Wall clock time and date at job start Tue Mar 31 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34948 * 126.03673 * 2 1 4 4 C 1.35323 * 107.74101 * 179.84150 * 3 2 1 5 5 C 1.39866 * 107.91915 * 0.42581 * 4 3 2 6 6 C 1.50704 * 125.89567 * 179.76092 * 5 4 3 7 7 C 1.53001 * 109.47245 * 124.99901 * 6 5 4 8 8 C 1.50698 * 109.46760 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00434 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99643 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62908 * 359.71645 * 10 8 7 12 12 C 1.53621 * 108.54335 * 126.37120 * 11 10 8 13 13 C 1.53045 * 109.24091 * 54.85715 * 12 11 10 14 14 C 1.53044 * 109.53428 * 298.50987 * 13 12 11 15 15 H 1.08998 * 109.49625 * 301.41320 * 14 13 12 16 16 C 1.50700 * 109.52214 * 181.33545 * 14 13 12 17 17 H 1.08007 * 120.00221 * 0.14157 * 16 14 13 18 18 C 1.37876 * 120.00031 * 180.14561 * 16 14 13 19 19 N 1.31517 * 119.99984 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 120.00101 * 0.02562 * 18 16 14 21 21 H 1.48497 * 109.47305 * 89.99529 * 20 18 16 22 22 H 1.48506 * 109.47068 * 210.00169 * 20 18 16 23 23 H 1.48501 * 109.47041 * 329.99742 * 20 18 16 24 24 C 1.46921 * 120.63103 * 180.02562 * 10 8 7 25 25 N 1.30835 * 108.20661 * 359.73480 * 5 4 3 26 26 H 1.09001 * 109.47060 * 269.71710 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.71199 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.71282 * 1 2 3 29 29 H 1.07995 * 126.12877 * 0.02562 * 3 2 1 30 30 H 1.08003 * 126.03475 * 180.16478 * 4 3 2 31 31 H 1.09001 * 109.47146 * 244.99869 * 6 5 4 32 32 H 1.08999 * 109.46925 * 4.99659 * 6 5 4 33 33 H 1.09001 * 109.47023 * 300.00044 * 7 6 5 34 34 H 1.08993 * 109.47112 * 59.99642 * 7 6 5 35 35 H 1.09004 * 109.58743 * 246.20409 * 11 10 8 36 36 H 1.09000 * 109.58768 * 6.62960 * 11 10 8 37 37 H 1.08993 * 109.63616 * 294.86721 * 12 11 10 38 38 H 1.09004 * 109.43224 * 174.71964 * 12 11 10 39 39 H 1.09001 * 109.46069 * 178.49305 * 13 12 11 40 40 H 1.08998 * 109.46232 * 58.52791 * 13 12 11 41 41 H 0.96999 * 119.99830 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58637 * 353.37031 * 24 10 8 43 43 H 1.08998 * 109.58773 * 113.79522 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6664 0.0036 5 6 3.5346 -0.7322 -0.0041 6 6 4.7496 -1.6237 -0.0085 7 6 4.6709 -2.5989 1.1679 8 6 5.8862 -3.4900 1.1637 9 8 6.7318 -3.3584 0.3044 10 7 6.0329 -4.4339 2.1146 11 6 5.0196 -4.6020 3.1651 12 6 4.5721 -6.0715 3.1817 13 6 5.7999 -6.9708 3.3435 14 6 6.7429 -6.7681 2.1552 15 1 6.2168 -7.0010 1.2295 16 6 7.9359 -7.6776 2.2983 17 1 8.0135 -8.3368 3.1503 18 6 8.9286 -7.6682 1.3414 19 7 9.9696 -8.4623 1.4660 20 14 8.7951 -6.5276 -0.1318 21 1 9.4359 -5.2271 0.1893 22 1 9.4796 -7.1424 -1.2975 23 1 7.3634 -6.3066 -0.4585 24 6 7.2125 -5.3098 2.1242 25 7 2.2891 -1.1328 -0.0062 26 1 -0.3633 -0.0051 1.0277 27 1 -0.3633 0.8926 -0.5094 28 1 -0.3634 -0.8874 -0.5183 29 1 1.9282 2.1193 0.0004 30 1 4.4212 1.2962 0.0070 31 1 4.7860 -2.1838 -0.9429 32 1 5.6482 -1.0138 0.0847 33 1 4.6346 -2.0389 2.1023 34 1 3.7724 -3.2088 1.0747 35 1 5.4479 -4.3367 4.1318 36 1 4.1641 -3.9605 2.9537 37 1 4.0666 -6.3110 2.2462 38 1 3.8900 -6.2336 4.0163 39 1 5.4839 -8.0133 3.3825 40 1 6.3190 -6.7140 4.2669 41 1 10.6681 -8.4554 0.7930 42 1 7.8044 -5.1355 1.2256 43 1 7.8155 -5.1010 3.0078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328371800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:12 Heat of formation + Delta-G solvation = 36.832253 kcal Electronic energy + Delta-G solvation = -23291.993859 eV Core-core repulsion = 19952.727816 eV Total energy + Delta-G solvation = -3339.266043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34978 -39.70414 -37.01788 -34.65056 -33.39911 -32.06944 -31.77906 -30.47116 -30.09713 -27.35559 -25.24000 -25.13022 -23.31891 -21.98246 -21.34120 -19.88923 -19.42833 -18.35039 -17.32252 -16.75236 -16.56889 -15.78789 -15.41907 -15.29348 -14.46982 -14.18283 -14.00050 -13.86948 -13.59487 -13.52796 -13.15252 -12.91845 -12.78585 -12.68780 -12.29974 -12.21094 -12.08842 -11.84356 -11.25849 -11.20154 -11.02285 -10.63425 -10.54431 -10.34803 -10.05852 -9.73027 -9.52934 -9.36537 -9.12962 -9.01429 -8.74723 -8.55642 -7.99396 -6.06791 -4.08242 1.68276 2.30068 2.62042 3.06023 3.42422 3.47079 3.56165 3.62544 4.24061 4.46760 4.52426 4.66672 4.79781 4.98109 5.01646 5.06427 5.13978 5.24955 5.26119 5.38232 5.44178 5.56303 5.61285 5.62996 5.78315 5.87969 6.05010 6.07893 6.09653 6.14477 6.23658 6.44506 6.51490 6.58113 6.69302 6.78974 6.79990 6.93955 7.18945 7.48505 7.56007 7.76050 7.94647 8.50196 8.65504 8.96158 9.55123 11.05175 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.003668 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.001413 B = 7631.674141 C = 8357.738270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.050 3.950 4 C -0.267 4.267 5 C 0.081 3.919 6 C -0.024 4.024 7 C -0.130 4.130 8 C 0.506 3.494 9 O -0.548 6.548 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.137 4.137 13 C -0.100 4.100 14 C 0.004 3.996 15 H 0.030 0.970 16 C -0.516 4.516 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.263 1.263 24 C 0.102 3.898 25 N -0.293 5.293 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.172 0.828 30 H 0.148 0.852 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.407 19.225 0.653 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.096 4.096 4 C -0.297 4.297 5 C -0.086 4.086 6 C -0.063 4.063 7 C -0.171 4.171 8 C 0.294 3.706 9 O -0.427 6.427 10 N -0.341 5.341 11 C -0.014 4.014 12 C -0.175 4.175 13 C -0.138 4.138 14 C -0.015 4.015 15 H 0.048 0.952 16 C -0.554 4.554 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.711 3.289 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.188 1.188 24 C -0.019 4.019 25 N -0.116 5.116 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.189 0.811 30 H 0.166 0.834 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.749 18.240 0.123 26.883 hybrid contribution 0.441 1.397 -0.724 1.634 sum -19.308 19.636 -0.601 27.545 Atomic orbital electron populations 1.21827 0.74406 1.04366 1.03290 1.48532 1.06558 1.03905 1.57336 1.22512 0.91245 0.93390 1.02464 1.21469 0.97062 0.94497 1.16647 1.22402 0.93280 0.94063 0.98809 1.19786 0.92071 0.95234 0.99250 1.21604 0.97672 0.97654 1.00177 1.20602 0.87736 0.80969 0.81299 1.90682 1.44332 1.70454 1.37209 1.48436 1.23587 1.34458 1.27662 1.21793 0.91015 0.97571 0.91049 1.22062 0.99023 0.94786 1.01609 1.21439 0.94481 0.98326 0.99558 1.19493 0.95985 0.91028 0.95020 0.95193 1.20963 1.03174 1.21676 1.09604 0.90514 1.25046 0.95038 0.95196 0.97741 1.69896 1.09797 1.38283 1.35507 0.86964 0.79313 0.80326 0.82331 1.19901 1.22386 1.18812 1.22576 0.86004 0.91056 1.02223 1.77350 1.01373 1.07604 1.25273 0.90820 0.89654 0.89326 0.81059 0.83439 0.89344 0.89080 0.89199 0.88600 0.91549 0.90579 0.91969 0.91729 0.92275 0.92543 0.92547 0.90327 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.24 16 2 N -0.38 -3.78 4.01 -68.16 -0.27 -4.06 16 3 C 0.05 0.43 11.49 -17.22 -0.20 0.23 16 4 C -0.27 -2.82 10.72 -40.01 -0.43 -3.25 16 5 C 0.08 1.03 6.49 -82.41 -0.53 0.49 16 6 C -0.02 -0.32 5.08 -27.88 -0.14 -0.46 16 7 C -0.13 -1.80 4.00 -27.88 -0.11 -1.92 16 8 C 0.51 9.48 7.70 -10.98 -0.08 9.40 16 9 O -0.55 -12.48 15.39 5.56 0.09 -12.39 16 10 N -0.61 -11.51 2.97 -172.48 -0.51 -12.03 16 11 C 0.11 1.57 6.37 -3.49 -0.02 1.55 16 12 C -0.14 -2.06 6.10 -26.39 -0.16 -2.22 16 13 C -0.10 -1.92 5.11 -26.69 -0.14 -2.05 16 14 C 0.00 0.10 1.84 -91.63 -0.17 -0.07 16 15 H 0.03 0.76 7.21 -51.93 -0.37 0.39 16 16 C -0.52 -14.55 9.15 -34.44 -0.31 -14.86 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 20 Si 0.88 23.76 24.32 -169.99 -4.13 19.63 16 21 H -0.27 -7.41 6.92 56.52 0.39 -7.02 16 22 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 23 H -0.26 -7.14 6.53 56.52 0.37 -6.77 16 24 C 0.10 2.34 5.11 -3.69 -0.02 2.32 16 25 N -0.29 -3.87 12.54 33.67 0.42 -3.45 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.09 1.07 7.93 -51.93 -0.41 0.66 16 34 H 0.10 1.28 7.70 -51.93 -0.40 0.88 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.89 5.93 -51.93 -0.31 0.58 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.08 2.03 2.32 -51.93 -0.12 1.91 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -36.09 342.78 -6.91 -43.00 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.70 Total: -1.22 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.73 Total: -7.55 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.41 Total: -46.63 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.13 Total: 19.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.09 -6.91 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328371800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.831 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds