Wall clock time and date at job start Tue Mar 31 2020 07:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34948 * 126.03673 * 2 1 4 4 C 1.35323 * 107.74101 * 179.84150 * 3 2 1 5 5 C 1.39866 * 107.91915 * 0.42581 * 4 3 2 6 6 C 1.50704 * 125.89567 * 179.76092 * 5 4 3 7 7 C 1.53001 * 109.47245 * 124.99901 * 6 5 4 8 8 C 1.50698 * 109.46760 * 180.02562 * 7 6 5 9 9 O 1.21274 * 120.00434 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99643 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62908 * 359.71645 * 10 8 7 12 12 C 1.53621 * 108.54335 * 126.37120 * 11 10 8 13 13 C 1.53045 * 109.24091 * 54.85715 * 12 11 10 14 14 C 1.53044 * 109.53428 * 298.50987 * 13 12 11 15 15 H 1.08998 * 109.49625 * 301.41320 * 14 13 12 16 16 C 1.50700 * 109.52214 * 181.33545 * 14 13 12 17 17 H 1.08007 * 120.00221 * 0.14157 * 16 14 13 18 18 C 1.37876 * 120.00031 * 180.14561 * 16 14 13 19 19 N 1.31517 * 119.99984 * 180.02562 * 18 16 14 20 20 Si 1.86797 * 120.00101 * 0.02562 * 18 16 14 21 21 H 1.48497 * 109.47305 * 89.99529 * 20 18 16 22 22 H 1.48506 * 109.47068 * 210.00169 * 20 18 16 23 23 H 1.48501 * 109.47041 * 329.99742 * 20 18 16 24 24 C 1.46921 * 120.63103 * 180.02562 * 10 8 7 25 25 N 1.30835 * 108.20661 * 359.73480 * 5 4 3 26 26 H 1.09001 * 109.47060 * 269.71710 * 1 2 3 27 27 H 1.09004 * 109.47073 * 29.71199 * 1 2 3 28 28 H 1.09000 * 109.47212 * 149.71282 * 1 2 3 29 29 H 1.07995 * 126.12877 * 0.02562 * 3 2 1 30 30 H 1.08003 * 126.03475 * 180.16478 * 4 3 2 31 31 H 1.09001 * 109.47146 * 244.99869 * 6 5 4 32 32 H 1.08999 * 109.46925 * 4.99659 * 6 5 4 33 33 H 1.09001 * 109.47023 * 300.00044 * 7 6 5 34 34 H 1.08993 * 109.47112 * 59.99642 * 7 6 5 35 35 H 1.09004 * 109.58743 * 246.20409 * 11 10 8 36 36 H 1.09000 * 109.58768 * 6.62960 * 11 10 8 37 37 H 1.08993 * 109.63616 * 294.86721 * 12 11 10 38 38 H 1.09004 * 109.43224 * 174.71964 * 12 11 10 39 39 H 1.09001 * 109.46069 * 178.49305 * 13 12 11 40 40 H 1.08998 * 109.46232 * 58.52791 * 13 12 11 41 41 H 0.96999 * 119.99830 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.58637 * 353.37031 * 24 10 8 43 43 H 1.08998 * 109.58773 * 113.79522 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6664 0.0036 5 6 3.5346 -0.7322 -0.0041 6 6 4.7496 -1.6237 -0.0085 7 6 4.6709 -2.5989 1.1679 8 6 5.8862 -3.4900 1.1637 9 8 6.7318 -3.3584 0.3044 10 7 6.0329 -4.4339 2.1146 11 6 5.0196 -4.6020 3.1651 12 6 4.5721 -6.0715 3.1817 13 6 5.7999 -6.9708 3.3435 14 6 6.7429 -6.7681 2.1552 15 1 6.2168 -7.0010 1.2295 16 6 7.9359 -7.6776 2.2983 17 1 8.0135 -8.3368 3.1503 18 6 8.9286 -7.6682 1.3414 19 7 9.9696 -8.4623 1.4660 20 14 8.7951 -6.5276 -0.1318 21 1 9.4359 -5.2271 0.1893 22 1 9.4796 -7.1424 -1.2975 23 1 7.3634 -6.3066 -0.4585 24 6 7.2125 -5.3098 2.1242 25 7 2.2891 -1.1328 -0.0062 26 1 -0.3633 -0.0051 1.0277 27 1 -0.3633 0.8926 -0.5094 28 1 -0.3634 -0.8874 -0.5183 29 1 1.9282 2.1193 0.0004 30 1 4.4212 1.2962 0.0070 31 1 4.7860 -2.1838 -0.9429 32 1 5.6482 -1.0138 0.0847 33 1 4.6346 -2.0389 2.1023 34 1 3.7724 -3.2088 1.0747 35 1 5.4479 -4.3367 4.1318 36 1 4.1641 -3.9605 2.9537 37 1 4.0666 -6.3110 2.2462 38 1 3.8900 -6.2336 4.0163 39 1 5.4839 -8.0133 3.3825 40 1 6.3190 -6.7140 4.2669 41 1 10.6681 -8.4554 0.7930 42 1 7.8044 -5.1355 1.2256 43 1 7.8155 -5.1010 3.0078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328371800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:12 Heat of formation + Delta-G solvation = 11.923652 kcal Electronic energy + Delta-G solvation = -23293.073977 eV Core-core repulsion = 19952.727816 eV Total energy + Delta-G solvation = -3340.346161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.10068 -41.18317 -38.58434 -35.61455 -35.27212 -33.68585 -32.84502 -32.08115 -30.89463 -28.32507 -26.97256 -26.38250 -24.57337 -23.55123 -22.02876 -21.35782 -20.49384 -19.77263 -18.91221 -18.39106 -17.64650 -16.94026 -16.78619 -16.35803 -16.21980 -15.46568 -15.26542 -15.06715 -14.91708 -14.69985 -14.51517 -14.32416 -14.02928 -13.68535 -13.48251 -13.36971 -13.23652 -13.00574 -12.96512 -12.70529 -12.33599 -12.24307 -12.11731 -11.79733 -11.60142 -11.46420 -11.27402 -11.05761 -10.81969 -10.71481 -10.16714 -9.56575 -9.46105 -8.40348 -6.41862 0.97099 1.22191 1.28458 1.40782 1.61845 1.70757 1.80084 2.11334 2.21057 2.96866 3.44006 3.68770 3.87663 3.96954 4.11126 4.14089 4.17019 4.18043 4.31043 4.44473 4.48210 4.49568 4.57422 4.67841 4.68454 4.73527 4.74373 4.86040 4.89884 4.97529 4.99505 5.06668 5.15886 5.18878 5.22054 5.40353 5.52548 5.62370 5.69484 5.70988 6.21713 6.25399 6.50769 6.66991 6.78339 7.18438 7.23887 8.75766 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.003668 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.001413 B = 7631.674141 C = 8357.738270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.065 3.935 4 C -0.291 4.291 5 C 0.065 3.935 6 C -0.019 4.019 7 C -0.112 4.112 8 C 0.499 3.501 9 O -0.597 6.597 10 N -0.612 5.612 11 C 0.103 3.897 12 C -0.128 4.128 13 C -0.098 4.098 14 C 0.004 3.996 15 H 0.012 0.988 16 C -0.511 4.511 17 H 0.051 0.949 18 C 0.029 3.971 19 N -0.937 5.937 20 Si 0.938 3.062 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.270 1.270 24 C 0.108 3.892 25 N -0.331 5.331 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.216 0.784 30 H 0.159 0.841 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.267 0.733 42 H 0.048 0.952 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.856 22.012 1.682 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.082 4.082 4 C -0.320 4.320 5 C -0.100 4.100 6 C -0.059 4.059 7 C -0.152 4.152 8 C 0.289 3.711 9 O -0.478 6.478 10 N -0.344 5.344 11 C -0.018 4.018 12 C -0.166 4.166 13 C -0.136 4.136 14 C -0.016 4.016 15 H 0.030 0.970 16 C -0.550 4.550 17 H 0.070 0.930 18 C -0.170 4.170 19 N -0.578 5.578 20 Si 0.768 3.232 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.196 1.196 24 C -0.015 4.015 25 N -0.156 5.156 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.232 0.768 30 H 0.176 0.824 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.246 21.022 1.176 31.364 hybrid contribution 1.418 0.542 -0.997 1.816 sum -21.828 21.564 0.179 30.684 Atomic orbital electron populations 1.22190 0.72047 1.05798 1.04644 1.48905 1.07942 1.03435 1.56181 1.23162 0.90366 0.94826 0.99825 1.21738 0.98668 0.93748 1.17843 1.22258 0.92824 0.94897 1.00065 1.19635 0.92973 0.95184 0.98102 1.21539 0.95030 0.96935 1.01668 1.21501 0.88507 0.80935 0.80146 1.90656 1.46361 1.71776 1.39051 1.48499 1.23257 1.33689 1.28952 1.22178 0.91123 0.97905 0.90573 1.22023 0.97419 0.94007 1.03168 1.21382 0.95428 0.99457 0.97308 1.19432 0.95001 0.90765 0.96411 0.97034 1.21331 1.04272 1.21373 1.08003 0.93050 1.25613 0.95148 0.96356 0.99865 1.69985 1.10868 1.40182 1.36732 0.86058 0.78538 0.78432 0.80162 1.20714 1.22069 1.19575 1.22078 0.87512 0.91307 1.00594 1.77244 1.01862 1.09753 1.26696 0.89438 0.86418 0.89808 0.76759 0.82381 0.91624 0.89304 0.86334 0.87495 0.89529 0.86857 0.92486 0.87472 0.92661 0.92116 0.92341 0.93436 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.47 127.77 1.47 2.15 16 2 N -0.38 -6.42 4.01 -369.54 -1.48 -7.90 16 3 C 0.06 0.89 11.49 83.54 0.96 1.85 16 4 C -0.29 -5.48 10.72 21.99 0.24 -5.25 16 5 C 0.06 1.55 6.49 43.10 0.28 1.83 16 6 C -0.02 -0.51 5.08 29.85 0.15 -0.36 16 7 C -0.11 -2.86 4.00 29.85 0.12 -2.74 16 8 C 0.50 18.27 7.70 87.66 0.67 18.94 16 9 O -0.60 -27.63 15.39 -3.01 -0.05 -27.67 16 10 N -0.61 -22.23 2.97 -818.00 -2.43 -24.65 16 11 C 0.10 2.58 6.37 86.51 0.55 3.13 16 12 C -0.13 -3.40 6.10 30.82 0.19 -3.22 16 13 C -0.10 -3.60 5.11 30.62 0.16 -3.45 16 14 C 0.00 0.17 1.84 -11.45 -0.02 0.15 16 15 H 0.01 0.59 7.21 -2.39 -0.02 0.58 16 16 C -0.51 -29.59 9.15 25.60 0.23 -29.35 16 17 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 18 C 0.03 1.75 5.45 84.65 0.46 2.21 16 19 N -0.94 -59.98 13.96 21.45 0.30 -59.69 16 20 Si 0.94 51.43 24.32 68.60 1.67 53.10 16 21 H -0.28 -15.54 6.92 99.48 0.69 -14.86 16 22 H -0.29 -15.68 7.11 99.48 0.71 -14.98 16 23 H -0.27 -14.93 6.53 99.48 0.65 -14.28 16 24 C 0.11 4.95 5.11 86.38 0.44 5.39 16 25 N -0.33 -8.12 12.54 -47.38 -0.59 -8.72 16 26 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.22 0.85 8.06 -2.91 -0.02 0.82 16 30 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 32 H 0.09 2.33 8.08 -2.39 -0.02 2.31 16 33 H 0.12 2.39 7.93 -2.39 -0.02 2.37 16 34 H 0.11 2.55 7.70 -2.39 -0.02 2.54 16 35 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.11 2.05 5.93 -2.39 -0.01 2.04 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 42 H 0.05 2.50 2.32 -2.39 -0.01 2.49 16 43 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -82.83 342.78 4.23 -78.59 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.92 Total: 5.65 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.90 Total: -8.71 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -4.20 Total: -100.96 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 1.67 Total: 53.10 kcal Total: -82.83 4.23 -78.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328371800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.516 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds