904 0.0030 43 1 5.9991 0.9152 0.3823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320359004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:34 Heat of formation + Delta-G solvation = 15.016430 kcal Electronic energy + Delta-G solvation = -24442.116927 eV Core-core repulsion = 21101.904879 eV Total energy + Delta-G solvation = -3340.212048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.29756 -38.40059 -36.21308 -34.93158 -33.33428 -30.97085 -30.53293 -29.94274 -28.86704 -26.58937 -25.49473 -24.33943 -23.73287 -21.94831 -21.02891 -20.04145 -19.56038 -17.45431 -16.38653 -16.08931 -15.85198 -14.98875 -14.89729 -14.69286 -14.65226 -14.39197 -14.18189 -13.83182 -13.26968 -13.22173 -12.71081 -12.61228 -12.15253 -12.00103 -11.84896 -11.62634 -11.28785 -11.22552 -11.09891 -11.05501 -10.96371 -10.55453 -10.45106 -10.40226 -10.00323 -9.90626 -9.49950 -9.38736 -8.68482 -7.98822 -7.90262 -7.50026 -6.42151 -6.36382 -4.48277 2.85056 3.10048 3.12351 3.21608 3.27741 3.81305 3.96235 4.04425 4.41415 4.80976 5.10056 5.25905 5.30381 5.39704 5.56781 5.62624 5.69637 5.74029 5.79744 5.88314 5.96096 5.99571 6.07694 6.09245 6.18621 6.21392 6.33038 6.45040 6.58664 6.64186 6.75088 6.84023 6.89242 7.06592 7.21154 7.27407 7.36184 7.43193 7.59909 7.82397 7.94343 8.02227 8.36139 8.53112 8.79260 9.09788 10.20397 10.36264 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.007365 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.033910 B = 3801.016866 C = 5882.588353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.623 5.623 3 C 0.146 3.854 4 C 0.050 3.950 5 N -0.535 5.535 6 C 0.022 3.978 7 C 0.061 3.939 8 O -0.391 6.391 9 C 0.067 3.933 10 C 0.018 3.982 11 C 0.409 3.591 12 C -0.366 4.366 13 C -0.032 4.032 14 C -0.317 4.317 15 C 0.292 3.708 16 C -0.432 4.432 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.715 5.715 20 Si 0.898 3.102 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 N -0.524 5.524 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 8.340 1.908 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.341 5.341 3 C 0.022 3.978 4 C -0.079 4.079 5 N -0.261 5.261 6 C -0.106 4.106 7 C -0.016 4.016 8 O -0.309 6.309 9 C -0.010 4.010 10 C -0.111 4.111 11 C 0.170 3.830 12 C -0.391 4.391 13 C -0.056 4.056 14 C -0.340 4.340 15 C 0.165 3.835 16 C -0.464 4.464 17 H 0.099 0.901 18 C -0.150 4.150 19 N -0.339 5.339 20 Si 0.723 3.277 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 N -0.245 5.245 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.821 9.820 1.775 10.686 hybrid contribution 0.389 -1.532 0.478 1.651 sum -3.433 8.288 2.253 9.250 Atomic orbital electron populations 1.21382 0.80829 1.01322 0.99929 1.45952 1.03491 1.03200 1.81464 1.21062 0.98268 0.83631 0.94884 1.22437 0.96730 0.89157 0.99548 1.62239 1.16472 1.27026 1.20357 1.22914 0.88683 0.96184 1.02840 1.22779 1.00998 0.94009 0.83835 1.87944 1.27804 1.83595 1.31573 1.22586 0.84186 0.95676 0.98552 1.22711 1.00666 0.96619 0.91069 1.18530 0.90354 0.83928 0.90156 1.20645 0.97856 0.92509 1.28126 1.20588 0.94111 0.95658 0.95280 1.21536 0.93997 0.98131 1.20295 1.18197 0.93061 0.85669 0.86558 1.19538 0.90515 0.93318 1.43006 0.90138 1.25979 0.99860 0.95654 0.93480 1.70292 1.36007 0.97912 1.29657 0.86469 0.83210 0.78905 0.79120 1.19482 1.20171 1.18713 1.68227 1.02289 1.29239 1.24706 0.94631 0.92836 0.91942 0.88191 0.93073 0.92855 0.92918 0.92375 0.88300 0.92866 0.88860 0.92708 0.89150 0.90427 0.94258 0.89059 0.89010 0.88845 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 10.05 59.85 0.60 2.33 16 2 N -0.62 -12.52 2.98 -181.68 -0.54 -13.07 16 3 C 0.15 2.77 5.32 -4.04 -0.02 2.74 16 4 C 0.05 0.91 5.28 -3.82 -0.02 0.89 16 5 N -0.54 -8.72 4.73 -234.31 -1.11 -9.83 16 6 C 0.02 0.37 4.12 -3.71 -0.02 0.35 16 7 C 0.06 0.89 7.01 37.21 0.26 1.15 16 8 O -0.39 -6.04 10.83 -35.23 -0.38 -6.42 16 9 C 0.07 0.87 7.01 37.20 0.26 1.13 16 10 C 0.02 0.26 5.64 -3.71 -0.02 0.24 16 11 C 0.41 9.79 7.37 -155.32 -1.14 8.65 16 12 C -0.37 -8.38 9.21 -38.87 -0.36 -8.73 16 13 C -0.03 -0.74 10.15 -39.40 -0.40 -1.14 16 14 C -0.32 -7.92 9.83 -38.66 -0.38 -8.30 16 15 C 0.29 7.88 6.55 -85.00 -0.56 7.33 16 16 C -0.43 -11.32 9.14 -37.74 -0.34 -11.67 16 17 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 18 C 0.07 1.83 5.50 -17.34 -0.10 1.73 16 19 N -0.72 -17.30 10.34 55.55 0.57 -16.72 16 20 Si 0.90 18.33 29.56 -169.99 -5.02 13.31 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 24 N -0.52 -13.72 6.64 -10.33 -0.07 -13.79 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.06 0.97 6.36 -51.93 -0.33 0.64 16 28 H 0.10 2.19 5.82 -51.93 -0.30 1.89 16 29 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.05 1.17 8.12 -51.93 -0.42 0.75 16 32 H 0.06 1.15 6.56 -51.93 -0.34 0.81 16 33 H 0.10 1.81 5.92 -51.93 -0.31 1.50 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.86 6.24 -52.49 -0.33 1.54 16 41 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.27 5.92 5.87 -40.82 -0.24 5.68 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -28.10 338.54 -10.22 -38.32 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.53 Total: 6.39 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.23 Total: -3.29 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -1.14 Total: -53.40 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.38 Total: -6.42 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.10 -10.22 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320359004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.334 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds