Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34942 * 126.04134 * 2 1 4 4 C 1.35316 * 107.74590 * 179.97438 * 3 2 1 5 5 C 1.39865 * 107.92284 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.89818 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46682 * 125.00571 * 6 5 4 8 8 C 1.50703 * 109.46682 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00247 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99437 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63230 * 359.71817 * 10 8 7 12 12 C 1.52758 * 109.00832 * 233.58390 * 11 10 8 13 13 C 1.53035 * 109.38264 * 305.58878 * 12 11 10 14 14 C 1.53038 * 109.53819 * 61.24241 * 13 12 11 15 15 H 1.09000 * 109.50015 * 58.58608 * 14 13 12 16 16 C 1.50699 * 109.49625 * 178.68001 * 14 13 12 17 17 H 1.07995 * 120.00525 * 5.26033 * 16 14 13 18 18 C 1.37886 * 120.00015 * 185.26012 * 16 14 13 19 19 N 1.31516 * 119.99598 * 9.55016 * 18 16 14 20 20 Si 1.86797 * 120.00216 * 189.54649 * 18 16 14 21 21 H 1.48491 * 109.47165 * 94.99214 * 20 18 16 22 22 H 1.48500 * 109.46826 * 214.99092 * 20 18 16 23 23 H 1.48503 * 109.46927 * 334.98879 * 20 18 16 24 24 C 1.46927 * 120.62740 * 180.02562 * 10 8 7 25 25 N 1.30841 * 108.20226 * 0.26786 * 5 4 3 26 26 H 1.09000 * 109.46675 * 90.00240 * 1 2 3 27 27 H 1.09002 * 109.47550 * 210.00418 * 1 2 3 28 28 H 1.09001 * 109.46830 * 330.00434 * 1 2 3 29 29 H 1.08003 * 126.12824 * 359.96208 * 3 2 1 30 30 H 1.08003 * 126.03760 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47247 * 5.00835 * 6 5 4 32 32 H 1.09003 * 109.47094 * 245.00364 * 6 5 4 33 33 H 1.09003 * 109.47187 * 299.99736 * 7 6 5 34 34 H 1.08999 * 109.47064 * 60.00152 * 7 6 5 35 35 H 1.08998 * 109.59073 * 353.42643 * 11 10 8 36 36 H 1.09004 * 109.58580 * 113.84462 * 11 10 8 37 37 H 1.09002 * 109.56253 * 185.55511 * 12 11 10 38 38 H 1.08998 * 109.36356 * 65.50424 * 12 11 10 39 39 H 1.09006 * 109.46297 * 301.21705 * 13 12 11 40 40 H 1.09009 * 109.46080 * 181.26111 * 13 12 11 41 41 H 0.97003 * 119.99665 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.58559 * 246.15617 * 24 10 8 43 43 H 1.09005 * 109.58894 * 6.57779 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 0.0006 5 6 3.5346 -0.7323 0.0015 6 6 4.7496 -1.6238 0.0019 7 6 4.6714 -2.5919 1.1842 8 6 5.8867 -3.4830 1.1849 9 8 6.7323 -3.3560 0.3248 10 7 6.0343 -4.4204 2.1420 11 6 5.0221 -4.5814 3.1946 12 6 5.7063 -4.5065 4.5584 13 6 6.8406 -5.5322 4.6145 14 6 7.8759 -5.2100 3.5345 15 1 8.2623 -4.2027 3.6899 16 6 9.0084 -6.2013 3.6117 17 1 8.9524 -7.0328 4.2986 18 6 10.1161 -6.0467 2.8054 19 7 10.2734 -4.9423 2.1088 20 14 11.3934 -7.4058 2.7023 21 1 11.1016 -8.2716 1.5318 22 1 12.7433 -6.8058 2.5499 23 1 11.3509 -8.2202 3.9434 24 6 7.2139 -5.2963 2.1563 25 7 2.2891 -1.1329 -0.0043 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.9283 2.1193 -0.0006 30 1 4.4212 1.2961 0.0003 31 1 5.6482 -1.0134 0.0910 32 1 4.7855 -2.1895 -0.9292 33 1 4.6356 -2.0262 2.1152 34 1 3.7728 -3.2023 1.0951 35 1 4.2818 -3.7854 3.1145 36 1 4.5335 -5.5498 3.0867 37 1 4.9811 -4.7227 5.3429 38 1 6.1131 -3.5058 4.7042 39 1 6.4366 -6.5302 4.4442 40 1 7.3153 -5.4954 5.5952 41 1 11.0525 -4.8336 1.5412 42 1 6.9081 -6.3243 1.9618 43 1 7.9193 -4.9719 1.3912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328371804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = 28.127511 kcal Electronic energy + Delta-G solvation = -23087.112990 eV Core-core repulsion = 19747.469481 eV Total energy + Delta-G solvation = -3339.643509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25436 -39.39243 -36.75528 -34.51389 -33.32130 -31.93238 -31.59320 -30.10018 -29.75961 -27.21587 -25.16171 -24.85087 -23.21462 -21.77242 -21.25010 -19.84956 -19.33804 -18.06841 -17.19796 -16.54791 -15.98251 -15.67476 -15.19939 -14.99118 -14.49575 -14.19226 -13.86813 -13.65508 -13.55570 -13.30575 -12.85318 -12.74441 -12.59016 -12.57084 -12.16410 -11.86341 -11.80932 -11.71905 -11.09802 -10.93976 -10.88253 -10.50969 -10.48404 -10.34821 -10.20473 -9.84203 -9.36596 -9.23437 -9.00933 -8.81870 -8.64898 -8.34779 -7.69381 -5.98232 -4.02601 1.76806 2.38305 2.72375 3.32755 3.35632 3.41900 3.43721 3.80942 4.32105 4.47207 4.62301 4.79552 4.85576 5.09007 5.12712 5.20733 5.33530 5.34571 5.38552 5.55379 5.57585 5.71403 5.75031 5.79071 5.90213 6.06493 6.20848 6.23206 6.24015 6.35892 6.62299 6.64750 6.68870 6.87554 6.88634 7.00688 7.16245 7.30817 7.65102 7.66954 7.90137 8.02019 8.29153 8.43134 8.94638 9.02496 9.61472 11.09698 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.003181 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.029106 B = 8801.485870 C = 9413.232654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.383 5.383 3 C 0.049 3.951 4 C -0.267 4.267 5 C 0.083 3.917 6 C -0.023 4.023 7 C -0.131 4.131 8 C 0.506 3.494 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.110 3.890 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.038 3.962 15 H 0.036 0.964 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.877 5.877 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.118 3.882 25 N -0.295 5.295 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.043 0.957 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.658 10.950 -1.477 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.097 4.097 4 C -0.296 4.296 5 C -0.084 4.084 6 C -0.063 4.063 7 C -0.172 4.172 8 C 0.293 3.707 9 O -0.419 6.419 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.148 4.148 14 C 0.019 3.981 15 H 0.054 0.946 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.514 5.514 20 Si 0.715 3.285 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.003 4.003 25 N -0.118 5.118 26 H 0.090 0.910 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.189 0.811 30 H 0.166 0.834 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.044 10.115 -2.074 22.547 hybrid contribution 1.051 0.103 0.009 1.056 sum -18.993 10.218 -2.065 21.665 Atomic orbital electron populations 1.21806 0.74527 1.04331 1.03156 1.48517 1.06491 1.03944 1.57523 1.22499 0.91265 0.93353 1.02580 1.21490 0.97061 0.94577 1.16456 1.22455 0.93303 0.94105 0.98508 1.19790 0.91983 0.95343 0.99166 1.21607 0.97827 0.97788 0.99946 1.20469 0.87513 0.80939 0.81759 1.90695 1.43840 1.69884 1.37519 1.48463 1.23683 1.35591 1.26283 1.21538 0.90600 1.01062 0.88166 1.21882 0.98782 1.01074 0.95563 1.21621 0.95746 0.96818 1.00582 1.18966 0.91799 0.98313 0.89010 0.94620 1.21049 1.01695 1.10872 1.22554 0.92421 1.25041 0.97723 0.95242 0.95816 1.69987 1.28954 1.24150 1.28272 0.86653 0.80968 0.82456 0.78396 1.20638 1.21286 1.19915 1.22138 0.84513 0.90414 1.03210 1.77338 1.01405 1.07563 1.25470 0.90988 0.89358 0.89674 0.81112 0.83394 0.89002 0.89435 0.89408 0.89061 0.91020 0.92139 0.92264 0.92135 0.93308 0.92985 0.92757 0.93911 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.47 59.85 0.69 1.29 16 2 N -0.38 -4.02 4.01 -68.16 -0.27 -4.29 16 3 C 0.05 0.46 11.49 -17.23 -0.20 0.26 16 4 C -0.27 -3.05 10.72 -40.01 -0.43 -3.48 16 5 C 0.08 1.12 6.49 -82.40 -0.53 0.59 16 6 C -0.02 -0.34 5.08 -27.88 -0.14 -0.48 16 7 C -0.13 -1.97 4.01 -27.88 -0.11 -2.08 16 8 C 0.51 10.13 7.70 -10.98 -0.08 10.05 16 9 O -0.54 -13.09 15.39 5.56 0.09 -13.01 16 10 N -0.61 -12.28 2.98 -173.06 -0.52 -12.79 16 11 C 0.11 1.74 6.31 -3.94 -0.02 1.72 16 12 C -0.13 -2.20 6.06 -26.84 -0.16 -2.37 16 13 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 14 C 0.04 0.96 2.11 -91.68 -0.19 0.76 16 15 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 16 C -0.52 -14.35 8.48 -34.44 -0.29 -14.65 16 17 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 18 C 0.07 1.83 5.24 -17.82 -0.09 1.74 16 19 N -0.88 -26.02 12.20 55.43 0.68 -25.34 16 20 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.12 2.87 5.48 -3.73 -0.02 2.85 16 25 N -0.29 -4.06 12.55 33.67 0.42 -3.64 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 32 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.09 1.21 7.68 -51.93 -0.40 0.81 16 34 H 0.09 1.28 7.95 -51.93 -0.41 0.86 16 35 H 0.07 0.94 5.93 -51.93 -0.31 0.63 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.10 2.98 5.92 -51.93 -0.31 2.67 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -34.27 351.00 -7.96 -42.22 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.88 Total: 1.22 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -1.74 Total: -6.15 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.31 Total: -46.07 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.27 -7.96 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328371804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.349 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds