Wall clock time and date at job start Tue Mar 31 2020 06:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46947 * 2 1 4 4 C 1.34774 * 120.00338 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99506 * 5.12159 * 4 3 2 6 6 C 1.50694 * 120.00403 * 185.12181 * 4 3 2 7 7 H 1.09000 * 109.47011 * 35.51385 * 6 4 3 8 8 N 1.46499 * 109.47171 * 155.51544 * 6 4 3 9 9 C 1.38828 * 120.00084 * 225.26524 * 8 6 4 10 10 C 1.39804 * 119.58238 * 353.97986 * 9 8 6 11 11 C 1.38594 * 119.48923 * 180.02562 * 10 9 8 12 12 C 1.38390 * 118.67929 * 359.97438 * 11 10 9 13 13 C 1.40547 * 119.15287 * 359.97438 * 12 11 10 14 14 C 1.41312 * 119.78701 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.40031 * 120.00406 * 180.02562 * 14 13 12 17 17 N 1.30742 * 119.99485 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00364 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46870 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47513 * 119.99624 * 18 16 14 21 21 H 1.48501 * 109.46832 * 240.00093 * 18 16 14 22 22 N 1.31951 * 119.58358 * 173.96934 * 9 8 6 23 23 C 1.52996 * 109.47381 * 275.51331 * 6 4 3 24 24 C 1.52994 * 109.47602 * 177.53931 * 23 6 4 25 25 C 1.52996 * 109.47398 * 297.54363 * 23 6 4 26 26 H 1.09003 * 109.46998 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47074 * 299.99993 * 1 2 3 28 28 H 1.08996 * 109.46771 * 60.00233 * 1 2 3 29 29 H 1.09000 * 109.47501 * 240.00203 * 2 1 3 30 30 H 1.08999 * 109.47065 * 119.99326 * 2 1 3 31 31 H 0.97000 * 120.00241 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00550 * 45.26873 * 8 6 4 33 33 H 1.08001 * 120.25451 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.65613 * 179.97438 * 11 10 9 35 35 H 1.08003 * 120.42412 * 180.02562 * 12 11 10 36 36 H 0.97003 * 119.99608 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47202 * 57.54098 * 23 6 4 38 38 H 1.09005 * 109.47009 * 62.91842 * 24 23 6 39 39 H 1.08998 * 109.47360 * 182.91766 * 24 23 6 40 40 H 1.09003 * 109.47234 * 302.91477 * 24 23 6 41 41 H 1.09009 * 109.47358 * 64.72791 * 25 23 6 42 42 H 1.08996 * 109.47630 * 184.72806 * 25 23 6 43 43 H 1.09000 * 109.47156 * 304.73190 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1308 0.7099 -0.0928 6 6 3.8466 3.0433 0.1170 7 1 3.1890 3.6095 0.7767 8 7 5.2034 3.0354 0.6694 9 6 5.5477 3.9256 1.6775 10 6 4.6350 4.9086 2.0716 11 6 4.9809 5.7966 3.0778 12 6 6.2284 5.6811 3.6658 13 6 7.1014 4.6710 3.2264 14 6 8.3782 4.5405 3.8178 15 1 8.6803 5.2155 4.6050 16 6 9.2518 3.5361 3.3833 17 7 8.8859 2.7188 2.4307 18 14 10.9399 3.3641 4.1645 19 1 11.1093 4.4041 5.2109 20 1 11.0663 2.0180 4.7788 21 1 11.9862 3.5339 3.1245 22 7 6.7321 3.8331 2.2518 23 6 3.8634 3.6942 -1.2675 24 6 4.3158 5.1502 -1.1411 25 6 4.8333 2.9358 -2.1758 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.3880 2.1185 0.0004 32 1 5.8613 2.4082 0.3308 33 1 3.6682 4.9760 1.5950 34 1 4.2907 6.5635 3.3967 35 1 6.5270 6.3579 4.4527 36 1 9.4910 2.0228 2.1299 37 1 2.8621 3.6608 -1.6969 38 1 5.3367 5.1818 -0.7603 39 1 4.2782 5.6286 -2.1198 40 1 3.6549 5.6777 -0.4533 41 1 4.4657 1.9218 -2.3338 42 1 4.9090 3.4482 -3.1348 43 1 5.8160 2.8969 -1.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324445058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:25 Heat of formation + Delta-G solvation = -6.667151 kcal Electronic energy + Delta-G solvation = -23765.409835 eV Core-core repulsion = 20424.257516 eV Total energy + Delta-G solvation = -3341.152319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03788 -38.19513 -36.39650 -35.17335 -33.65635 -32.50662 -30.81003 -30.30464 -28.91236 -26.96517 -26.34259 -25.27223 -22.96624 -21.50448 -21.04714 -20.81274 -19.21196 -17.40580 -17.18037 -16.22194 -15.91186 -15.57828 -14.99421 -14.86932 -14.49305 -14.23318 -13.84956 -13.57390 -13.30278 -12.97458 -12.70084 -12.61234 -12.34237 -12.10988 -12.00392 -11.80470 -11.68778 -11.63119 -11.25088 -11.03901 -10.96333 -10.83734 -10.64248 -10.54067 -10.30928 -9.86298 -9.71135 -9.39467 -9.05862 -8.83604 -7.89828 -7.46795 -6.50704 -6.28217 -4.44224 2.77240 2.89726 3.13027 3.15036 3.19139 3.28040 3.34969 4.02032 4.25552 4.72616 4.85335 4.89890 4.92681 5.05136 5.13678 5.16165 5.36662 5.61646 5.65153 5.73774 5.79584 5.85705 5.92450 6.08311 6.12704 6.15275 6.19726 6.24732 6.43507 6.51690 6.61146 6.70067 6.87272 6.90256 6.94054 7.28364 7.49577 7.62334 7.82523 7.93077 8.20871 8.33535 8.40030 8.72889 8.83424 9.14745 10.28252 10.44141 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004335 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.018516 B = 6458.162189 C = 6829.303581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.736 5.736 4 C 0.507 3.493 5 O -0.527 6.527 6 C 0.150 3.850 7 H 0.106 0.894 8 N -0.713 5.713 9 C 0.415 3.585 10 C -0.370 4.370 11 C -0.031 4.031 12 C -0.317 4.317 13 C 0.292 3.708 14 C -0.433 4.433 15 H 0.083 0.917 16 C 0.070 3.930 17 N -0.711 5.711 18 Si 0.904 3.096 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.274 1.274 22 N -0.528 5.528 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.405 0.595 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 -1.464 -7.378 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.390 5.390 4 C 0.293 3.707 5 O -0.402 6.402 6 C 0.038 3.962 7 H 0.124 0.876 8 N -0.350 5.350 9 C 0.175 3.825 10 C -0.396 4.396 11 C -0.056 4.056 12 C -0.340 4.340 13 C 0.166 3.834 14 C -0.465 4.465 15 H 0.101 0.899 16 C -0.155 4.155 17 N -0.332 5.332 18 Si 0.728 3.272 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.249 5.249 23 C -0.119 4.119 24 C -0.196 4.196 25 C -0.205 4.205 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.242 0.758 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.427 -2.909 -7.799 14.957 hybrid contribution -0.058 0.592 0.516 0.787 sum -12.485 -2.318 -7.283 14.639 Atomic orbital electron populations 1.21999 0.94624 1.03033 1.02474 1.21255 0.93990 0.83440 1.02296 1.46090 1.07260 1.08609 1.77087 1.21326 0.81972 0.92279 0.75163 1.90693 1.55240 1.46525 1.47723 1.20654 0.87707 0.91584 0.96225 0.87643 1.43831 1.09634 1.40996 1.40528 1.18474 0.90855 0.86521 0.86600 1.20603 1.01420 1.06568 1.10971 1.20567 0.95140 0.95723 0.94128 1.21522 0.97230 1.06669 1.08566 1.18198 0.92130 0.86065 0.87043 1.19626 0.97284 1.12647 1.16976 0.89882 1.26058 0.99928 0.95067 0.94448 1.70158 1.34008 1.10323 1.18737 0.86339 0.81905 0.79033 0.79907 1.18478 1.19963 1.19951 1.68212 1.14058 1.28889 1.13755 1.21476 0.99469 0.96620 0.94309 1.21777 1.03244 0.93911 1.00713 1.21812 1.00557 0.99359 0.98729 0.90987 0.91936 0.92041 0.91682 0.91687 0.76716 0.75828 0.89109 0.89044 0.88809 0.91882 0.91223 0.91301 0.93330 0.92478 0.93002 0.92953 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 10.03 37.16 0.37 -0.74 16 2 C 0.11 1.18 6.40 -4.04 -0.03 1.16 16 3 N -0.74 -8.47 5.55 -60.29 -0.33 -8.80 16 4 C 0.51 8.00 6.13 -10.99 -0.07 7.93 16 5 O -0.53 -10.41 15.82 5.56 0.09 -10.32 16 6 C 0.15 2.37 2.22 -69.09 -0.15 2.22 16 7 H 0.11 1.59 5.63 -51.93 -0.29 1.30 16 8 N -0.71 -14.71 3.91 -55.03 -0.22 -14.92 16 9 C 0.42 10.01 6.96 -155.32 -1.08 8.93 16 10 C -0.37 -8.13 8.44 -38.86 -0.33 -8.46 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.32 -7.97 9.83 -38.66 -0.38 -8.35 16 13 C 0.29 8.17 6.55 -85.00 -0.56 7.61 16 14 C -0.43 -11.88 9.14 -37.74 -0.34 -12.22 16 15 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 16 C 0.07 1.84 5.50 -17.34 -0.10 1.75 16 17 N -0.71 -19.44 11.46 55.55 0.64 -18.81 16 18 Si 0.90 19.14 29.56 -169.99 -5.02 14.11 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 N -0.53 -14.70 7.89 -10.33 -0.08 -14.78 16 23 C -0.10 -1.32 2.76 -90.63 -0.25 -1.57 16 24 C -0.14 -1.98 8.07 37.15 0.30 -1.68 16 25 C -0.15 -2.10 8.70 37.16 0.32 -1.77 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.40 3.39 8.48 -40.82 -0.35 3.04 16 32 H 0.40 9.11 7.54 -40.82 -0.31 8.80 16 33 H 0.09 1.71 5.07 -52.49 -0.27 1.44 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.09 2.21 8.06 -52.48 -0.42 1.78 16 36 H 0.27 6.76 8.29 -40.82 -0.34 6.42 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.22 7.29 -51.93 -0.38 0.84 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.78 7.24 -51.93 -0.38 0.41 16 41 H 0.05 0.76 7.19 -51.92 -0.37 0.38 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.11 6.89 -51.93 -0.36 0.75 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -31.88 349.12 -8.83 -40.71 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.47 Total: 13.85 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.69 Total: -6.30 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.01 Total: -57.31 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.88 -8.83 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324445058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.039 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds