Wall clock time and date at job start Tue Mar 31 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99837 * 2 1 4 4 C 1.39674 * 120.00419 * 180.02562 * 2 1 3 5 5 C 1.38910 * 120.07187 * 354.28206 * 4 2 1 6 6 C 1.38110 * 119.92746 * 180.02562 * 5 4 2 7 7 C 1.38296 * 120.07041 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.92114 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47001 * 90.00105 * 8 7 6 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00002 * 179.97438 * 10 9 8 12 12 O 1.21584 * 119.99866 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99703 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46971 * 180.02562 * 14 13 11 16 16 H 1.07993 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99754 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00422 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99748 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47436 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47138 * 119.99885 * 19 17 15 22 22 H 1.48503 * 109.47166 * 240.00005 * 19 17 15 23 23 C 1.38287 * 120.14762 * 0.27638 * 7 6 5 24 24 C 1.38103 * 120.07568 * 359.44237 * 23 7 6 25 25 H 1.09005 * 109.46774 * 185.05673 * 1 2 3 26 26 H 1.09001 * 109.46948 * 305.04881 * 1 2 3 27 27 H 1.08998 * 109.47374 * 65.05565 * 1 2 3 28 28 H 1.09003 * 109.46962 * 270.00363 * 3 2 1 29 29 H 1.08995 * 109.46551 * 30.00565 * 3 2 1 30 30 H 1.08996 * 109.46696 * 150.00667 * 3 2 1 31 31 H 1.07997 * 120.03942 * 0.04581 * 5 4 2 32 32 H 1.07997 * 119.96780 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46551 * 209.99760 * 8 7 6 34 34 H 1.08998 * 109.47565 * 329.99726 * 8 7 6 35 35 H 1.08994 * 109.47326 * 299.99548 * 9 8 7 36 36 H 1.08998 * 109.46919 * 60.00332 * 9 8 7 37 37 H 0.97001 * 120.00011 * 0.02562 * 10 9 8 38 38 H 0.97001 * 120.00193 * 0.02562 * 13 11 10 39 39 H 1.08999 * 109.47464 * 300.00131 * 14 13 11 40 40 H 1.09006 * 109.47268 * 60.00104 * 14 13 11 41 41 H 0.96996 * 119.99837 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.95667 * 179.70387 * 23 7 6 43 43 H 1.07999 * 120.03769 * 180.27949 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4756 -2.4105 0.1187 6 6 2.1693 -3.6048 0.1183 7 6 3.5472 -3.6058 0.0000 8 6 4.3008 -4.9108 0.0006 9 6 4.4325 -5.4243 -1.4347 10 7 5.1656 -6.6927 -1.4341 11 6 5.4024 -7.3346 -2.5953 12 8 5.0081 -6.8608 -3.6433 13 7 6.0764 -8.5017 -2.5948 14 6 6.3334 -9.1997 -3.8569 15 6 7.0975 -10.4693 -3.5822 16 1 7.3653 -10.7299 -2.5690 17 6 7.4556 -11.2976 -4.6247 18 7 7.1299 -10.9800 -5.8587 19 14 8.4034 -12.8709 -4.2843 20 1 8.6443 -12.9978 -2.8245 21 1 7.6146 -14.0364 -4.7584 22 1 9.7042 -12.8297 -4.9994 23 6 4.2355 -2.4116 -0.1126 24 6 3.5475 -1.2142 -0.1188 25 1 -0.3633 -1.0237 0.0906 26 1 -0.3633 0.5902 0.8413 27 1 -0.3634 0.4334 -0.9318 28 1 2.3791 1.5835 -1.0277 29 1 1.6084 2.0283 0.5139 30 1 3.1499 1.1384 0.5137 31 1 0.3996 -2.4105 0.2112 32 1 1.6353 -4.5389 0.2114 33 1 5.2934 -4.7569 0.4239 34 1 3.7595 -5.6427 0.6001 35 1 3.4400 -5.5781 -1.8580 36 1 4.9738 -4.6924 -2.0341 37 1 5.4799 -7.0709 -0.5980 38 1 6.3907 -8.8799 -1.7586 39 1 5.3856 -9.4432 -4.3369 40 1 6.9193 -8.5576 -4.5145 41 1 7.3815 -11.5630 -6.5920 42 1 5.3119 -2.4158 -0.2001 43 1 4.0852 -0.2822 -0.2113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320916845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:17 Heat of formation + Delta-G solvation = -2.461752 kcal Electronic energy + Delta-G solvation = -21660.876856 eV Core-core repulsion = 18319.906897 eV Total energy + Delta-G solvation = -3340.969959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94277 -39.05463 -36.97958 -34.88375 -33.94139 -32.36884 -31.65586 -31.35852 -28.49346 -28.43163 -26.85134 -24.83336 -22.90833 -22.53710 -22.00176 -20.52896 -20.00322 -18.04240 -17.56165 -16.20788 -16.04264 -15.74982 -15.41635 -15.16427 -15.11053 -14.61910 -14.22071 -14.14390 -13.81505 -13.68201 -13.33752 -12.99134 -12.94700 -12.82357 -12.38218 -12.28016 -11.93588 -11.88297 -11.76371 -11.44053 -11.27700 -10.88436 -10.88367 -10.79216 -10.26040 -9.90044 -9.32492 -9.29862 -9.04952 -8.70663 -8.58917 -7.67671 -7.45585 -6.10999 -4.17209 1.31982 1.41445 2.82657 3.27030 3.33183 3.36433 3.47867 3.75251 4.05864 4.36847 4.52706 4.61177 4.83149 4.86195 4.94010 4.95863 5.12483 5.15710 5.19846 5.24989 5.25390 5.28778 5.33615 5.36015 5.49819 5.51648 5.69968 5.89967 5.99157 6.14977 6.18045 6.28557 6.63440 6.69394 6.95624 6.98085 7.20565 7.24861 7.59120 7.62651 7.63638 7.97882 8.11192 8.82762 9.03059 9.40818 9.55394 10.99354 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.048622 B = 0.002025 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.730237 B =13827.197319 C =13908.482244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.642 5.642 3 C 0.095 3.905 4 C 0.209 3.791 5 C -0.198 4.198 6 C -0.064 4.064 7 C -0.134 4.134 8 C -0.083 4.083 9 C 0.147 3.853 10 N -0.759 5.759 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.731 5.731 14 C 0.266 3.734 15 C -0.540 4.540 16 H 0.063 0.937 17 C 0.062 3.938 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.064 4.064 24 C -0.195 4.195 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.390 0.610 38 H 0.386 0.614 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 22.135 17.237 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.354 5.354 3 C -0.048 4.048 4 C 0.108 3.892 5 C -0.220 4.220 6 C -0.083 4.083 7 C -0.137 4.137 8 C -0.121 4.121 9 C 0.022 3.978 10 N -0.417 5.417 11 C 0.391 3.609 12 O -0.481 6.481 13 N -0.383 5.383 14 C 0.145 3.855 15 C -0.579 4.579 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.083 4.083 24 C -0.218 4.218 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.223 0.777 38 H 0.218 0.782 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.323 22.665 16.009 29.970 hybrid contribution 0.736 -1.095 0.790 1.537 sum -10.587 21.570 16.799 29.318 Atomic orbital electron populations 1.21682 0.79686 1.03094 1.00853 1.46274 1.04921 1.03175 1.81066 1.21582 0.97133 0.84947 1.01138 1.17844 0.91318 0.85627 0.94396 1.20684 0.99603 0.91202 1.10524 1.20821 0.93478 0.97305 0.96655 1.19452 0.93663 0.94360 1.06190 1.20670 1.00372 0.94287 0.96756 1.21047 0.96616 0.84627 0.95505 1.45188 1.63120 1.25208 1.08175 1.16163 0.79734 0.81380 0.83582 1.90870 1.58049 1.68552 1.30616 1.45707 1.58421 1.21742 1.12447 1.18971 0.96443 0.90500 0.79589 1.21280 1.36845 1.05872 0.93878 0.91894 1.24957 0.95953 0.98394 0.94830 1.69994 1.45707 1.37766 0.98847 0.86358 0.79486 0.82648 0.78360 1.19683 1.20849 1.20844 1.20823 0.99552 0.91346 0.96545 1.20636 0.92174 0.98574 1.10374 0.90321 0.92805 0.93086 0.93478 0.91736 0.91366 0.85999 0.86003 0.90723 0.90722 0.92037 0.92039 0.77668 0.78215 0.95786 0.95780 0.92559 0.86012 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.62 59.84 0.64 1.17 16 2 N -0.64 -5.20 3.41 -187.55 -0.64 -5.84 16 3 C 0.10 0.56 10.10 59.85 0.60 1.17 16 4 C 0.21 2.07 6.54 -83.79 -0.55 1.53 16 5 C -0.20 -1.93 9.31 -39.38 -0.37 -2.30 16 6 C -0.06 -0.65 9.69 -39.61 -0.38 -1.03 16 7 C -0.13 -1.41 5.14 -104.58 -0.54 -1.95 16 8 C -0.08 -0.83 5.46 -27.88 -0.15 -0.98 16 9 C 0.15 2.04 5.66 -4.04 -0.02 2.02 16 10 N -0.76 -11.84 5.56 -65.23 -0.36 -12.21 16 11 C 0.69 14.98 8.57 -86.92 -0.74 14.23 16 12 O -0.60 -15.83 16.34 5.29 0.09 -15.74 16 13 N -0.73 -16.22 5.55 -66.42 -0.37 -16.59 16 14 C 0.27 7.34 5.43 -5.19 -0.03 7.31 16 15 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 16 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.06 -0.65 9.69 -39.61 -0.38 -1.03 16 24 C -0.20 -1.92 9.16 -39.38 -0.36 -2.28 16 25 H 0.08 0.44 5.31 -51.93 -0.28 0.17 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.28 8.07 -51.93 -0.42 -0.14 16 30 H 0.07 0.38 6.45 -51.93 -0.34 0.04 16 31 H 0.12 0.97 5.74 -52.49 -0.30 0.67 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.39 4.75 8.49 -40.82 -0.35 4.41 16 38 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.12 0.99 6.31 -52.49 -0.33 0.65 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -35.17 358.99 -9.39 -44.56 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.53 Total: 5.95 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.70 Total: 4.17 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.63 Total: -60.50 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.09 Total: -15.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.17 -9.39 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320916845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.103 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds