Wall clock time and date at job start Tue Mar 31 2020 06:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47252 * 2 1 4 4 C 1.34771 * 120.00389 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99765 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00596 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47003 * 59.99358 * 6 4 3 8 8 C 1.53009 * 109.46615 * 299.99905 * 6 4 3 9 9 C 1.52999 * 109.47450 * 180.02562 * 6 4 3 10 10 N 1.46496 * 109.46855 * 179.97438 * 9 6 4 11 11 C 1.38823 * 119.99790 * 179.97438 * 10 9 6 12 12 C 1.39803 * 119.58538 * 0.02562 * 11 10 9 13 13 C 1.38590 * 119.48949 * 180.02562 * 12 11 10 14 14 C 1.38384 * 118.68545 * 359.97438 * 13 12 11 15 15 C 1.40552 * 119.14736 * 0.02562 * 14 13 12 16 16 C 1.41323 * 119.78413 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99816 * 7.19465 * 16 15 14 18 18 C 1.40028 * 119.99880 * 187.18977 * 16 15 14 19 19 N 1.30747 * 120.00036 * 7.20797 * 18 16 15 20 20 Si 1.86800 * 119.99586 * 186.92785 * 18 16 15 21 21 H 1.48494 * 109.47153 * 265.29181 * 20 18 16 22 22 H 1.48497 * 109.47286 * 25.29783 * 20 18 16 23 23 H 1.48511 * 109.46585 * 145.29571 * 20 18 16 24 24 N 1.31951 * 119.58769 * 180.29685 * 11 10 9 25 25 H 1.09005 * 109.47387 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46945 * 299.99824 * 1 2 3 27 27 H 1.08994 * 109.47337 * 59.99782 * 1 2 3 28 28 H 1.08998 * 109.47171 * 239.99913 * 2 1 3 29 29 H 1.09007 * 109.47018 * 120.00368 * 2 1 3 30 30 H 0.96999 * 119.99771 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46785 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47668 * 300.00440 * 7 6 4 33 33 H 1.09003 * 109.46993 * 60.00782 * 7 6 4 34 34 H 1.08998 * 109.47008 * 299.99737 * 8 6 4 35 35 H 1.08999 * 109.46908 * 59.99652 * 8 6 4 36 36 H 1.08995 * 109.46865 * 180.02562 * 8 6 4 37 37 H 1.08998 * 109.47497 * 59.99452 * 9 6 4 38 38 H 1.09003 * 109.46947 * 299.99463 * 9 6 4 39 39 H 0.96998 * 120.00236 * 0.02562 * 10 9 6 40 40 H 1.07997 * 120.25046 * 0.04363 * 12 11 10 41 41 H 1.08008 * 120.65600 * 179.97438 * 13 12 11 42 42 H 1.08000 * 120.42520 * 180.02562 * 14 13 12 43 43 H 0.96998 * 119.99668 * 179.72260 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8458 3.0483 0.0001 7 6 3.3363 3.7688 1.2499 8 6 3.3351 3.7702 -1.2486 9 6 5.3758 3.0483 -0.0014 10 7 5.8640 4.4295 -0.0014 11 6 7.2289 4.6832 -0.0021 12 6 8.1297 3.6140 -0.0032 13 6 9.4918 3.8695 -0.0033 14 6 9.9208 5.1852 -0.0028 15 6 8.9660 6.2166 -0.0017 16 6 9.3892 7.5650 -0.0006 17 1 10.4362 7.8024 -0.1178 18 6 8.4509 8.5931 0.1523 19 7 7.2069 8.3062 0.4345 20 14 8.9783 10.3748 -0.0391 21 1 9.2995 10.9421 1.2951 22 1 10.1798 10.4447 -0.9091 23 1 7.8747 11.1541 -0.6557 24 7 7.6598 5.9303 0.0038 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3880 2.1184 -0.0004 31 1 3.6994 4.7966 1.2500 32 1 2.2464 3.7689 1.2504 33 1 3.7001 3.2545 2.1394 34 1 3.6980 3.2569 -2.1390 35 1 2.2451 3.7702 -1.2481 36 1 3.6989 4.7977 -1.2485 37 1 5.7383 2.5350 -0.8920 38 1 5.7399 2.5339 0.8880 39 1 5.2337 5.1667 -0.0002 40 1 7.7668 2.5968 -0.0043 41 1 10.2044 3.0579 -0.0038 42 1 10.9758 5.4165 -0.0033 43 1 6.5578 9.0186 0.5444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320491779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:21 Heat of formation + Delta-G solvation = -12.179196 kcal Electronic energy + Delta-G solvation = -23128.602805 eV Core-core repulsion = 19787.211466 eV Total energy + Delta-G solvation = -3341.391339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32415 -38.22145 -36.50624 -35.43375 -33.83046 -32.72576 -30.60091 -30.23991 -28.65855 -27.39909 -25.71989 -25.30164 -23.91266 -22.06851 -21.41881 -20.40271 -19.22160 -17.32318 -17.06958 -16.45983 -15.76567 -15.75590 -14.85306 -14.68190 -14.65591 -14.22840 -13.85447 -13.68970 -13.61280 -13.09803 -12.81214 -12.70066 -12.57943 -12.20270 -12.18382 -12.13778 -11.80244 -11.78297 -11.70377 -11.22946 -11.01592 -10.93930 -10.83373 -10.53082 -10.36374 -9.90155 -9.70069 -9.39922 -9.24794 -8.80654 -7.85893 -7.44371 -6.47046 -6.31464 -4.40381 2.59005 2.91455 2.97767 3.13288 3.17447 3.30123 3.34757 4.01731 4.25473 4.54020 4.64672 4.75386 4.80747 4.83661 4.89468 5.00554 5.11235 5.48029 5.48535 5.59110 5.66370 5.71277 5.73580 5.78810 6.01216 6.14087 6.15538 6.20110 6.23960 6.27919 6.29910 6.68859 6.92949 6.96405 7.01045 7.28962 7.32411 7.66773 7.87873 7.99215 8.12498 8.22518 8.42052 8.73677 8.85815 9.17648 10.28417 10.44592 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.003404 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.045197 B = 8222.952432 C = 9114.142931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.732 5.732 4 C 0.529 3.471 5 O -0.534 6.534 6 C -0.092 4.092 7 C -0.139 4.139 8 C -0.139 4.139 9 C 0.167 3.833 10 N -0.737 5.737 11 C 0.412 3.588 12 C -0.363 4.363 13 C -0.032 4.032 14 C -0.317 4.317 15 C 0.296 3.704 16 C -0.438 4.438 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.721 5.721 20 Si 0.903 3.097 21 H -0.271 1.271 22 H -0.262 1.262 23 H -0.277 1.277 24 N -0.535 5.535 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.400 0.600 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.393 0.607 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 -8.715 -0.525 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.386 5.386 4 C 0.314 3.686 5 O -0.409 6.409 6 C -0.095 4.095 7 C -0.197 4.197 8 C -0.197 4.197 9 C 0.041 3.959 10 N -0.375 5.375 11 C 0.173 3.827 12 C -0.389 4.389 13 C -0.056 4.056 14 C -0.340 4.340 15 C 0.168 3.832 16 C -0.471 4.471 17 H 0.100 0.900 18 C -0.150 4.150 19 N -0.343 5.343 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.186 1.186 23 H -0.202 1.202 24 N -0.256 5.256 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.229 0.771 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.644 -8.836 -0.468 17.973 hybrid contribution 0.219 0.596 -0.055 0.638 sum -15.424 -8.240 -0.523 17.495 Atomic orbital electron populations 1.22005 0.94526 1.03171 1.02522 1.21286 0.94106 0.83226 1.02429 1.46030 1.07237 1.08730 1.76561 1.20470 0.82024 0.91022 0.75058 1.90719 1.55264 1.46329 1.48619 1.20972 0.97827 0.92255 0.98459 1.21855 1.00283 1.01784 0.95757 1.21856 1.00299 1.01720 0.95792 1.20757 0.88854 0.84459 1.01818 1.44119 1.03940 1.05233 1.84212 1.18443 0.83742 0.90606 0.89941 1.20670 0.93547 0.96786 1.27905 1.20610 0.94306 0.95548 0.95148 1.21531 0.98645 0.93217 1.20639 1.18166 0.85834 0.92849 0.86302 1.19541 0.94799 0.89475 1.43256 0.89951 1.26006 0.94594 1.00989 0.93372 1.70100 1.02379 1.33415 1.28395 0.86394 0.79479 0.82146 0.79200 1.19676 1.18562 1.20229 1.68115 1.16773 1.15554 1.25161 0.90846 0.91970 0.91972 0.91547 0.91539 0.76556 0.90396 0.92463 0.91890 0.91906 0.92444 0.90469 0.92327 0.92315 0.77088 0.88997 0.88953 0.88748 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 10.03 37.16 0.37 -0.47 16 2 C 0.11 0.94 6.39 -4.04 -0.03 0.91 16 3 N -0.73 -6.81 5.34 -60.30 -0.32 -7.13 16 4 C 0.53 6.96 6.48 -10.99 -0.07 6.89 16 5 O -0.53 -9.19 15.98 5.55 0.09 -9.10 16 6 C -0.09 -1.17 0.63 -155.66 -0.10 -1.27 16 7 C -0.14 -1.58 8.20 37.16 0.30 -1.27 16 8 C -0.14 -1.56 8.20 37.16 0.30 -1.26 16 9 C 0.17 2.87 3.06 -4.04 -0.01 2.86 16 10 N -0.74 -14.80 5.12 -60.39 -0.31 -15.11 16 11 C 0.41 10.31 7.65 -155.32 -1.19 9.12 16 12 C -0.36 -8.83 9.34 -38.87 -0.36 -9.19 16 13 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 14 C -0.32 -8.28 9.83 -38.66 -0.38 -8.66 16 15 C 0.30 8.39 6.52 -85.00 -0.55 7.84 16 16 C -0.44 -12.06 9.13 -37.74 -0.34 -12.40 16 17 H 0.08 2.13 7.86 -52.49 -0.41 1.72 16 18 C 0.08 1.94 5.47 -17.34 -0.09 1.84 16 19 N -0.72 -19.15 11.56 55.55 0.64 -18.51 16 20 Si 0.90 18.86 29.57 -169.99 -5.03 13.84 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 N -0.53 -14.93 7.99 -10.33 -0.08 -15.01 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.40 2.69 7.31 -40.82 -0.30 2.40 16 31 H 0.08 0.98 6.86 -51.93 -0.36 0.62 16 32 H 0.06 0.48 7.57 -51.93 -0.39 0.08 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 36 H 0.08 0.95 6.86 -51.93 -0.36 0.59 16 37 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 38 H 0.06 1.09 7.88 -51.93 -0.41 0.68 16 39 H 0.39 7.60 6.28 -40.82 -0.26 7.34 16 40 H 0.09 2.08 6.68 -52.49 -0.35 1.73 16 41 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 42 H 0.09 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -32.48 352.09 -8.83 -41.30 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.57 Total: 10.65 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.55 Total: -6.24 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.07 Total: -55.75 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.48 -8.83 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320491779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.124 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds