Wall clock time and date at job start Tue Mar 31 2020 07:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34955 * 126.03590 * 2 1 4 4 C 1.35316 * 107.74205 * 180.14740 * 3 2 1 5 5 C 1.50704 * 126.03583 * 179.87212 * 4 3 2 6 6 C 1.52997 * 109.47058 * 269.71445 * 5 4 3 7 7 C 1.50700 * 109.47382 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63302 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.67613 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.50709 * 109.45964 * 181.37529 * 12 11 10 14 14 H 1.07997 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99864 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47214 * 59.99967 * 17 15 13 19 19 H 1.48507 * 109.47144 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47052 * 299.99999 * 17 15 13 21 21 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 22 22 C 1.47207 * 120.81153 * 0.14103 * 9 7 6 23 23 C 1.39869 * 107.92212 * 359.60876 * 4 3 2 24 24 N 1.30836 * 108.20142 * 0.24131 * 23 4 3 25 25 H 1.08997 * 109.47075 * 270.31191 * 1 2 3 26 26 H 1.09001 * 109.46951 * 30.31149 * 1 2 3 27 27 H 1.08995 * 109.46938 * 150.31431 * 1 2 3 28 28 H 1.07998 * 126.12764 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47193 * 149.71161 * 5 4 3 30 30 H 1.09004 * 109.47012 * 29.70879 * 5 4 3 31 31 H 1.08998 * 109.47350 * 59.99812 * 6 5 4 32 32 H 1.09003 * 109.47457 * 299.99824 * 6 5 4 33 33 H 1.09002 * 109.58861 * 113.81616 * 10 9 7 34 34 H 1.08996 * 109.58519 * 353.53507 * 10 9 7 35 35 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 36 36 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 37 37 H 1.09004 * 109.45942 * 301.34050 * 12 11 10 38 38 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.49557 * 58.58503 * 21 12 11 40 40 H 1.08996 * 109.50003 * 178.68400 * 21 12 11 41 41 H 1.08996 * 109.53610 * 6.53712 * 22 9 7 42 42 H 1.09002 * 109.68003 * 246.23180 * 22 9 7 43 43 H 1.08000 * 125.89741 * 180.22503 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5454 -0.0073 6 6 5.1825 1.8360 -1.4510 7 6 6.4064 2.7153 -1.4551 8 8 6.8989 3.0738 -0.4063 9 7 6.9542 3.1025 -2.6240 10 6 8.1477 3.9592 -2.6440 11 6 7.8622 5.1872 -3.5142 12 6 7.3973 4.7296 -4.8985 13 6 7.1479 5.9349 -5.7682 14 1 7.3047 6.9276 -5.3730 15 6 6.7194 5.7701 -7.0682 16 7 6.5288 4.5611 -7.5496 17 14 6.4095 7.2640 -8.1460 18 1 7.6639 8.0477 -8.2783 19 1 5.9584 6.8202 -9.4895 20 1 5.3592 8.1117 -7.5268 21 6 6.1042 3.9224 -4.7633 22 6 6.3700 2.6796 -3.9072 23 6 3.5347 -0.7321 0.0037 24 7 2.2891 -1.1327 0.0057 25 1 -0.3633 0.0056 1.0276 26 1 -0.3633 0.8872 -0.5187 27 1 -0.3633 -0.8928 -0.5089 28 1 1.9281 2.1194 -0.0004 29 1 5.5821 1.0367 0.5091 30 1 4.5441 2.4827 0.5021 31 1 4.3684 2.3447 -1.9674 32 1 5.4064 0.8988 -1.9605 33 1 8.9889 3.4043 -3.0597 34 1 8.3859 4.2777 -1.6292 35 1 7.0817 5.7893 -3.0489 36 1 8.7702 5.7820 -3.6130 37 1 8.1681 4.1072 -5.3531 38 1 6.2277 4.4451 -8.4644 39 1 5.3403 4.5364 -4.2863 40 1 5.7611 3.6167 -5.7516 41 1 5.4327 2.1537 -3.7254 42 1 7.0644 2.0194 -4.4269 43 1 4.4054 -1.3710 0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323657338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:07 Heat of formation + Delta-G solvation = 9.150049 kcal Electronic energy + Delta-G solvation = -22946.798616 eV Core-core repulsion = 19606.332183 eV Total energy + Delta-G solvation = -3340.466434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09772 -41.00279 -38.41203 -35.28585 -35.26589 -33.58122 -32.91725 -31.70875 -30.31666 -28.25298 -27.48376 -25.33171 -24.26815 -23.57779 -21.96827 -21.45015 -20.87244 -19.62763 -18.58605 -18.00249 -17.35357 -16.77892 -16.57200 -16.45597 -16.19820 -15.31558 -15.00201 -14.91631 -14.78357 -14.46814 -14.24269 -13.97121 -13.81699 -13.57232 -13.40798 -13.32279 -13.06779 -12.91766 -12.77780 -12.65803 -12.46553 -12.12898 -11.98769 -11.90308 -11.45041 -11.40623 -10.98370 -10.93421 -10.60818 -10.36784 -10.32703 -9.48343 -9.25683 -8.06280 -6.19492 0.98811 1.43699 1.44336 1.51613 1.73360 1.73984 1.83164 2.23555 2.45325 3.20134 3.60101 3.78699 4.04232 4.12744 4.26607 4.30051 4.33034 4.39053 4.42131 4.46676 4.52267 4.59331 4.66405 4.71530 4.73163 4.79669 4.85710 4.91837 4.97690 5.02584 5.21761 5.28225 5.32207 5.39706 5.46516 5.59576 5.67985 5.75666 6.01173 6.16481 6.18357 6.41250 6.60340 6.77563 6.89854 7.27516 7.48086 8.96766 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019068 B = 0.003262 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.054692 B = 8581.923249 C = 9548.406915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.060 3.940 4 C -0.248 4.248 5 C -0.011 4.011 6 C -0.123 4.123 7 C 0.509 3.491 8 O -0.589 6.589 9 N -0.607 5.607 10 C 0.116 3.884 11 C -0.113 4.113 12 C 0.045 3.955 13 C -0.536 4.536 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.911 5.911 17 Si 0.948 3.052 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.115 4.115 22 C 0.115 3.885 23 C 0.045 3.955 24 N -0.337 5.337 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.200 0.800 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.002 0.998 38 H 0.261 0.739 39 H 0.029 0.971 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.387 -8.925 12.601 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.087 4.087 4 C -0.259 4.259 5 C -0.050 4.050 6 C -0.163 4.163 7 C 0.299 3.701 8 O -0.471 6.471 9 N -0.339 5.339 10 C -0.007 4.007 11 C -0.151 4.151 12 C 0.027 3.973 13 C -0.574 4.574 14 H 0.064 0.936 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.154 4.154 22 C -0.007 4.007 23 C -0.140 4.140 24 N -0.159 5.159 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.217 0.783 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.168 -9.852 12.967 19.747 hybrid contribution 0.568 1.621 -1.003 1.989 sum -10.600 -8.231 11.964 17.979 Atomic orbital electron populations 1.22163 0.72235 1.05801 1.04488 1.48801 1.07883 1.03452 1.56414 1.22843 0.90696 0.94452 1.00700 1.20133 0.94764 0.93847 1.17179 1.19416 0.93485 0.97974 0.94115 1.21702 0.94491 0.99882 1.00240 1.21330 0.85799 0.80606 0.82344 1.90619 1.65167 1.59138 1.32185 1.48399 1.29215 1.49609 1.06698 1.21537 0.87161 0.91533 1.00449 1.21844 1.00304 0.96383 0.96592 1.18605 0.93492 0.94340 0.90890 1.21525 1.45085 0.93334 0.97449 0.93551 1.25619 0.95300 0.98152 0.98992 1.69939 1.47184 1.21951 1.15978 0.85776 0.78486 0.80267 0.78073 1.20106 1.20837 1.19977 1.21789 0.98787 0.95259 0.99543 1.21947 0.98924 0.97101 0.82712 1.24153 0.95423 0.95192 0.99206 1.77275 1.02500 1.09891 1.26197 0.89633 0.87020 0.89275 0.78311 0.91211 0.91456 0.88057 0.87511 0.91524 0.90242 0.93968 0.92049 0.97997 0.92931 0.95194 0.90296 0.88113 0.91699 0.78642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.47 127.77 1.47 2.38 16 2 N -0.38 -7.19 4.01 -369.57 -1.48 -8.67 16 3 C 0.06 1.06 11.40 83.54 0.95 2.02 16 4 C -0.25 -5.08 5.35 -20.14 -0.11 -5.19 16 5 C -0.01 -0.24 4.99 29.85 0.15 -0.09 16 6 C -0.12 -2.87 4.04 29.85 0.12 -2.75 16 7 C 0.51 16.23 7.70 87.66 0.68 16.91 16 8 O -0.59 -22.28 15.39 -3.04 -0.05 -22.33 16 9 N -0.61 -20.61 2.98 -818.12 -2.44 -23.05 16 10 C 0.12 4.16 6.42 86.36 0.55 4.71 16 11 C -0.11 -4.62 5.30 30.67 0.16 -4.46 16 12 C 0.05 2.15 2.06 -11.51 -0.02 2.13 16 13 C -0.54 -28.67 8.56 25.60 0.22 -28.45 16 14 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 15 C 0.02 0.98 5.30 84.65 0.45 1.43 16 16 N -0.91 -49.78 11.31 21.45 0.24 -49.54 16 17 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C -0.12 -4.96 5.16 30.68 0.16 -4.80 16 22 C 0.12 3.84 6.35 86.32 0.55 4.39 16 23 C 0.05 0.97 11.96 85.24 1.02 1.99 16 24 N -0.34 -8.00 12.58 -57.02 -0.72 -8.71 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.07 1.61 8.10 -2.39 -0.02 1.60 16 30 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.10 2.19 7.70 -2.39 -0.02 2.17 16 32 H 0.11 2.17 7.95 -2.39 -0.02 2.16 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.08 2.84 7.00 -2.39 -0.02 2.83 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 3.83 6.03 -2.39 -0.01 3.81 16 41 H 0.10 2.71 5.97 -2.39 -0.01 2.69 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.47 349.51 4.91 -62.56 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.98 Total: 15.10 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 6.34 Total: -9.78 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -4.40 Total: -89.97 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.47 4.91 -62.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323657338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.714 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds