Wall clock time and date at job start Tue Mar 31 2020 07:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34942 * 126.04134 * 2 1 4 4 C 1.35316 * 107.74590 * 179.97438 * 3 2 1 5 5 C 1.39865 * 107.92284 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.89818 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46682 * 125.00571 * 6 5 4 8 8 C 1.50703 * 109.46682 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00247 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99437 * 179.97438 * 8 7 6 11 11 C 1.46921 * 120.63230 * 359.71817 * 10 8 7 12 12 C 1.52758 * 109.00832 * 233.58390 * 11 10 8 13 13 C 1.53035 * 109.38264 * 305.58878 * 12 11 10 14 14 C 1.53038 * 109.53819 * 61.24241 * 13 12 11 15 15 H 1.09000 * 109.50015 * 58.58608 * 14 13 12 16 16 C 1.50699 * 109.49625 * 178.68001 * 14 13 12 17 17 H 1.07995 * 120.00525 * 5.26033 * 16 14 13 18 18 C 1.37886 * 120.00015 * 185.26012 * 16 14 13 19 19 N 1.31516 * 119.99598 * 9.55016 * 18 16 14 20 20 Si 1.86797 * 120.00216 * 189.54649 * 18 16 14 21 21 H 1.48491 * 109.47165 * 94.99214 * 20 18 16 22 22 H 1.48500 * 109.46826 * 214.99092 * 20 18 16 23 23 H 1.48503 * 109.46927 * 334.98879 * 20 18 16 24 24 C 1.46927 * 120.62740 * 180.02562 * 10 8 7 25 25 N 1.30841 * 108.20226 * 0.26786 * 5 4 3 26 26 H 1.09000 * 109.46675 * 90.00240 * 1 2 3 27 27 H 1.09002 * 109.47550 * 210.00418 * 1 2 3 28 28 H 1.09001 * 109.46830 * 330.00434 * 1 2 3 29 29 H 1.08003 * 126.12824 * 359.96208 * 3 2 1 30 30 H 1.08003 * 126.03760 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47247 * 5.00835 * 6 5 4 32 32 H 1.09003 * 109.47094 * 245.00364 * 6 5 4 33 33 H 1.09003 * 109.47187 * 299.99736 * 7 6 5 34 34 H 1.08999 * 109.47064 * 60.00152 * 7 6 5 35 35 H 1.08998 * 109.59073 * 353.42643 * 11 10 8 36 36 H 1.09004 * 109.58580 * 113.84462 * 11 10 8 37 37 H 1.09002 * 109.56253 * 185.55511 * 12 11 10 38 38 H 1.08998 * 109.36356 * 65.50424 * 12 11 10 39 39 H 1.09006 * 109.46297 * 301.21705 * 13 12 11 40 40 H 1.09009 * 109.46080 * 181.26111 * 13 12 11 41 41 H 0.97003 * 119.99665 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.58559 * 246.15617 * 24 10 8 43 43 H 1.09005 * 109.58894 * 6.57779 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 0.0006 5 6 3.5346 -0.7323 0.0015 6 6 4.7496 -1.6238 0.0019 7 6 4.6714 -2.5919 1.1842 8 6 5.8867 -3.4830 1.1849 9 8 6.7323 -3.3560 0.3248 10 7 6.0343 -4.4204 2.1420 11 6 5.0221 -4.5814 3.1946 12 6 5.7063 -4.5065 4.5584 13 6 6.8406 -5.5322 4.6145 14 6 7.8759 -5.2100 3.5345 15 1 8.2623 -4.2027 3.6899 16 6 9.0084 -6.2013 3.6117 17 1 8.9524 -7.0328 4.2986 18 6 10.1161 -6.0467 2.8054 19 7 10.2734 -4.9423 2.1088 20 14 11.3934 -7.4058 2.7023 21 1 11.1016 -8.2716 1.5318 22 1 12.7433 -6.8058 2.5499 23 1 11.3509 -8.2202 3.9434 24 6 7.2139 -5.2963 2.1563 25 7 2.2891 -1.1329 -0.0043 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.9283 2.1193 -0.0006 30 1 4.4212 1.2961 0.0003 31 1 5.6482 -1.0134 0.0910 32 1 4.7855 -2.1895 -0.9292 33 1 4.6356 -2.0262 2.1152 34 1 3.7728 -3.2023 1.0951 35 1 4.2818 -3.7854 3.1145 36 1 4.5335 -5.5498 3.0867 37 1 4.9811 -4.7227 5.3429 38 1 6.1131 -3.5058 4.7042 39 1 6.4366 -6.5302 4.4442 40 1 7.3153 -5.4954 5.5952 41 1 11.0525 -4.8336 1.5412 42 1 6.9081 -6.3243 1.9618 43 1 7.9193 -4.9719 1.3912 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328371804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:15 Heat of formation + Delta-G solvation = 6.094682 kcal Electronic energy + Delta-G solvation = -23088.068405 eV Core-core repulsion = 19747.469481 eV Total energy + Delta-G solvation = -3340.598924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08191 -41.00013 -38.42347 -35.56347 -35.21814 -33.48601 -32.76438 -31.57730 -30.86988 -28.25671 -26.94290 -26.23360 -24.56565 -23.41572 -22.01766 -21.38069 -20.44885 -19.63812 -18.55253 -18.03049 -17.48998 -16.83760 -16.59423 -16.48769 -16.18169 -15.23257 -15.12246 -15.00225 -14.68852 -14.57905 -14.31843 -14.24042 -13.78618 -13.61228 -13.41991 -13.28481 -13.03722 -12.91927 -12.84847 -12.62229 -12.34443 -12.20900 -12.19161 -11.78997 -11.62387 -11.45228 -11.18591 -10.86595 -10.58472 -10.50798 -10.14071 -9.44992 -9.39821 -8.14556 -6.26186 0.97942 1.39334 1.41304 1.51598 1.71671 1.76432 1.82314 2.26748 2.42958 3.16683 3.50784 3.73721 3.90957 4.06382 4.14901 4.19004 4.21619 4.29116 4.38518 4.49289 4.56319 4.61603 4.69312 4.74808 4.78765 4.82842 4.86377 4.90936 5.00448 5.08743 5.10382 5.19686 5.21296 5.30384 5.34698 5.57196 5.64815 5.70944 5.89345 5.94512 6.23208 6.34037 6.68092 6.79156 6.87387 7.35136 7.42596 8.92773 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.003181 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.029106 B = 8801.485870 C = 9413.232654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.066 3.934 4 C -0.293 4.293 5 C 0.065 3.935 6 C -0.018 4.018 7 C -0.110 4.110 8 C 0.497 3.503 9 O -0.595 6.595 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.127 4.127 13 C -0.105 4.105 14 C 0.037 3.963 15 H -0.009 1.009 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.011 3.989 19 N -0.915 5.915 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.260 1.260 24 C 0.131 3.869 25 N -0.329 5.329 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.217 0.783 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.259 0.741 42 H 0.041 0.959 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.860 11.515 -0.138 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.080 4.080 4 C -0.322 4.322 5 C -0.100 4.100 6 C -0.057 4.057 7 C -0.150 4.150 8 C 0.287 3.713 9 O -0.476 6.476 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.165 4.165 13 C -0.143 4.143 14 C 0.018 3.982 15 H 0.009 0.991 16 C -0.575 4.575 17 H 0.080 0.920 18 C -0.189 4.189 19 N -0.554 5.554 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.184 1.184 24 C 0.009 3.991 25 N -0.153 5.153 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.233 0.767 30 H 0.173 0.827 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.295 10.661 -0.694 25.628 hybrid contribution 1.960 -0.020 -0.408 2.002 sum -21.335 10.641 -1.102 23.867 Atomic orbital electron populations 1.22196 0.71955 1.06028 1.04476 1.48907 1.07958 1.03390 1.56158 1.23139 0.90255 0.94864 0.99787 1.21741 0.98723 0.93842 1.17939 1.22247 0.92861 0.94870 1.00015 1.19601 0.92727 0.95218 0.98178 1.21508 0.95366 0.97045 1.01094 1.21419 0.88360 0.80880 0.80690 1.90667 1.46080 1.71259 1.39589 1.48528 1.23307 1.34880 1.27634 1.21910 0.89941 1.03635 0.86238 1.21848 0.98239 0.99162 0.97273 1.21516 0.95796 0.98610 0.98368 1.18889 0.92881 0.95245 0.91173 0.99084 1.21501 1.02584 1.11234 1.22209 0.92003 1.25890 1.00141 0.97285 0.95555 1.70156 1.29587 1.26319 1.29316 0.85607 0.78135 0.79552 0.78803 1.20331 1.21240 1.18429 1.21563 0.85467 0.90832 1.01266 1.77226 1.01710 1.09675 1.26721 0.89834 0.89457 0.86249 0.76683 0.82655 0.90048 0.91204 0.87392 0.87211 0.87377 0.90153 0.87741 0.93088 0.92376 0.93083 0.93168 0.94047 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.47 127.77 1.47 2.23 16 2 N -0.38 -6.94 4.01 -369.56 -1.48 -8.43 16 3 C 0.07 1.03 11.49 83.54 0.96 1.99 16 4 C -0.29 -6.31 10.72 21.99 0.24 -6.07 16 5 C 0.07 1.73 6.49 43.10 0.28 2.01 16 6 C -0.02 -0.52 5.08 29.85 0.15 -0.37 16 7 C -0.11 -3.23 4.01 29.85 0.12 -3.11 16 8 C 0.50 20.45 7.70 87.66 0.67 21.12 16 9 O -0.59 -30.65 15.39 -3.01 -0.05 -30.70 16 10 N -0.61 -24.90 2.98 -819.83 -2.44 -27.34 16 11 C 0.10 3.02 6.31 86.22 0.54 3.56 16 12 C -0.13 -3.81 6.06 30.53 0.19 -3.62 16 13 C -0.11 -4.13 5.11 30.62 0.16 -3.97 16 14 C 0.04 1.93 2.11 -11.48 -0.02 1.90 16 15 H -0.01 -0.54 8.09 -2.39 -0.02 -0.56 16 16 C -0.54 -30.20 8.48 25.60 0.22 -29.98 16 17 H 0.06 3.34 7.77 -2.91 -0.02 3.32 16 18 C 0.01 0.64 5.24 84.66 0.44 1.08 16 19 N -0.92 -57.20 12.20 21.45 0.26 -56.94 16 20 Si 0.95 45.21 29.55 68.60 2.03 47.24 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 24 C 0.13 6.66 5.48 86.35 0.47 7.14 16 25 N -0.33 -8.59 12.55 -47.38 -0.59 -9.19 16 26 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.22 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 32 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 33 H 0.11 2.77 7.68 -2.39 -0.02 2.75 16 34 H 0.11 2.86 7.95 -2.39 -0.02 2.84 16 35 H 0.11 2.39 5.93 -2.39 -0.01 2.38 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.05 3.34 5.92 -2.38 -0.01 3.32 16 Total: -1.00 -80.80 351.00 4.59 -76.22 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.98 Total: 15.23 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.88 Total: -6.09 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -4.26 Total: -101.89 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -80.80 4.59 -76.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328371804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.310 kcal (2) G-P(sol) polarization free energy of solvation -80.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds