Wall clock time and date at job start Tue Mar 31 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47203 * 2 1 4 4 C 1.36983 * 119.99731 * 263.35516 * 3 2 1 5 5 H 1.07995 * 119.99842 * 190.51415 * 4 3 2 6 6 C 1.38975 * 120.00061 * 10.52107 * 4 3 2 7 7 N 1.31413 * 120.00316 * 21.12436 * 6 4 3 8 8 Si 1.86807 * 119.99802 * 201.12458 * 6 4 3 9 9 H 1.48500 * 109.47216 * 59.99789 * 8 6 4 10 10 H 1.48501 * 109.46824 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47063 * 299.99581 * 8 6 4 12 12 C 1.34773 * 119.99892 * 83.35705 * 3 2 1 13 13 O 1.21620 * 120.00149 * 5.71722 * 12 3 2 14 14 C 1.47354 * 119.99700 * 185.71833 * 12 3 2 15 15 C 1.41326 * 126.42313 * 36.84917 * 14 12 3 16 16 N 1.30449 * 108.02460 * 180.30026 * 15 14 12 17 17 N 1.39932 * 108.91608 * 359.74175 * 16 15 14 18 18 C 1.46495 * 125.75042 * 180.02562 * 17 16 15 19 19 C 1.54266 * 110.03493 * 57.88427 * 18 17 16 20 20 C 1.54958 * 104.16249 * 217.13766 * 19 18 17 21 21 C 1.54890 * 102.77701 * 37.88612 * 20 19 18 22 22 C 1.53880 * 110.03474 * 300.66768 * 18 17 16 23 23 C 1.34291 * 108.49665 * 0.02562 * 17 16 15 24 24 C 1.50693 * 126.29614 * 179.97438 * 23 17 16 25 25 H 1.09007 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46770 * 299.99631 * 1 2 3 27 27 H 1.08997 * 109.47524 * 59.99718 * 1 2 3 28 28 H 1.08999 * 109.46712 * 240.00173 * 2 1 3 29 29 H 1.08997 * 109.47524 * 120.00282 * 2 1 3 30 30 H 0.97002 * 119.99834 * 180.02562 * 7 6 4 31 31 H 1.07997 * 125.98461 * 0.04727 * 15 14 12 32 32 H 1.09002 * 110.01539 * 179.27559 * 18 17 16 33 33 H 1.09002 * 110.48336 * 335.78471 * 19 18 17 34 34 H 1.09004 * 110.48260 * 98.42279 * 19 18 17 35 35 H 1.09001 * 110.71799 * 279.56851 * 20 19 18 36 36 H 1.09003 * 110.76603 * 156.22426 * 20 19 18 37 37 H 1.08998 * 110.48374 * 203.40622 * 21 20 19 38 38 H 1.08998 * 110.59577 * 80.81942 * 21 20 19 39 39 H 1.08997 * 110.03128 * 238.57238 * 22 18 17 40 40 H 1.09001 * 110.03090 * 359.95172 * 22 18 17 41 41 H 1.09003 * 109.47162 * 90.00310 * 24 23 17 42 42 H 1.09004 * 109.47458 * 330.00124 * 24 23 17 43 43 H 1.09000 * 109.47300 * 210.00325 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3760 1.9811 -1.1784 5 1 2.8922 2.9297 -1.1664 6 6 2.0746 1.3692 -2.3892 7 7 1.1190 0.4693 -2.4507 8 14 3.0280 1.8260 -3.9294 9 1 4.4687 1.5290 -3.7261 10 1 2.5170 1.0380 -5.0797 11 1 2.8556 3.2747 -4.2068 12 6 2.1157 2.0615 1.1593 13 8 1.8981 1.4983 2.2151 14 6 2.4856 3.4878 1.1477 15 6 2.0935 4.4486 0.1884 16 7 2.6277 5.5915 0.5200 17 7 3.3714 5.4213 1.6931 18 6 4.1240 6.4680 2.3889 19 6 3.1826 7.6271 2.7763 20 6 4.0441 8.8991 2.5737 21 6 4.8609 8.5606 1.3019 22 6 5.1910 7.0613 1.4522 23 6 3.2788 4.1367 2.0736 24 6 3.9263 3.5162 3.2845 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.9089 0.0420 -3.2958 31 1 1.4653 4.2674 -0.6712 32 1 4.5970 6.0571 3.2808 33 1 2.3125 7.6473 2.1201 34 1 2.8742 7.5361 3.8178 35 1 4.7045 9.0574 3.4262 36 1 3.4121 9.7712 2.4062 37 1 5.7764 9.1512 1.2681 38 1 4.2641 8.7320 0.4060 39 1 6.1817 6.9390 1.8899 40 1 5.1494 6.5698 0.4801 41 1 3.2511 3.5923 4.1368 42 1 4.8552 4.0407 3.5088 43 1 4.1412 2.4665 3.0839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323170372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:13 Heat of formation + Delta-G solvation = 27.254170 kcal Electronic energy + Delta-G solvation = -24142.576806 eV Core-core repulsion = 20802.895426 eV Total energy + Delta-G solvation = -3339.681380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36139 -40.07781 -38.66224 -36.85918 -33.88594 -33.35527 -32.68757 -31.43373 -29.71800 -28.45185 -28.01184 -26.68760 -24.38062 -23.11099 -22.16103 -21.60258 -20.64974 -20.05337 -18.76384 -17.93215 -17.40608 -16.45052 -16.31034 -16.03155 -15.88723 -15.59388 -15.43700 -14.64246 -14.53895 -14.33216 -14.21122 -13.94881 -13.70713 -13.57802 -13.11380 -13.02311 -12.86097 -12.78260 -12.63624 -12.51518 -12.15566 -12.10143 -12.07218 -12.01479 -11.92789 -11.62474 -11.51999 -11.48502 -10.80118 -10.31928 -10.10755 -9.67542 -9.27650 -8.21913 -5.74896 0.76163 1.36877 1.48463 1.53653 1.54564 1.57415 2.33022 2.49853 3.09138 3.25444 3.45661 3.56668 3.71118 3.83502 4.02850 4.17875 4.28161 4.43705 4.46775 4.47834 4.56052 4.66511 4.72911 4.73394 4.81833 4.86916 4.88882 4.95788 4.98396 5.01460 5.10538 5.17296 5.19462 5.24029 5.28025 5.44391 5.45846 5.50478 5.68281 5.85683 5.90301 6.18379 6.58575 6.75797 7.20366 7.70974 8.11325 8.76541 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.005109 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.645416 B = 5479.119962 C = 6524.786163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.136 3.864 3 N -0.444 5.444 4 C -0.344 4.344 5 H 0.103 0.897 6 C 0.001 3.999 7 N -0.877 5.877 8 Si 0.976 3.024 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.270 1.270 12 C 0.516 3.484 13 O -0.641 6.641 14 C -0.282 4.282 15 C 0.083 3.917 16 N -0.317 5.317 17 N -0.351 5.351 18 C 0.142 3.858 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.130 4.130 23 C 0.121 3.879 24 C -0.078 4.078 25 H 0.056 0.944 26 H 0.012 0.988 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.271 0.729 31 H 0.182 0.818 32 H 0.131 0.869 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 13.419 7.483 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.013 3.987 3 N -0.160 5.160 4 C -0.472 4.472 5 H 0.120 0.880 6 C -0.202 4.202 7 N -0.515 5.515 8 Si 0.801 3.199 9 H -0.202 1.202 10 H -0.204 1.204 11 H -0.195 1.195 12 C 0.307 3.693 13 O -0.532 6.532 14 C -0.296 4.296 15 C -0.103 4.103 16 N -0.137 5.137 17 N -0.132 5.132 18 C 0.042 3.958 19 C -0.170 4.170 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.169 4.169 23 C -0.011 4.011 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.199 0.801 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.358 14.334 7.538 18.225 hybrid contribution -0.280 -1.236 -1.064 1.654 sum 8.079 13.098 6.474 16.696 Atomic orbital electron populations 1.21818 0.96039 1.00463 1.00003 1.21170 0.94954 0.83112 0.99454 1.43826 1.54869 1.11402 1.05885 1.19972 1.36252 1.07946 0.83013 0.87971 1.25873 0.96109 0.97023 1.01160 1.70190 1.26016 1.27954 1.27389 0.85242 0.78554 0.78485 0.77605 1.20237 1.20369 1.19522 1.17493 0.82633 0.85814 0.83406 1.90526 1.59538 1.71223 1.31869 1.20104 1.12797 0.95264 1.01417 1.24053 0.98400 0.89331 0.98512 1.76942 1.13277 1.22632 1.00896 1.48746 1.38404 1.06756 1.19283 1.22559 0.91785 0.86502 0.94997 1.22753 0.98070 0.94056 1.02091 1.22462 0.98025 0.96095 0.98231 1.22309 1.00809 0.94238 0.98270 1.22508 0.98427 0.97043 0.98874 1.21722 0.97099 0.85109 0.97186 1.20458 1.00562 1.00706 0.91891 0.92494 0.96879 0.91088 0.89276 0.95224 0.91924 0.80122 0.85167 0.92697 0.89536 0.88735 0.90499 0.89307 0.93051 0.88282 0.93376 0.89124 0.87871 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 9.68 71.98 0.70 -5.34 16 2 C 0.14 6.97 5.28 86.38 0.46 7.43 16 3 N -0.44 -23.60 2.64 -639.34 -1.69 -25.29 16 4 C -0.34 -17.86 8.19 84.07 0.69 -17.17 16 5 H 0.10 5.23 5.25 -2.91 -0.02 5.22 16 6 C 0.00 0.04 4.98 84.93 0.42 0.46 16 7 N -0.88 -44.50 8.44 21.67 0.18 -44.31 16 8 Si 0.98 40.25 29.60 68.60 2.03 42.28 16 9 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 10 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 C 0.52 27.12 7.25 86.64 0.63 27.74 16 13 O -0.64 -35.79 15.86 -4.09 -0.06 -35.85 16 14 C -0.28 -12.89 5.35 -20.15 -0.11 -12.99 16 15 C 0.08 3.62 9.67 85.66 0.83 4.45 16 16 N -0.32 -12.34 11.92 -56.25 -0.67 -13.01 16 17 N -0.35 -11.54 3.18 -309.15 -0.98 -12.52 16 18 C 0.14 3.14 3.66 45.72 0.17 3.31 16 19 C -0.13 -2.60 6.52 31.69 0.21 -2.40 16 20 C -0.11 -1.55 6.91 31.91 0.22 -1.33 16 21 C -0.12 -1.98 6.83 31.67 0.22 -1.76 16 22 C -0.13 -2.62 6.54 31.32 0.20 -2.41 16 23 C 0.12 4.50 7.00 42.15 0.30 4.79 16 24 C -0.08 -2.28 9.37 71.23 0.67 -1.61 16 25 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 3.65 6.33 -2.39 -0.02 3.64 16 28 H 0.09 4.67 5.83 -2.39 -0.01 4.65 16 29 H 0.03 1.52 7.55 -2.39 -0.02 1.50 16 30 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 31 H 0.18 8.07 7.13 -2.91 -0.02 8.05 16 32 H 0.13 2.13 6.69 -2.39 -0.02 2.11 16 33 H 0.05 1.44 7.70 -2.39 -0.02 1.42 16 34 H 0.09 1.43 8.14 -2.38 -0.02 1.42 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.30 7.83 -2.39 -0.02 1.28 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 42 H 0.10 2.06 7.10 -2.38 -0.02 2.04 16 43 H 0.07 2.35 7.60 -2.39 -0.02 2.33 16 Total: -1.00 -65.63 340.79 5.40 -60.22 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.00 Total: 25.31 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.59 Total: 3.17 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -3.16 Total: -95.13 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.06 Total: -35.85 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -65.63 5.40 -60.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323170372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.476 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds