Wall clock time and date at job start Tue Mar 31 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34955 * 126.03590 * 2 1 4 4 C 1.35316 * 107.74205 * 180.14740 * 3 2 1 5 5 C 1.50704 * 126.03583 * 179.87212 * 4 3 2 6 6 C 1.52997 * 109.47058 * 269.71445 * 5 4 3 7 7 C 1.50700 * 109.47382 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63302 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.67613 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.50709 * 109.45964 * 181.37529 * 12 11 10 14 14 H 1.07997 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99864 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47214 * 59.99967 * 17 15 13 19 19 H 1.48507 * 109.47144 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47052 * 299.99999 * 17 15 13 21 21 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 22 22 C 1.47207 * 120.81153 * 0.14103 * 9 7 6 23 23 C 1.39869 * 107.92212 * 359.60876 * 4 3 2 24 24 N 1.30836 * 108.20142 * 0.24131 * 23 4 3 25 25 H 1.08997 * 109.47075 * 270.31191 * 1 2 3 26 26 H 1.09001 * 109.46951 * 30.31149 * 1 2 3 27 27 H 1.08995 * 109.46938 * 150.31431 * 1 2 3 28 28 H 1.07998 * 126.12764 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47193 * 149.71161 * 5 4 3 30 30 H 1.09004 * 109.47012 * 29.70879 * 5 4 3 31 31 H 1.08998 * 109.47350 * 59.99812 * 6 5 4 32 32 H 1.09003 * 109.47457 * 299.99824 * 6 5 4 33 33 H 1.09002 * 109.58861 * 113.81616 * 10 9 7 34 34 H 1.08996 * 109.58519 * 353.53507 * 10 9 7 35 35 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 36 36 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 37 37 H 1.09004 * 109.45942 * 301.34050 * 12 11 10 38 38 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.49557 * 58.58503 * 21 12 11 40 40 H 1.08996 * 109.50003 * 178.68400 * 21 12 11 41 41 H 1.08996 * 109.53610 * 6.53712 * 22 9 7 42 42 H 1.09002 * 109.68003 * 246.23180 * 22 9 7 43 43 H 1.08000 * 125.89741 * 180.22503 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0073 6 6 5.1825 1.8360 -1.4510 7 6 6.4064 2.7153 -1.4551 8 8 6.8989 3.0738 -0.4063 9 7 6.9542 3.1025 -2.6240 10 6 8.1477 3.9592 -2.6440 11 6 7.8622 5.1872 -3.5142 12 6 7.3973 4.7296 -4.8985 13 6 7.1479 5.9349 -5.7682 14 1 7.3047 6.9276 -5.3730 15 6 6.7194 5.7701 -7.0682 16 7 6.5288 4.5611 -7.5496 17 14 6.4095 7.2640 -8.1460 18 1 7.6639 8.0477 -8.2783 19 1 5.9584 6.8202 -9.4895 20 1 5.3592 8.1117 -7.5268 21 6 6.1042 3.9224 -4.7633 22 6 6.3700 2.6796 -3.9072 23 6 3.5347 -0.7321 0.0037 24 7 2.2891 -1.1327 0.0057 25 1 -0.3633 0.0056 1.0276 26 1 -0.3633 0.8872 -0.5187 27 1 -0.3633 -0.8928 -0.5089 28 1 1.9281 2.1194 -0.0004 29 1 5.5821 1.0367 0.5091 30 1 4.5441 2.4827 0.5021 31 1 4.3684 2.3447 -1.9674 32 1 5.4064 0.8988 -1.9605 33 1 8.9889 3.4043 -3.0597 34 1 8.3859 4.2777 -1.6292 35 1 7.0817 5.7893 -3.0489 36 1 8.7702 5.7820 -3.6130 37 1 8.1681 4.1072 -5.3531 38 1 6.2277 4.4451 -8.4644 39 1 5.3403 4.5364 -4.2863 40 1 5.7611 3.6167 -5.7516 41 1 5.4327 2.1537 -3.7254 42 1 7.0644 2.0194 -4.4269 43 1 4.4054 -1.3710 0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323657338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:08 Heat of formation + Delta-G solvation = 26.903238 kcal Electronic energy + Delta-G solvation = -22946.028780 eV Core-core repulsion = 19606.332183 eV Total energy + Delta-G solvation = -3339.696598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31685 -39.60336 -36.84192 -34.37822 -33.48575 -32.69885 -31.27458 -30.14625 -29.36725 -27.15911 -26.08598 -24.10631 -22.70490 -22.07888 -21.22362 -20.26750 -19.63398 -18.17054 -17.18300 -16.60563 -16.05377 -15.66329 -15.33459 -15.24512 -14.57412 -14.53787 -13.82421 -13.55836 -13.20353 -13.15156 -13.01980 -12.91537 -12.66492 -12.56332 -12.30577 -12.07614 -11.80791 -11.47053 -11.27902 -11.06806 -10.93663 -10.67066 -10.55881 -10.37827 -10.10774 -9.66303 -9.55775 -9.35980 -9.16859 -8.92346 -8.45115 -8.38764 -7.96618 -6.04306 -4.10485 1.74741 2.37191 2.67007 3.06333 3.28575 3.33382 3.36434 3.57390 4.33333 4.39646 4.70785 4.85609 4.86850 4.97890 5.11225 5.19643 5.24516 5.28853 5.43563 5.59707 5.61138 5.77735 5.81013 5.86179 5.98668 6.11129 6.18110 6.23288 6.28296 6.31230 6.47360 6.54856 6.67114 6.85755 6.90965 7.04446 7.15642 7.27916 7.55758 7.65458 7.91208 7.98131 8.03402 8.39205 8.63062 8.92763 9.54585 11.01103 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.003262 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.054692 B = 8581.923249 C = 9548.406915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.056 3.944 4 C -0.231 4.231 5 C -0.023 4.023 6 C -0.132 4.132 7 C 0.510 3.490 8 O -0.562 6.562 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.123 4.123 12 C 0.049 3.951 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.124 4.124 22 C 0.103 3.897 23 C 0.053 3.947 24 N -0.302 5.302 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.173 0.827 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.038 0.962 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -8.757 12.225 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.090 4.090 4 C -0.243 4.243 5 C -0.062 4.062 6 C -0.172 4.172 7 C 0.298 3.702 8 O -0.442 6.442 9 N -0.334 5.334 10 C -0.011 4.011 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.162 4.162 22 C -0.019 4.019 23 C -0.133 4.133 24 N -0.123 5.123 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.191 0.809 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.906 -9.670 12.584 18.708 hybrid contribution 0.202 1.539 -0.904 1.796 sum -9.704 -8.131 11.680 17.225 Atomic orbital electron populations 1.21831 0.74371 1.04504 1.03185 1.48444 1.06559 1.03924 1.57334 1.22388 0.90936 0.93366 1.02298 1.20170 0.94576 0.94013 1.15527 1.19588 0.93307 0.98244 0.95028 1.21677 0.96361 1.00077 0.99101 1.20652 0.85284 0.80914 0.83317 1.90629 1.64188 1.58063 1.31345 1.48338 1.29329 1.49517 1.06244 1.21665 0.86330 0.92170 1.00972 1.22000 1.00691 0.95443 0.97982 1.18628 0.93192 0.95282 0.89875 1.21178 1.44767 0.92661 0.96451 0.92778 1.24955 0.95414 0.95725 0.97856 1.69825 1.46909 1.20579 1.15795 0.86678 0.78656 0.83193 0.79591 1.20308 1.21313 1.20359 1.22021 1.00319 0.93854 1.00038 1.22089 0.97240 0.99097 0.83452 1.23834 0.95114 0.94702 0.99643 1.77327 1.01795 1.08372 1.24816 0.90937 0.89450 0.89388 0.80941 0.90535 0.90808 0.89170 0.89197 0.92373 0.90423 0.93029 0.92228 0.95481 0.92930 0.94301 0.87815 0.91400 0.91975 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.47 59.85 0.69 1.31 16 2 N -0.38 -3.96 4.01 -68.16 -0.27 -4.23 16 3 C 0.06 0.56 11.40 -17.22 -0.20 0.37 16 4 C -0.23 -2.60 5.35 -105.05 -0.56 -3.16 16 5 C -0.02 -0.27 4.99 -27.88 -0.14 -0.41 16 6 C -0.13 -1.70 4.04 -27.88 -0.11 -1.81 16 7 C 0.51 8.59 7.70 -10.99 -0.08 8.51 16 8 O -0.56 -10.97 15.39 5.55 0.09 -10.88 16 9 N -0.60 -10.67 2.98 -172.52 -0.51 -11.18 16 10 C 0.11 2.03 6.42 -3.71 -0.02 2.01 16 11 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 12 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 13 C -0.51 -13.55 8.56 -34.44 -0.29 -13.84 16 14 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.23 11.31 55.43 0.63 -23.60 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.12 -2.68 5.16 -26.59 -0.14 -2.82 16 22 C 0.10 1.81 6.35 -3.54 -0.02 1.78 16 23 C 0.05 0.61 11.96 -17.37 -0.21 0.40 16 24 N -0.30 -3.78 12.58 30.62 0.39 -3.39 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.09 1.12 7.70 -51.93 -0.40 0.72 16 32 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 41 H 0.07 1.01 5.97 -51.93 -0.31 0.70 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -31.48 349.51 -7.80 -39.28 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.83 Total: 0.90 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.52 Total: -7.82 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.22 Total: -42.41 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.48 -7.80 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323657338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.180 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds