Wall clock time and date at job start Tue Mar 31 2020 07:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 N 1.46906 * 109.46714 * 180.02562 * 4 3 2 6 6 C 1.47004 * 111.00092 * 293.62969 * 5 4 3 7 7 C 1.53102 * 109.25912 * 177.60836 * 6 5 4 8 8 O 1.43019 * 109.25518 * 56.85094 * 7 6 5 9 9 C 1.43015 * 113.73725 * 301.33093 * 8 7 6 10 10 C 1.47016 * 110.99764 * 169.99722 * 5 4 3 11 11 C 1.38827 * 120.00146 * 180.02562 * 2 1 3 12 12 C 1.39802 * 119.58106 * 4.72354 * 11 2 1 13 13 C 1.38589 * 119.48509 * 179.78985 * 12 11 2 14 14 C 1.38389 * 118.68418 * 0.47756 * 13 12 11 15 15 C 1.40547 * 119.14941 * 359.74751 * 14 13 12 16 16 C 1.41312 * 119.78751 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99841 * 0.02562 * 16 15 14 18 18 C 1.40030 * 120.00650 * 180.02562 * 16 15 14 19 19 N 1.30751 * 119.99233 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47406 * 89.99720 * 20 18 16 22 22 H 1.48501 * 109.47040 * 209.99949 * 20 18 16 23 23 H 1.48501 * 109.47080 * 329.99565 * 20 18 16 24 24 N 1.31950 * 119.58661 * 184.99622 * 11 2 1 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 29 29 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 30 30 H 1.09000 * 109.47259 * 299.99347 * 4 3 2 31 31 H 1.08999 * 109.47258 * 60.00427 * 4 3 2 32 32 H 1.08997 * 109.51431 * 297.54713 * 6 5 4 33 33 H 1.09005 * 109.50688 * 57.68163 * 6 5 4 34 34 H 1.08994 * 109.50721 * 296.91921 * 7 6 5 35 35 H 1.09002 * 109.54175 * 176.80628 * 7 6 5 36 36 H 1.08996 * 109.50513 * 298.73006 * 9 8 7 37 37 H 1.09003 * 109.53569 * 178.62665 * 9 8 7 38 38 H 1.08998 * 109.50813 * 302.32927 * 10 5 4 39 39 H 1.09001 * 109.50301 * 62.41326 * 10 5 4 40 40 H 1.07996 * 120.25729 * 359.97438 * 12 11 2 41 41 H 1.08003 * 120.65636 * 180.21961 * 13 12 11 42 42 H 1.08000 * 120.42645 * 179.76314 * 14 13 12 43 43 H 0.97005 * 119.99412 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1866 2.9829 1.4424 6 6 4.5388 2.8111 0.8920 7 6 5.2453 4.1688 0.8551 8 8 5.2636 4.7269 2.1718 9 6 3.9630 4.9085 2.7382 10 6 3.2436 3.5583 2.7941 11 6 2.1592 -1.2023 -0.0005 12 6 1.4549 -2.4057 -0.1012 13 6 2.1502 -3.6046 -0.1059 14 6 3.5297 -3.5729 -0.0001 15 6 4.1800 -2.3312 0.1031 16 6 5.5881 -2.2830 0.2113 17 1 6.1611 -3.1986 0.2141 18 6 6.2407 -1.0484 0.3148 19 7 5.5470 0.0599 0.3109 20 14 8.1021 -0.9848 0.4571 21 1 8.7000 -0.9062 -0.8999 22 1 8.4979 0.2118 1.2425 23 1 8.5883 -2.2094 1.1421 24 7 3.4748 -1.1949 0.0994 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 3.1499 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5139 30 1 1.5002 1.8408 1.9563 31 1 3.0417 0.9507 1.9562 32 1 5.1037 2.1239 1.5219 33 1 4.4720 2.4081 -0.1186 34 1 4.7101 4.8395 0.1830 35 1 6.2679 4.0383 0.5010 36 1 3.3905 5.6007 2.1208 37 1 4.0575 5.3125 3.7462 38 1 2.2312 3.7006 3.1720 39 1 3.7870 2.8826 3.4546 40 1 0.3777 -2.4011 -0.1777 41 1 1.6255 -4.5452 -0.1864 42 1 4.0993 -4.4904 0.0030 43 1 5.9991 0.9152 0.3823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320359004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:33 Heat of formation + Delta-G solvation = -1.733130 kcal Electronic energy + Delta-G solvation = -24442.843243 eV Core-core repulsion = 21101.904879 eV Total energy + Delta-G solvation = -3340.938364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.60343 -40.09420 -37.72747 -36.39403 -35.12197 -32.34301 -32.15278 -31.60770 -30.45213 -27.97619 -27.22816 -25.84979 -24.95236 -23.57189 -22.74840 -21.40587 -21.17321 -19.26921 -17.89025 -17.53748 -17.06018 -16.61514 -16.40283 -16.14254 -15.92834 -15.86132 -15.79449 -15.35669 -14.85518 -14.75180 -14.18516 -14.11571 -13.70670 -13.66014 -13.20238 -13.00247 -12.86128 -12.76779 -12.69459 -12.48765 -12.38443 -12.18560 -12.11792 -11.75074 -11.65078 -11.40989 -11.20613 -10.67212 -10.40646 -9.76103 -9.42276 -9.33646 -8.19538 -8.12717 -6.41966 1.07446 1.36502 1.40380 1.50170 1.56023 2.24231 2.35254 2.90541 2.93963 3.08327 3.93432 4.05102 4.07667 4.12413 4.22598 4.26566 4.29366 4.39744 4.49598 4.53043 4.60409 4.65465 4.72548 4.75367 4.83879 4.87542 4.91816 4.97786 5.01375 5.01955 5.05912 5.14710 5.23342 5.36110 5.40342 5.75679 5.92651 6.00808 6.05284 6.14538 6.20140 6.21665 6.63524 6.71427 6.93965 7.23243 8.36106 8.52080 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.007365 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.033910 B = 3801.016866 C = 5882.588353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.625 5.625 3 C 0.151 3.849 4 C 0.068 3.932 5 N -0.527 5.527 6 C 0.031 3.969 7 C 0.066 3.934 8 O -0.407 6.407 9 C 0.067 3.933 10 C 0.016 3.984 11 C 0.390 3.610 12 C -0.369 4.369 13 C -0.031 4.031 14 C -0.348 4.348 15 C 0.259 3.741 16 C -0.467 4.467 17 H 0.078 0.922 18 C 0.033 3.967 19 N -0.726 5.726 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.263 1.263 24 N -0.545 5.545 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.003 0.997 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.016 0.984 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 10.180 2.059 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.342 5.342 3 C 0.027 3.973 4 C -0.062 4.062 5 N -0.252 5.252 6 C -0.098 4.098 7 C -0.010 4.010 8 O -0.326 6.326 9 C -0.009 4.009 10 C -0.112 4.112 11 C 0.150 3.850 12 C -0.395 4.395 13 C -0.055 4.055 14 C -0.371 4.371 15 C 0.132 3.868 16 C -0.499 4.499 17 H 0.096 0.904 18 C -0.191 4.191 19 N -0.349 5.349 20 Si 0.789 3.211 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.187 1.187 24 N -0.267 5.267 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.022 0.978 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.034 0.966 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.114 0.886 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.080 11.681 1.925 12.882 hybrid contribution 0.621 -2.063 0.445 2.199 sum -4.460 9.618 2.369 10.863 Atomic orbital electron populations 1.21631 0.77977 1.02853 1.01301 1.46218 1.05200 1.02241 1.80580 1.20986 0.97232 0.83840 0.95236 1.22186 0.96768 0.88670 0.98529 1.62306 1.15769 1.25515 1.21640 1.22744 0.88924 0.97018 1.01073 1.22767 1.01458 0.92634 0.84188 1.87928 1.29457 1.83424 1.31795 1.22792 0.83126 0.94784 1.00246 1.22859 1.02081 0.96915 0.89374 1.19000 0.90206 0.85906 0.89847 1.20998 0.99291 0.92094 1.27072 1.20966 0.93482 0.97313 0.93786 1.21672 0.95289 0.97733 1.22380 1.18631 0.93927 0.86818 0.87393 1.19790 0.90945 0.94199 1.44969 0.90398 1.26703 1.04162 0.94983 0.93219 1.70367 1.37654 0.98288 1.28577 0.85423 0.77617 0.78808 0.79249 1.18738 1.19516 1.18734 1.68215 1.03604 1.29227 1.25627 0.93175 0.89999 0.91745 0.91524 0.90511 0.91065 0.97832 0.95862 0.89983 0.91113 0.88017 0.91024 0.86589 0.88039 0.96561 0.86249 0.85707 0.88564 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.02 10.05 127.77 1.28 4.30 16 2 N -0.63 -24.59 2.98 -728.72 -2.17 -26.76 16 3 C 0.15 5.68 5.32 86.38 0.46 6.14 16 4 C 0.07 2.45 5.28 86.30 0.46 2.91 16 5 N -0.53 -16.76 4.73 -895.23 -4.23 -20.99 16 6 C 0.03 1.06 4.12 86.32 0.36 1.42 16 7 C 0.07 1.87 7.01 72.02 0.50 2.38 16 8 O -0.41 -11.88 10.83 -148.98 -1.61 -13.50 16 9 C 0.07 1.55 7.01 72.01 0.50 2.06 16 10 C 0.02 0.44 5.64 86.31 0.49 0.93 16 11 C 0.39 18.84 7.37 133.42 0.98 19.82 16 12 C -0.37 -16.61 9.21 22.73 0.21 -16.40 16 13 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 14 C -0.35 -17.94 9.83 22.87 0.22 -17.72 16 15 C 0.26 14.63 6.55 40.17 0.26 14.89 16 16 C -0.47 -25.71 9.14 23.46 0.21 -25.49 16 17 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 18 C 0.03 1.66 5.50 85.29 0.47 2.12 16 19 N -0.73 -36.66 10.34 21.84 0.23 -36.43 16 20 Si 0.97 38.68 29.56 68.60 2.03 40.71 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 N -0.54 -29.62 6.64 -186.59 -1.24 -30.86 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.89 8.07 -2.39 -0.02 1.87 16 27 H 0.06 1.83 6.36 -2.38 -0.02 1.81 16 28 H 0.07 3.00 5.82 -2.39 -0.01 2.99 16 29 H 0.08 2.47 8.07 -2.38 -0.02 2.46 16 30 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 31 H 0.00 0.15 8.12 -2.39 -0.02 0.13 16 32 H 0.02 0.96 6.56 -2.39 -0.02 0.94 16 33 H 0.08 3.10 5.92 -2.38 -0.01 3.09 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 39 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.12 4.59 6.24 -2.91 -0.02 4.57 16 41 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 42 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.27 12.65 5.87 -92.70 -0.54 12.11 16 Total: -1.00 -63.76 338.54 0.85 -62.90 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 1.22 Total: 28.79 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 6.64 Total: -3.86 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -7.42 Total: -115.05 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.61 Total: -13.50 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -63.76 0.85 -62.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320359004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.169 kcal (2) G-P(sol) polarization free energy of solvation -63.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds