Wall clock time and date at job start Tue Mar 31 2020 07:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.46300 * 113.99935 * 2 1 4 4 C 1.46847 * 111.00210 * 239.99824 * 3 2 1 5 5 C 1.53034 * 109.52619 * 185.84277 * 4 3 2 6 6 C 1.53120 * 109.27650 * 300.81806 * 5 4 3 7 7 N 1.46499 * 109.52251 * 177.55718 * 6 5 4 8 8 C 1.46499 * 120.00225 * 300.00138 * 7 6 5 9 9 C 1.38824 * 119.99844 * 120.00287 * 7 6 5 10 10 C 1.39790 * 119.58841 * 184.99960 * 9 7 6 11 11 C 1.38596 * 119.49366 * 179.97438 * 10 9 7 12 12 C 1.38378 * 118.68068 * 0.02562 * 11 10 9 13 13 C 1.40554 * 119.15179 * 359.97438 * 12 11 10 14 14 C 1.41319 * 119.78564 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00106 * 359.97438 * 14 13 12 16 16 C 1.40026 * 119.99787 * 179.97438 * 14 13 12 17 17 N 1.30739 * 120.00156 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47224 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47199 * 119.99797 * 18 16 14 21 21 H 1.48504 * 109.47136 * 239.99671 * 18 16 14 22 22 N 1.31961 * 119.58312 * 4.72704 * 9 7 6 23 23 C 1.53122 * 109.15774 * 57.65538 * 6 5 4 24 24 C 1.46844 * 111.00062 * 4.21206 * 3 2 1 25 25 H 1.08995 * 109.47157 * 60.00185 * 1 2 3 26 26 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47043 * 300.00180 * 1 2 3 28 28 H 1.09006 * 109.46027 * 65.82105 * 4 3 2 29 29 H 1.09003 * 109.45465 * 305.85368 * 4 3 2 30 30 H 1.08996 * 109.50623 * 180.88037 * 5 4 3 31 31 H 1.08999 * 109.50290 * 60.76124 * 5 4 3 32 32 H 1.08996 * 109.52320 * 297.69094 * 6 5 4 33 33 H 1.09002 * 109.47391 * 270.00005 * 8 7 6 34 34 H 1.09001 * 109.46813 * 150.00061 * 8 7 6 35 35 H 1.09004 * 109.47041 * 30.00189 * 8 7 6 36 36 H 1.08005 * 120.24845 * 359.95853 * 10 9 7 37 37 H 1.07998 * 120.65406 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.42841 * 179.97438 * 12 11 10 39 39 H 0.97005 * 119.99972 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.50287 * 62.28603 * 23 6 5 41 41 H 1.09002 * 109.50749 * 182.40236 * 23 6 5 42 42 H 1.09005 * 109.45787 * 294.17175 * 24 3 2 43 43 H 1.08993 * 109.46396 * 54.15111 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5385 -1.1872 5 6 3.5831 2.8855 -1.0820 6 6 2.5446 4.0054 -0.9722 7 7 3.2270 5.2918 -0.8126 8 6 4.1100 5.5153 0.3349 9 6 3.0369 6.2992 -1.7487 10 6 3.7716 7.4841 -1.6464 11 6 3.5806 8.4883 -2.5823 12 6 2.6611 8.2851 -3.5963 13 6 1.9532 7.0718 -3.6454 14 6 1.0114 6.8499 -4.6754 15 1 0.8372 7.6113 -5.4212 16 6 0.3040 5.6426 -4.7290 17 7 0.5151 4.7206 -3.8264 18 14 -0.9415 5.3495 -6.0900 19 1 -0.9941 6.5390 -6.9774 20 1 -0.5393 4.1587 -6.8809 21 1 -2.2815 5.1179 -5.4933 22 7 2.1689 6.1241 -2.7271 23 6 1.6518 3.7453 0.2443 24 6 0.9891 2.3734 0.1007 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.2394 1.5290 -2.0803 29 1 3.6011 0.7377 -1.2510 30 1 4.1945 3.0421 -1.9706 31 1 4.2188 2.8905 -0.1966 32 1 1.9345 4.0261 -1.8752 33 1 3.5325 5.9257 1.1632 34 1 4.8961 6.2173 0.0570 35 1 4.5582 4.5691 0.6381 36 1 4.4823 7.6160 -0.8439 37 1 4.1384 9.4111 -2.5214 38 1 2.4896 9.0488 -4.3404 39 1 0.0248 3.8844 -3.8633 40 1 2.2572 3.7639 1.1506 41 1 0.8835 4.5162 0.3034 42 1 0.3730 2.3600 -0.7985 43 1 0.3640 2.1791 0.9722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328648473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:09 Heat of formation + Delta-G solvation = 57.274765 kcal Electronic energy + Delta-G solvation = -24330.910797 eV Core-core repulsion = 20992.531208 eV Total energy + Delta-G solvation = -3338.379589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.25521 -38.15079 -36.40856 -34.43859 -33.28661 -30.84644 -30.51742 -30.16107 -28.89600 -26.79602 -25.60240 -25.35982 -22.87894 -22.44480 -21.15029 -20.04624 -18.94871 -17.49518 -17.42511 -16.22532 -15.51261 -15.19616 -14.90453 -14.78671 -14.29089 -14.12640 -13.79996 -13.58207 -13.45750 -13.09443 -12.84787 -12.77421 -12.21175 -12.04995 -11.94621 -11.78712 -11.49840 -11.28258 -11.07233 -11.01182 -10.96173 -10.61695 -10.53681 -10.42832 -10.24086 -9.95394 -9.91359 -9.46745 -8.72138 -8.44359 -7.93516 -7.51340 -6.43386 -6.40193 -4.51910 2.79604 2.81043 3.06966 3.11126 3.19445 3.24739 3.91696 3.93185 4.48545 4.77621 5.01619 5.18137 5.20258 5.30190 5.35638 5.46246 5.49854 5.57105 5.63348 5.81124 5.82306 5.87938 5.97318 6.04472 6.05392 6.13089 6.17018 6.21985 6.31898 6.51121 6.56664 6.71773 6.82094 6.86891 6.87335 7.15536 7.19399 7.24996 7.58130 7.80108 7.93044 7.99423 8.35666 8.51395 8.76051 9.07028 10.17483 10.33522 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.006528 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.056380 B = 4288.052756 C = 6160.939362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.248 6.248 3 N -0.328 5.328 4 C 0.034 3.966 5 C -0.121 4.121 6 C 0.144 3.856 7 N -0.615 5.615 8 C 0.104 3.896 9 C 0.411 3.589 10 C -0.364 4.364 11 C -0.032 4.032 12 C -0.316 4.316 13 C 0.293 3.707 14 C -0.433 4.433 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.721 5.721 18 Si 0.903 3.097 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.275 1.275 22 N -0.529 5.529 23 C -0.116 4.116 24 C 0.011 3.989 25 H 0.044 0.956 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.140 0.860 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.266 0.734 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -6.201 6.477 8.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.253 6.253 3 N -0.096 5.096 4 C -0.095 4.095 5 C -0.160 4.160 6 C 0.039 3.961 7 N -0.331 5.331 8 C -0.041 4.041 9 C 0.173 3.827 10 C -0.390 4.390 11 C -0.056 4.056 12 C -0.339 4.339 13 C 0.166 3.834 14 C -0.465 4.465 15 H 0.101 0.899 16 C -0.149 4.149 17 N -0.343 5.343 18 Si 0.727 3.273 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.250 5.250 23 C -0.156 4.156 24 C -0.118 4.118 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.521 -7.404 6.969 10.181 hybrid contribution -0.810 0.814 -1.211 1.669 sum -0.289 -6.589 5.758 8.756 Atomic orbital electron populations 1.23020 0.83634 1.02737 1.00423 1.91176 1.18351 1.19018 1.96728 1.69461 1.13114 0.90425 1.36552 1.22547 0.96832 0.98601 0.91512 1.21967 0.98878 0.92557 1.02599 1.21160 0.92795 0.81719 1.00448 1.45923 1.50239 1.12257 1.24659 1.21415 0.93682 1.00684 0.88290 1.18508 0.90178 0.85552 0.88460 1.20660 1.12619 0.98122 1.07617 1.20599 0.95368 0.96061 0.93558 1.21537 1.07323 1.01081 1.03918 1.18206 0.89571 0.86090 0.89556 1.19596 1.17301 1.00604 1.08997 0.89920 1.25991 0.97019 0.95740 0.96151 1.70084 1.31671 1.03901 1.28652 0.86349 0.80236 0.79325 0.81351 1.18413 1.19966 1.19994 1.68160 1.19742 1.31993 1.05076 1.21903 0.99925 0.93950 0.99796 1.22874 0.94857 0.92171 1.01891 0.93746 0.89407 0.93210 0.93408 0.89780 0.90540 0.91503 0.84247 0.94739 0.91738 0.92465 0.88867 0.88914 0.88750 0.92340 0.91666 0.90568 0.92755 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.98 101.05 1.01 1.01 16 2 O -0.25 -3.76 11.64 -13.92 -0.16 -3.93 16 3 N -0.33 -5.02 5.71 -113.82 -0.65 -5.67 16 4 C 0.03 0.52 5.99 -3.84 -0.02 0.50 16 5 C -0.12 -1.94 5.40 -26.65 -0.14 -2.09 16 6 C 0.14 2.65 2.62 -67.81 -0.18 2.48 16 7 N -0.61 -12.12 2.88 -173.91 -0.50 -12.62 16 8 C 0.10 1.63 9.28 59.85 0.56 2.18 16 9 C 0.41 9.79 7.38 -155.32 -1.15 8.64 16 10 C -0.36 -8.26 9.29 -38.87 -0.36 -8.63 16 11 C -0.03 -0.72 10.15 -39.40 -0.40 -1.12 16 12 C -0.32 -7.84 9.83 -38.66 -0.38 -8.22 16 13 C 0.29 7.92 6.55 -85.00 -0.56 7.36 16 14 C -0.43 -11.38 9.14 -37.74 -0.34 -11.72 16 15 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 16 C 0.08 1.85 5.50 -17.35 -0.10 1.76 16 17 N -0.72 -18.01 10.50 55.55 0.58 -17.42 16 18 Si 0.90 18.26 29.56 -169.99 -5.02 13.24 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 N -0.53 -13.95 6.37 -10.33 -0.07 -14.02 16 23 C -0.12 -1.87 5.41 -26.65 -0.14 -2.02 16 24 C 0.01 0.16 4.47 -3.83 -0.02 0.14 16 25 H 0.04 0.53 7.09 -51.93 -0.37 0.16 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.53 6.61 -51.93 -0.34 0.19 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 32 H 0.14 3.11 5.84 -51.93 -0.30 2.80 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.00 5.96 -51.93 -0.31 0.69 16 35 H 0.06 0.78 6.39 -51.93 -0.33 0.45 16 36 H 0.09 1.88 6.01 -52.48 -0.32 1.56 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 39 H 0.27 6.05 8.29 -40.82 -0.34 5.71 16 40 H 0.06 0.98 7.59 -51.93 -0.39 0.59 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 0.85 7.12 -51.93 -0.37 0.48 16 43 H 0.08 1.09 6.57 -51.93 -0.34 0.75 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -28.48 335.82 -9.33 -37.81 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.35 Total: 7.28 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.22 Total: -9.73 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.63 Total: -49.74 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.16 Total: -3.93 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.48 -9.33 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328648473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.083 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds