Wall clock time and date at job start Tue Mar 31 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99837 * 2 1 4 4 C 1.39674 * 120.00419 * 180.02562 * 2 1 3 5 5 C 1.38910 * 120.07187 * 354.28206 * 4 2 1 6 6 C 1.38110 * 119.92746 * 180.02562 * 5 4 2 7 7 C 1.38296 * 120.07041 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.92114 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47001 * 90.00105 * 8 7 6 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00002 * 179.97438 * 10 9 8 12 12 O 1.21584 * 119.99866 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99820 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99703 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46971 * 180.02562 * 14 13 11 16 16 H 1.07993 * 119.99972 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99754 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00422 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99748 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47436 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47138 * 119.99885 * 19 17 15 22 22 H 1.48503 * 109.47166 * 240.00005 * 19 17 15 23 23 C 1.38287 * 120.14762 * 0.27638 * 7 6 5 24 24 C 1.38103 * 120.07568 * 359.44237 * 23 7 6 25 25 H 1.09005 * 109.46774 * 185.05673 * 1 2 3 26 26 H 1.09001 * 109.46948 * 305.04881 * 1 2 3 27 27 H 1.08998 * 109.47374 * 65.05565 * 1 2 3 28 28 H 1.09003 * 109.46962 * 270.00363 * 3 2 1 29 29 H 1.08995 * 109.46551 * 30.00565 * 3 2 1 30 30 H 1.08996 * 109.46696 * 150.00667 * 3 2 1 31 31 H 1.07997 * 120.03942 * 0.04581 * 5 4 2 32 32 H 1.07997 * 119.96780 * 179.97438 * 6 5 4 33 33 H 1.09003 * 109.46551 * 209.99760 * 8 7 6 34 34 H 1.08998 * 109.47565 * 329.99726 * 8 7 6 35 35 H 1.08994 * 109.47326 * 299.99548 * 9 8 7 36 36 H 1.08998 * 109.46919 * 60.00332 * 9 8 7 37 37 H 0.97001 * 120.00011 * 0.02562 * 10 9 8 38 38 H 0.97001 * 120.00193 * 0.02562 * 13 11 10 39 39 H 1.08999 * 109.47464 * 300.00131 * 14 13 11 40 40 H 1.09006 * 109.47268 * 60.00104 * 14 13 11 41 41 H 0.96996 * 119.99837 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.95667 * 179.70387 * 23 7 6 43 43 H 1.07999 * 120.03769 * 180.27949 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1634 -1.2096 -0.0005 5 6 1.4756 -2.4105 0.1187 6 6 2.1693 -3.6048 0.1183 7 6 3.5472 -3.6058 0.0000 8 6 4.3008 -4.9108 0.0006 9 6 4.4325 -5.4243 -1.4347 10 7 5.1656 -6.6927 -1.4341 11 6 5.4024 -7.3346 -2.5953 12 8 5.0081 -6.8608 -3.6433 13 7 6.0764 -8.5017 -2.5948 14 6 6.3334 -9.1997 -3.8569 15 6 7.0975 -10.4693 -3.5822 16 1 7.3653 -10.7299 -2.5690 17 6 7.4556 -11.2976 -4.6247 18 7 7.1299 -10.9800 -5.8587 19 14 8.4034 -12.8709 -4.2843 20 1 8.6443 -12.9978 -2.8245 21 1 7.6146 -14.0364 -4.7584 22 1 9.7042 -12.8297 -4.9994 23 6 4.2355 -2.4116 -0.1126 24 6 3.5475 -1.2142 -0.1188 25 1 -0.3633 -1.0237 0.0906 26 1 -0.3633 0.5902 0.8413 27 1 -0.3634 0.4334 -0.9318 28 1 2.3791 1.5835 -1.0277 29 1 1.6084 2.0283 0.5139 30 1 3.1499 1.1384 0.5137 31 1 0.3996 -2.4105 0.2112 32 1 1.6353 -4.5389 0.2114 33 1 5.2934 -4.7569 0.4239 34 1 3.7595 -5.6427 0.6001 35 1 3.4400 -5.5781 -1.8580 36 1 4.9738 -4.6924 -2.0341 37 1 5.4799 -7.0709 -0.5980 38 1 6.3907 -8.8799 -1.7586 39 1 5.3856 -9.4432 -4.3369 40 1 6.9193 -8.5576 -4.5145 41 1 7.3815 -11.5630 -6.5920 42 1 5.3119 -2.4158 -0.2001 43 1 4.0852 -0.2822 -0.2113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320916845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:17 Heat of formation + Delta-G solvation = -26.872975 kcal Electronic energy + Delta-G solvation = -21661.935406 eV Core-core repulsion = 18319.906897 eV Total energy + Delta-G solvation = -3342.028509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91848 -40.50953 -37.74504 -36.33001 -35.78926 -34.35146 -32.77256 -32.04978 -29.73478 -28.99385 -28.50212 -25.77627 -24.54631 -23.28199 -23.23859 -21.89789 -21.15621 -19.75313 -18.29608 -17.97328 -17.37627 -16.98273 -16.50324 -16.48356 -15.96258 -15.89006 -15.31792 -15.30132 -15.08060 -14.66054 -14.50800 -14.41433 -14.02633 -13.82958 -13.66459 -13.36775 -12.87977 -12.86145 -12.80889 -12.74290 -12.68654 -12.27657 -12.23651 -12.19555 -11.52867 -11.42827 -11.23200 -10.80160 -10.57095 -10.24643 -9.78770 -9.54904 -8.26789 -8.11488 -6.43236 0.58249 0.65477 1.44891 1.46689 1.59973 1.94928 2.27566 2.28256 2.41468 2.96238 3.08145 3.59094 3.89515 4.05149 4.13099 4.20337 4.21483 4.29364 4.49878 4.51916 4.59170 4.64689 4.66947 4.76592 4.87578 4.89190 4.91560 5.06274 5.07111 5.19195 5.22624 5.28866 5.41749 5.51187 5.52432 5.61400 5.71110 5.86947 5.87163 5.99574 6.31915 6.37958 6.58618 6.69164 7.26304 7.36485 7.76154 8.85947 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.048622 B = 0.002025 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.730237 B =13827.197319 C =13908.482244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.648 5.648 3 C 0.090 3.910 4 C 0.200 3.800 5 C -0.210 4.210 6 C -0.072 4.072 7 C -0.152 4.152 8 C -0.066 4.066 9 C 0.148 3.852 10 N -0.731 5.731 11 C 0.689 3.311 12 O -0.653 6.653 13 N -0.723 5.723 14 C 0.284 3.716 15 C -0.554 4.554 16 H 0.085 0.915 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.988 3.012 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.072 4.072 24 C -0.208 4.208 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.413 0.587 38 H 0.406 0.594 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.269 0.731 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 21.932 19.786 31.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.360 5.360 3 C -0.052 4.052 4 C 0.098 3.902 5 C -0.232 4.232 6 C -0.091 4.091 7 C -0.154 4.154 8 C -0.104 4.104 9 C 0.023 3.977 10 N -0.389 5.389 11 C 0.388 3.612 12 O -0.536 6.536 13 N -0.377 5.377 14 C 0.161 3.839 15 C -0.591 4.591 16 H 0.103 0.897 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.811 3.189 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.091 4.091 24 C -0.231 4.231 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.249 0.751 38 H 0.241 0.759 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.077 0.923 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.994 22.502 18.662 31.233 hybrid contribution 0.539 -0.874 -0.005 1.027 sum -10.455 21.628 18.657 30.417 Atomic orbital electron populations 1.21823 0.78636 1.03559 1.01773 1.46550 1.05841 1.03213 1.80390 1.21717 0.97516 0.84545 1.01457 1.18076 0.91656 0.86500 0.93999 1.20918 1.00480 0.91191 1.10655 1.21041 0.93610 0.97987 0.96437 1.19538 0.93978 0.94524 1.07388 1.20546 1.01628 0.94374 0.93838 1.21170 0.95092 0.83166 0.98229 1.44933 1.61813 1.25031 1.07116 1.16370 0.79227 0.81155 0.84433 1.90836 1.59902 1.69714 1.33138 1.45285 1.58859 1.21962 1.11592 1.18414 0.93858 0.90636 0.81025 1.21646 1.36728 1.05696 0.95075 0.89679 1.26103 0.96826 1.02526 0.94347 1.70158 1.47063 1.39576 1.00235 0.85062 0.77483 0.77109 0.79213 1.17565 1.20476 1.20472 1.21034 1.00210 0.91511 0.96341 1.20848 0.92501 0.99077 1.10637 0.90243 0.91263 0.92598 0.93479 0.89914 0.91170 0.84639 0.85002 0.89073 0.89039 0.93561 0.93605 0.75077 0.75898 0.99759 0.99761 0.92262 0.85073 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.62 127.77 1.36 2.24 16 2 N -0.65 -9.69 3.41 -747.28 -2.55 -12.23 16 3 C 0.09 0.94 10.10 127.77 1.29 2.23 16 4 C 0.20 3.79 6.54 38.21 0.25 4.04 16 5 C -0.21 -3.93 9.31 22.40 0.21 -3.72 16 6 C -0.07 -1.39 9.69 22.25 0.22 -1.18 16 7 C -0.15 -3.02 5.14 -19.84 -0.10 -3.12 16 8 C -0.07 -1.20 5.46 29.85 0.16 -1.04 16 9 C 0.15 4.02 5.66 86.38 0.49 4.51 16 10 N -0.73 -21.97 5.56 -478.54 -2.66 -24.63 16 11 C 0.69 30.09 8.57 179.05 1.53 31.62 16 12 O -0.65 -35.64 16.34 -3.98 -0.07 -35.70 16 13 N -0.72 -32.21 5.55 -482.30 -2.68 -34.89 16 14 C 0.28 16.21 5.43 85.63 0.46 16.68 16 15 C -0.55 -30.71 9.28 25.60 0.24 -30.48 16 16 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 17 C 0.00 0.07 5.46 84.65 0.46 0.54 16 18 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 19 Si 0.99 42.80 29.54 68.60 2.03 44.83 16 20 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.07 -1.41 9.69 22.25 0.22 -1.19 16 24 C -0.21 -3.95 9.16 22.40 0.21 -3.74 16 25 H 0.08 0.80 5.31 -2.38 -0.01 0.79 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 30 H 0.07 0.70 6.45 -2.39 -0.02 0.68 16 31 H 0.14 2.02 5.74 -2.91 -0.02 2.01 16 32 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 34 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 8.97 8.49 -92.71 -0.79 8.18 16 38 H 0.41 14.69 8.34 -92.71 -0.77 13.91 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.13 2.05 6.31 -2.91 -0.02 2.03 16 Total: -1.00 -78.48 358.99 0.82 -77.67 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.54 Total: 24.47 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.99 Total: 17.39 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -7.60 Total: -128.65 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.07 Total: -35.70 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -78.48 0.82 -77.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320916845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.793 kcal (2) G-P(sol) polarization free energy of solvation -78.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds