Wall clock time and date at job start Tue Mar 31 2020 06:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46947 * 2 1 4 4 C 1.34774 * 120.00338 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99506 * 5.12159 * 4 3 2 6 6 C 1.50694 * 120.00403 * 185.12181 * 4 3 2 7 7 H 1.09000 * 109.47011 * 35.51385 * 6 4 3 8 8 N 1.46499 * 109.47171 * 155.51544 * 6 4 3 9 9 C 1.38828 * 120.00084 * 225.26524 * 8 6 4 10 10 C 1.39804 * 119.58238 * 353.97986 * 9 8 6 11 11 C 1.38594 * 119.48923 * 180.02562 * 10 9 8 12 12 C 1.38390 * 118.67929 * 359.97438 * 11 10 9 13 13 C 1.40547 * 119.15287 * 359.97438 * 12 11 10 14 14 C 1.41312 * 119.78701 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.40031 * 120.00406 * 180.02562 * 14 13 12 17 17 N 1.30742 * 119.99485 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00364 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46870 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47513 * 119.99624 * 18 16 14 21 21 H 1.48501 * 109.46832 * 240.00093 * 18 16 14 22 22 N 1.31951 * 119.58358 * 173.96934 * 9 8 6 23 23 C 1.52996 * 109.47381 * 275.51331 * 6 4 3 24 24 C 1.52994 * 109.47602 * 177.53931 * 23 6 4 25 25 C 1.52996 * 109.47398 * 297.54363 * 23 6 4 26 26 H 1.09003 * 109.46998 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47074 * 299.99993 * 1 2 3 28 28 H 1.08996 * 109.46771 * 60.00233 * 1 2 3 29 29 H 1.09000 * 109.47501 * 240.00203 * 2 1 3 30 30 H 1.08999 * 109.47065 * 119.99326 * 2 1 3 31 31 H 0.97000 * 120.00241 * 0.02562 * 3 2 1 32 32 H 0.96998 * 120.00550 * 45.26873 * 8 6 4 33 33 H 1.08001 * 120.25451 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.65613 * 179.97438 * 11 10 9 35 35 H 1.08003 * 120.42412 * 180.02562 * 12 11 10 36 36 H 0.97003 * 119.99608 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47202 * 57.54098 * 23 6 4 38 38 H 1.09005 * 109.47009 * 62.91842 * 24 23 6 39 39 H 1.08998 * 109.47360 * 182.91766 * 24 23 6 40 40 H 1.09003 * 109.47234 * 302.91477 * 24 23 6 41 41 H 1.09009 * 109.47358 * 64.72791 * 25 23 6 42 42 H 1.08996 * 109.47630 * 184.72806 * 25 23 6 43 43 H 1.09000 * 109.47156 * 304.73190 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1308 0.7099 -0.0928 6 6 3.8466 3.0433 0.1170 7 1 3.1890 3.6095 0.7767 8 7 5.2034 3.0354 0.6694 9 6 5.5477 3.9256 1.6775 10 6 4.6350 4.9086 2.0716 11 6 4.9809 5.7966 3.0778 12 6 6.2284 5.6811 3.6658 13 6 7.1014 4.6710 3.2264 14 6 8.3782 4.5405 3.8178 15 1 8.6803 5.2155 4.6050 16 6 9.2518 3.5361 3.3833 17 7 8.8859 2.7188 2.4307 18 14 10.9399 3.3641 4.1645 19 1 11.1093 4.4041 5.2109 20 1 11.0663 2.0180 4.7788 21 1 11.9862 3.5339 3.1245 22 7 6.7321 3.8331 2.2518 23 6 3.8634 3.6942 -1.2675 24 6 4.3158 5.1502 -1.1411 25 6 4.8333 2.9358 -2.1758 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.3880 2.1185 0.0004 32 1 5.8613 2.4082 0.3308 33 1 3.6682 4.9760 1.5950 34 1 4.2907 6.5635 3.3967 35 1 6.5270 6.3579 4.4527 36 1 9.4910 2.0228 2.1299 37 1 2.8621 3.6608 -1.6969 38 1 5.3367 5.1818 -0.7603 39 1 4.2782 5.6286 -2.1198 40 1 3.6549 5.6777 -0.4533 41 1 4.4657 1.9218 -2.3338 42 1 4.9090 3.4482 -3.1348 43 1 5.8160 2.8969 -1.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324445058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:24 Heat of formation + Delta-G solvation = -27.886335 kcal Electronic energy + Delta-G solvation = -23766.329968 eV Core-core repulsion = 20424.257516 eV Total energy + Delta-G solvation = -3342.072452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34789 -39.93986 -37.76680 -36.27676 -35.47948 -34.12448 -32.22299 -31.70205 -30.61549 -28.20359 -27.70644 -27.09929 -23.84324 -23.35343 -22.58354 -22.13209 -20.56959 -19.19836 -18.66216 -17.58717 -17.29413 -16.77903 -16.52220 -16.43015 -15.75284 -15.72012 -15.34545 -14.93985 -14.77604 -14.43375 -14.23188 -13.97665 -13.67909 -13.33080 -13.16251 -12.98236 -12.88506 -12.72512 -12.68508 -12.58257 -12.39619 -12.33367 -12.20245 -11.89451 -11.79013 -11.61704 -11.33762 -10.96369 -10.52543 -10.10741 -9.81593 -9.39856 -8.29197 -8.20261 -6.45994 1.06817 1.37037 1.39689 1.53875 1.55283 1.58780 2.07280 2.24297 2.74174 2.94466 3.69399 3.81938 3.90848 4.12577 4.13468 4.20732 4.24396 4.40292 4.48011 4.52278 4.69314 4.78317 4.82296 4.92660 4.97760 4.98666 5.03948 5.06403 5.08268 5.11927 5.16025 5.27027 5.33760 5.39583 5.46670 5.53104 5.74403 5.99763 6.08764 6.23645 6.46254 6.62215 6.82713 6.93711 7.21841 7.23014 8.37800 8.53501 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004335 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.018516 B = 6458.162189 C = 6829.303581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.715 5.715 4 C 0.506 3.494 5 O -0.576 6.576 6 C 0.147 3.853 7 H 0.121 0.879 8 N -0.713 5.713 9 C 0.400 3.600 10 C -0.356 4.356 11 C -0.028 4.028 12 C -0.344 4.344 13 C 0.260 3.740 14 C -0.474 4.474 15 H 0.086 0.914 16 C 0.025 3.975 17 N -0.754 5.754 18 Si 0.984 3.016 19 H -0.253 1.253 20 H -0.270 1.270 21 H -0.268 1.268 22 N -0.569 5.569 23 C -0.090 4.090 24 C -0.134 4.134 25 C -0.143 4.143 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.418 0.582 32 H 0.390 0.610 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.273 0.727 37 H 0.113 0.887 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.265 -0.568 -8.063 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.369 5.369 4 C 0.291 3.709 5 O -0.455 6.455 6 C 0.037 3.963 7 H 0.138 0.862 8 N -0.347 5.347 9 C 0.159 3.841 10 C -0.381 4.381 11 C -0.052 4.052 12 C -0.367 4.367 13 C 0.133 3.867 14 C -0.506 4.506 15 H 0.104 0.896 16 C -0.196 4.196 17 N -0.377 5.377 18 Si 0.805 3.195 19 H -0.176 1.176 20 H -0.195 1.195 21 H -0.192 1.192 22 N -0.291 5.291 23 C -0.110 4.110 24 C -0.191 4.191 25 C -0.200 4.200 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.255 0.745 32 H 0.225 0.775 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.277 -1.987 -8.506 17.598 hybrid contribution 0.587 0.316 0.630 0.917 sum -14.690 -1.672 -7.875 16.752 Atomic orbital electron populations 1.21945 0.91243 1.04243 1.03570 1.21386 0.96630 0.82321 1.01057 1.45949 1.06039 1.10006 1.74919 1.21304 0.83049 0.91601 0.74915 1.90684 1.56801 1.47671 1.50297 1.20982 0.85346 0.92275 0.97741 0.86189 1.43981 1.11345 1.39776 1.39603 1.18901 0.90561 0.87618 0.86982 1.20981 1.02261 1.04829 1.10018 1.21022 0.94665 0.96248 0.93258 1.21680 0.98435 1.06841 1.09752 1.18652 0.93201 0.87154 0.87702 1.19965 0.98376 1.14083 1.18154 0.89593 1.26966 1.03923 0.94108 0.94612 1.70288 1.35696 1.11216 1.20470 0.85140 0.76306 0.79102 0.78985 1.17582 1.19467 1.19248 1.68141 1.16241 1.29991 1.14721 1.21491 1.01362 0.95571 0.92551 1.21723 1.00733 0.94604 1.02076 1.21754 0.98986 0.99593 0.99683 0.89802 0.91209 0.90469 0.92440 0.93612 0.74503 0.77506 0.85224 0.84912 0.88163 0.91662 0.86900 0.95607 0.91014 0.91479 0.93572 0.90838 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.03 71.98 0.72 -0.85 16 2 C 0.11 2.09 6.40 86.38 0.55 2.65 16 3 N -0.71 -14.74 5.55 -463.06 -2.57 -17.31 16 4 C 0.51 15.45 6.13 87.66 0.54 15.98 16 5 O -0.58 -23.25 15.82 -3.03 -0.05 -23.30 16 6 C 0.15 4.41 2.22 44.24 0.10 4.51 16 7 H 0.12 3.21 5.63 -2.39 -0.01 3.20 16 8 N -0.71 -30.01 3.91 -328.03 -1.28 -31.29 16 9 C 0.40 19.56 6.96 133.42 0.93 20.49 16 10 C -0.36 -15.04 8.44 22.73 0.19 -14.84 16 11 C -0.03 -1.20 10.15 22.39 0.23 -0.98 16 12 C -0.34 -17.53 9.83 22.87 0.22 -17.31 16 13 C 0.26 15.12 6.55 40.17 0.26 15.39 16 14 C -0.47 -27.14 9.14 23.46 0.21 -26.93 16 15 H 0.09 4.63 7.85 -2.91 -0.02 4.60 16 16 C 0.03 1.36 5.50 85.29 0.47 1.83 16 17 N -0.75 -43.43 11.46 21.84 0.25 -43.18 16 18 Si 0.98 40.64 29.56 68.60 2.03 42.67 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 N -0.57 -33.03 7.89 -186.58 -1.47 -34.50 16 23 C -0.09 -2.17 2.76 -10.80 -0.03 -2.20 16 24 C -0.13 -3.47 8.07 71.98 0.58 -2.89 16 25 C -0.14 -3.96 8.70 71.98 0.63 -3.33 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.42 5.43 8.48 -92.71 -0.79 4.65 16 32 H 0.39 18.63 7.54 -92.71 -0.70 17.93 16 33 H 0.13 4.37 5.07 -2.91 -0.01 4.36 16 34 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 36 H 0.27 14.40 8.29 -92.71 -0.77 13.63 16 37 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.02 0.88 7.29 -2.38 -0.02 0.87 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.59 7.24 -2.39 -0.02 1.57 16 41 H 0.05 1.32 7.19 -2.38 -0.02 1.30 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.03 1.11 6.89 -2.39 -0.02 1.09 16 Total: -1.00 -75.02 349.12 2.06 -72.96 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.45 Total: 42.45 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.61 Total: -8.49 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.07 Total: -126.29 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -75.02 2.06 -72.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324445058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.073 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds