Wall clock time and date at job start Tue Mar 31 2020 06:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47252 * 2 1 4 4 C 1.34771 * 120.00389 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99765 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00596 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47003 * 59.99358 * 6 4 3 8 8 C 1.53009 * 109.46615 * 299.99905 * 6 4 3 9 9 C 1.52999 * 109.47450 * 180.02562 * 6 4 3 10 10 N 1.46496 * 109.46855 * 179.97438 * 9 6 4 11 11 C 1.38823 * 119.99790 * 179.97438 * 10 9 6 12 12 C 1.39803 * 119.58538 * 0.02562 * 11 10 9 13 13 C 1.38590 * 119.48949 * 180.02562 * 12 11 10 14 14 C 1.38384 * 118.68545 * 359.97438 * 13 12 11 15 15 C 1.40552 * 119.14736 * 0.02562 * 14 13 12 16 16 C 1.41323 * 119.78413 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99816 * 7.19465 * 16 15 14 18 18 C 1.40028 * 119.99880 * 187.18977 * 16 15 14 19 19 N 1.30747 * 120.00036 * 7.20797 * 18 16 15 20 20 Si 1.86800 * 119.99586 * 186.92785 * 18 16 15 21 21 H 1.48494 * 109.47153 * 265.29181 * 20 18 16 22 22 H 1.48497 * 109.47286 * 25.29783 * 20 18 16 23 23 H 1.48511 * 109.46585 * 145.29571 * 20 18 16 24 24 N 1.31951 * 119.58769 * 180.29685 * 11 10 9 25 25 H 1.09005 * 109.47387 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46945 * 299.99824 * 1 2 3 27 27 H 1.08994 * 109.47337 * 59.99782 * 1 2 3 28 28 H 1.08998 * 109.47171 * 239.99913 * 2 1 3 29 29 H 1.09007 * 109.47018 * 120.00368 * 2 1 3 30 30 H 0.96999 * 119.99771 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46785 * 180.02562 * 7 6 4 32 32 H 1.08996 * 109.47668 * 300.00440 * 7 6 4 33 33 H 1.09003 * 109.46993 * 60.00782 * 7 6 4 34 34 H 1.08998 * 109.47008 * 299.99737 * 8 6 4 35 35 H 1.08999 * 109.46908 * 59.99652 * 8 6 4 36 36 H 1.08995 * 109.46865 * 180.02562 * 8 6 4 37 37 H 1.08998 * 109.47497 * 59.99452 * 9 6 4 38 38 H 1.09003 * 109.46947 * 299.99463 * 9 6 4 39 39 H 0.96998 * 120.00236 * 0.02562 * 10 9 6 40 40 H 1.07997 * 120.25046 * 0.04363 * 12 11 10 41 41 H 1.08008 * 120.65600 * 179.97438 * 13 12 11 42 42 H 1.08000 * 120.42520 * 180.02562 * 14 13 12 43 43 H 0.96998 * 119.99668 * 179.72260 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0005 6 6 3.8458 3.0483 0.0001 7 6 3.3363 3.7688 1.2499 8 6 3.3351 3.7702 -1.2486 9 6 5.3758 3.0483 -0.0014 10 7 5.8640 4.4295 -0.0014 11 6 7.2289 4.6832 -0.0021 12 6 8.1297 3.6140 -0.0032 13 6 9.4918 3.8695 -0.0033 14 6 9.9208 5.1852 -0.0028 15 6 8.9660 6.2166 -0.0017 16 6 9.3892 7.5650 -0.0006 17 1 10.4362 7.8024 -0.1178 18 6 8.4509 8.5931 0.1523 19 7 7.2069 8.3062 0.4345 20 14 8.9783 10.3748 -0.0391 21 1 9.2995 10.9421 1.2951 22 1 10.1798 10.4447 -0.9091 23 1 7.8747 11.1541 -0.6557 24 7 7.6598 5.9303 0.0038 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3880 2.1184 -0.0004 31 1 3.6994 4.7966 1.2500 32 1 2.2464 3.7689 1.2504 33 1 3.7001 3.2545 2.1394 34 1 3.6980 3.2569 -2.1390 35 1 2.2451 3.7702 -1.2481 36 1 3.6989 4.7977 -1.2485 37 1 5.7383 2.5350 -0.8920 38 1 5.7399 2.5339 0.8880 39 1 5.2337 5.1667 -0.0002 40 1 7.7668 2.5968 -0.0043 41 1 10.2044 3.0579 -0.0038 42 1 10.9758 5.4165 -0.0033 43 1 6.5578 9.0186 0.5444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320491779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:21 Heat of formation + Delta-G solvation = -33.394178 kcal Electronic energy + Delta-G solvation = -23129.522756 eV Core-core repulsion = 19787.211466 eV Total energy + Delta-G solvation = -3342.311290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41961 -40.07898 -37.85426 -36.35112 -35.60120 -34.38316 -32.29233 -31.36334 -30.38835 -28.33507 -27.28082 -27.08856 -24.78382 -23.39438 -23.05456 -22.09640 -20.38420 -19.20020 -18.55417 -17.57011 -17.05835 -16.65395 -16.58231 -16.36771 -15.91135 -15.75265 -15.16843 -15.04230 -14.84194 -14.58506 -14.33124 -14.07347 -13.68576 -13.31575 -13.31189 -13.20904 -12.98224 -12.80697 -12.71058 -12.67827 -12.59705 -12.37903 -12.24646 -12.13448 -11.85559 -11.75378 -11.24741 -10.79960 -10.67640 -10.12423 -9.85317 -9.44864 -8.35907 -8.23113 -6.45610 1.05791 1.32673 1.43498 1.54440 1.56091 1.60376 2.02583 2.27051 2.74142 2.92486 3.45498 3.71754 3.76492 4.02453 4.05399 4.17938 4.23426 4.36839 4.52919 4.60109 4.61450 4.71071 4.71736 4.82165 4.83476 4.91643 4.94283 4.99593 5.00336 5.06973 5.10678 5.21934 5.24824 5.28223 5.37715 5.44867 5.71481 5.95616 6.04681 6.24233 6.48144 6.53125 6.84494 6.93989 7.18514 7.22330 8.31945 8.51502 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.003404 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.045197 B = 8222.952432 C = 9114.142931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 N -0.711 5.711 4 C 0.529 3.471 5 O -0.582 6.582 6 C -0.082 4.082 7 C -0.135 4.135 8 C -0.135 4.135 9 C 0.170 3.830 10 N -0.723 5.723 11 C 0.399 3.601 12 C -0.373 4.373 13 C -0.030 4.030 14 C -0.343 4.343 15 C 0.262 3.738 16 C -0.472 4.472 17 H 0.086 0.914 18 C 0.029 3.971 19 N -0.752 5.752 20 Si 0.986 3.014 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.267 1.267 24 N -0.562 5.562 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.416 0.584 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.397 0.603 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.625 -8.106 -0.632 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.015 4.015 3 N -0.365 5.365 4 C 0.315 3.685 5 O -0.461 6.461 6 C -0.086 4.086 7 C -0.193 4.193 8 C -0.193 4.193 9 C 0.045 3.955 10 N -0.360 5.360 11 C 0.158 3.842 12 C -0.398 4.398 13 C -0.054 4.054 14 C -0.366 4.366 15 C 0.135 3.865 16 C -0.504 4.504 17 H 0.104 0.896 18 C -0.193 4.193 19 N -0.374 5.374 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.191 1.191 24 N -0.285 5.285 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.254 0.746 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.234 0.766 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.898 -8.247 -0.573 19.715 hybrid contribution 0.826 0.282 -0.010 0.873 sum -17.071 -7.965 -0.583 18.847 Atomic orbital electron populations 1.21957 0.91556 1.04261 1.03458 1.21421 0.96422 0.82167 1.01462 1.45904 1.06043 1.10032 1.74472 1.20453 0.83005 0.90328 0.74734 1.90704 1.56736 1.47477 1.51212 1.20852 0.94513 0.92957 1.00275 1.21850 1.02751 1.00411 0.94277 1.21853 1.02755 1.00396 0.94278 1.20763 0.92299 0.82313 1.00151 1.44140 1.02335 1.06633 1.82895 1.18852 0.85714 0.90256 0.89412 1.20925 0.93862 0.97330 1.27717 1.20978 0.94971 0.95886 0.93593 1.21692 0.98917 0.93768 1.22186 1.18665 0.86718 0.94078 0.87080 1.19904 0.95613 0.90209 1.44625 0.89578 1.26923 0.94345 1.05571 0.92424 1.70171 1.03506 1.35444 1.28239 0.85149 0.79170 0.75618 0.79408 1.18774 1.18283 1.19108 1.68118 1.16930 1.16864 1.26613 0.89759 0.91000 0.90974 0.92587 0.92613 0.74622 0.91606 0.88502 0.92952 0.92847 0.88505 0.91595 0.93876 0.94020 0.76617 0.87661 0.85670 0.87824 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.03 71.98 0.72 -0.39 16 2 C 0.11 1.61 6.39 86.38 0.55 2.16 16 3 N -0.71 -11.60 5.34 -463.07 -2.47 -14.08 16 4 C 0.53 13.44 6.48 87.66 0.57 14.01 16 5 O -0.58 -20.30 15.98 -3.04 -0.05 -20.35 16 6 C -0.08 -2.04 0.63 -52.93 -0.03 -2.07 16 7 C -0.14 -2.85 8.20 71.98 0.59 -2.26 16 8 C -0.14 -2.81 8.20 71.99 0.59 -2.22 16 9 C 0.17 5.97 3.06 86.38 0.26 6.24 16 10 N -0.72 -29.68 5.12 -344.99 -1.77 -31.45 16 11 C 0.40 20.45 7.65 133.42 1.02 21.47 16 12 C -0.37 -18.42 9.34 22.73 0.21 -18.20 16 13 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 14 C -0.34 -18.31 9.83 22.87 0.22 -18.08 16 15 C 0.26 15.32 6.52 40.18 0.26 15.58 16 16 C -0.47 -26.56 9.13 23.46 0.21 -26.34 16 17 H 0.09 4.57 7.86 -2.91 -0.02 4.55 16 18 C 0.03 1.53 5.47 85.29 0.47 1.99 16 19 N -0.75 -40.38 11.56 21.84 0.25 -40.12 16 20 Si 0.99 38.60 29.57 68.60 2.03 40.63 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 24 N -0.56 -32.37 7.99 -186.58 -1.49 -33.86 16 25 H 0.08 0.47 8.14 -2.38 -0.02 0.46 16 26 H 0.07 0.41 8.14 -2.38 -0.02 0.40 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.42 4.03 7.31 -92.71 -0.68 3.35 16 31 H 0.06 1.58 6.86 -2.38 -0.02 1.56 16 32 H 0.10 1.26 7.57 -2.39 -0.02 1.24 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.24 7.56 -2.39 -0.02 1.22 16 36 H 0.07 1.55 6.86 -2.39 -0.02 1.53 16 37 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 38 H 0.04 1.61 7.88 -2.39 -0.02 1.59 16 39 H 0.40 15.61 6.28 -92.71 -0.58 15.03 16 40 H 0.11 4.83 6.68 -2.91 -0.02 4.81 16 41 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 42 H 0.10 5.15 8.06 -2.91 -0.02 5.13 16 43 H 0.28 13.37 8.29 -92.71 -0.77 12.60 16 Total: -1.00 -73.41 352.09 2.14 -71.27 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.24 Total: 37.33 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.88 Total: -9.37 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.48 Total: -119.51 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -73.41 2.14 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320491779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.871 kcal (2) G-P(sol) polarization free energy of solvation -73.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds