Wall clock time and date at job start Tue Mar 31 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47203 * 2 1 4 4 C 1.36983 * 119.99731 * 263.35516 * 3 2 1 5 5 H 1.07995 * 119.99842 * 190.51415 * 4 3 2 6 6 C 1.38975 * 120.00061 * 10.52107 * 4 3 2 7 7 N 1.31413 * 120.00316 * 21.12436 * 6 4 3 8 8 Si 1.86807 * 119.99802 * 201.12458 * 6 4 3 9 9 H 1.48500 * 109.47216 * 59.99789 * 8 6 4 10 10 H 1.48501 * 109.46824 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47063 * 299.99581 * 8 6 4 12 12 C 1.34773 * 119.99892 * 83.35705 * 3 2 1 13 13 O 1.21620 * 120.00149 * 5.71722 * 12 3 2 14 14 C 1.47354 * 119.99700 * 185.71833 * 12 3 2 15 15 C 1.41326 * 126.42313 * 36.84917 * 14 12 3 16 16 N 1.30449 * 108.02460 * 180.30026 * 15 14 12 17 17 N 1.39932 * 108.91608 * 359.74175 * 16 15 14 18 18 C 1.46495 * 125.75042 * 180.02562 * 17 16 15 19 19 C 1.54266 * 110.03493 * 57.88427 * 18 17 16 20 20 C 1.54958 * 104.16249 * 217.13766 * 19 18 17 21 21 C 1.54890 * 102.77701 * 37.88612 * 20 19 18 22 22 C 1.53880 * 110.03474 * 300.66768 * 18 17 16 23 23 C 1.34291 * 108.49665 * 0.02562 * 17 16 15 24 24 C 1.50693 * 126.29614 * 179.97438 * 23 17 16 25 25 H 1.09007 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46770 * 299.99631 * 1 2 3 27 27 H 1.08997 * 109.47524 * 59.99718 * 1 2 3 28 28 H 1.08999 * 109.46712 * 240.00173 * 2 1 3 29 29 H 1.08997 * 109.47524 * 120.00282 * 2 1 3 30 30 H 0.97002 * 119.99834 * 180.02562 * 7 6 4 31 31 H 1.07997 * 125.98461 * 0.04727 * 15 14 12 32 32 H 1.09002 * 110.01539 * 179.27559 * 18 17 16 33 33 H 1.09002 * 110.48336 * 335.78471 * 19 18 17 34 34 H 1.09004 * 110.48260 * 98.42279 * 19 18 17 35 35 H 1.09001 * 110.71799 * 279.56851 * 20 19 18 36 36 H 1.09003 * 110.76603 * 156.22426 * 20 19 18 37 37 H 1.08998 * 110.48374 * 203.40622 * 21 20 19 38 38 H 1.08998 * 110.59577 * 80.81942 * 21 20 19 39 39 H 1.08997 * 110.03128 * 238.57238 * 22 18 17 40 40 H 1.09001 * 110.03090 * 359.95172 * 22 18 17 41 41 H 1.09003 * 109.47162 * 90.00310 * 24 23 17 42 42 H 1.09004 * 109.47458 * 330.00124 * 24 23 17 43 43 H 1.09000 * 109.47300 * 210.00325 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3760 1.9811 -1.1784 5 1 2.8922 2.9297 -1.1664 6 6 2.0746 1.3692 -2.3892 7 7 1.1190 0.4693 -2.4507 8 14 3.0280 1.8260 -3.9294 9 1 4.4687 1.5290 -3.7261 10 1 2.5170 1.0380 -5.0797 11 1 2.8556 3.2747 -4.2068 12 6 2.1157 2.0615 1.1593 13 8 1.8981 1.4983 2.2151 14 6 2.4856 3.4878 1.1477 15 6 2.0935 4.4486 0.1884 16 7 2.6277 5.5915 0.5200 17 7 3.3714 5.4213 1.6931 18 6 4.1240 6.4680 2.3889 19 6 3.1826 7.6271 2.7763 20 6 4.0441 8.8991 2.5737 21 6 4.8609 8.5606 1.3019 22 6 5.1910 7.0613 1.4522 23 6 3.2788 4.1367 2.0736 24 6 3.9263 3.5162 3.2845 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.9089 0.0420 -3.2958 31 1 1.4653 4.2674 -0.6712 32 1 4.5970 6.0571 3.2808 33 1 2.3125 7.6473 2.1201 34 1 2.8742 7.5361 3.8178 35 1 4.7045 9.0574 3.4262 36 1 3.4121 9.7712 2.4062 37 1 5.7764 9.1512 1.2681 38 1 4.2641 8.7320 0.4060 39 1 6.1817 6.9390 1.8899 40 1 5.1494 6.5698 0.4801 41 1 3.2511 3.5923 4.1368 42 1 4.8552 4.0407 3.5088 43 1 4.1412 2.4665 3.0839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323170372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:14 Heat of formation + Delta-G solvation = 42.922610 kcal Electronic energy + Delta-G solvation = -24141.897371 eV Core-core repulsion = 20802.895426 eV Total energy + Delta-G solvation = -3339.001945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87846 -38.34016 -37.53021 -34.89228 -32.50091 -31.41976 -31.19323 -29.68534 -28.87381 -27.20639 -26.61298 -24.75050 -22.57835 -21.75780 -20.83961 -20.47084 -18.81667 -18.80150 -17.06258 -16.44494 -15.92486 -15.26376 -14.88163 -14.39478 -14.23354 -14.16209 -13.65889 -13.48002 -13.13808 -12.78108 -12.56799 -12.43415 -12.26779 -11.93406 -11.81292 -11.57067 -11.41687 -11.28633 -11.25545 -11.15633 -11.02887 -10.93022 -10.71401 -10.66974 -10.39764 -10.21142 -10.07868 -9.64647 -8.84525 -8.67376 -8.37155 -7.75549 -7.62684 -6.31077 -3.77985 2.27209 2.84749 3.08998 3.23397 3.23929 3.27473 4.12995 4.30949 4.37932 4.43610 4.69332 4.92830 5.04106 5.15073 5.16896 5.23070 5.30991 5.33440 5.44776 5.48621 5.66990 5.72743 5.82246 5.87296 5.88803 6.03050 6.07923 6.20222 6.30223 6.34948 6.41492 6.57443 6.74882 6.87377 6.93796 7.10747 7.28836 7.42024 7.51955 7.53509 7.81985 7.87247 8.30020 8.54085 9.14962 9.65915 10.06213 10.66874 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.005109 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.645416 B = 5479.119962 C = 6524.786163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.135 3.865 3 N -0.432 5.432 4 C -0.327 4.327 5 H 0.103 0.897 6 C 0.034 3.966 7 N -0.859 5.859 8 Si 0.913 3.087 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.614 6.614 14 C -0.236 4.236 15 C 0.093 3.907 16 N -0.314 5.314 17 N -0.367 5.367 18 C 0.159 3.841 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.132 4.132 23 C 0.109 3.891 24 C -0.081 4.081 25 H 0.032 0.968 26 H 0.025 0.975 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.035 0.965 30 H 0.267 0.733 31 H 0.193 0.807 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 11.508 6.543 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 N -0.149 5.149 4 C -0.455 4.455 5 H 0.121 0.879 6 C -0.170 4.170 7 N -0.498 5.498 8 Si 0.740 3.260 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.502 6.502 14 C -0.250 4.250 15 C -0.093 4.093 16 N -0.134 5.134 17 N -0.149 5.149 18 C 0.056 3.944 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.170 4.170 23 C -0.021 4.021 24 C -0.139 4.139 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.210 0.790 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.476 12.391 6.610 15.465 hybrid contribution 0.284 -0.704 -0.839 1.132 sum 6.760 11.686 5.770 14.682 Atomic orbital electron populations 1.21989 0.96915 0.99386 1.01587 1.21203 0.94276 0.83036 1.00252 1.43634 1.54673 1.11192 1.05397 1.19815 1.35511 1.07436 0.82762 0.87925 1.25176 0.95757 0.97085 0.98977 1.70117 1.25578 1.27493 1.26613 0.86206 0.80180 0.78722 0.80894 1.20118 1.20947 1.19826 1.17033 0.83136 0.84602 0.83923 1.90580 1.58270 1.70209 1.31153 1.20179 1.09571 0.96421 0.98875 1.24258 0.97694 0.88881 0.98516 1.77001 1.13111 1.23483 0.99769 1.48350 1.39769 1.06375 1.20420 1.21902 0.91424 0.86980 0.94073 1.22752 0.99010 0.93309 1.01916 1.22468 0.98218 0.97291 0.97920 1.22305 0.99888 0.95048 0.98500 1.22493 0.97445 0.96417 1.00693 1.21290 0.98715 0.84701 0.97346 1.20362 0.98570 1.01756 0.93253 0.94882 0.95595 0.89529 0.88553 0.94657 0.92197 0.79001 0.88238 0.89683 0.91160 0.91385 0.91172 0.91603 0.91040 0.91059 0.90174 0.90335 0.92278 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.68 37.16 0.36 -2.96 16 2 C 0.14 3.37 5.28 -4.04 -0.02 3.35 16 3 N -0.43 -11.12 2.64 -116.05 -0.31 -11.43 16 4 C -0.33 -8.26 8.19 -14.98 -0.12 -8.39 16 5 H 0.10 2.54 5.25 -52.49 -0.28 2.27 16 6 C 0.03 0.84 4.98 -17.46 -0.09 0.75 16 7 N -0.86 -21.56 8.44 55.50 0.47 -21.10 16 8 Si 0.91 19.52 29.60 -169.99 -5.03 14.49 16 9 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 C 0.52 13.31 7.25 -12.55 -0.09 13.22 16 13 O -0.61 -16.62 15.86 5.26 0.08 -16.54 16 14 C -0.24 -5.28 5.35 -105.06 -0.56 -5.84 16 15 C 0.09 1.96 9.67 -16.97 -0.16 1.80 16 16 N -0.31 -6.05 11.92 30.87 0.37 -5.68 16 17 N -0.37 -6.26 3.18 -49.07 -0.16 -6.41 16 18 C 0.16 1.99 3.66 -66.81 -0.24 1.75 16 19 C -0.13 -1.48 6.52 -25.03 -0.16 -1.64 16 20 C -0.12 -1.07 6.91 -24.70 -0.17 -1.24 16 21 C -0.12 -1.17 6.83 -25.08 -0.17 -1.34 16 22 C -0.13 -1.51 6.54 -25.61 -0.17 -1.68 16 23 C 0.11 2.06 7.00 -81.57 -0.57 1.49 16 24 C -0.08 -1.26 9.37 36.00 0.34 -0.93 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.09 2.18 6.33 -51.93 -0.33 1.85 16 28 H 0.10 2.46 5.83 -51.93 -0.30 2.16 16 29 H 0.04 0.87 7.55 -51.93 -0.39 0.48 16 30 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 31 H 0.19 4.04 7.13 -52.49 -0.37 3.66 16 32 H 0.10 1.06 6.69 -51.93 -0.35 0.71 16 33 H 0.08 1.16 7.70 -51.93 -0.40 0.76 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.71 7.10 -51.93 -0.37 0.34 16 43 H 0.09 1.57 7.60 -51.93 -0.39 1.18 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -29.34 340.79 -7.81 -37.15 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.53 Total: 6.04 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.84 Total: -1.66 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.37 Total: -44.62 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.08 Total: -16.54 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.34 -7.81 -37.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323170372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.071 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds