Wall clock time and date at job start Tue Mar 31 2020 07:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.46300 * 113.99935 * 2 1 4 4 C 1.46847 * 111.00210 * 239.99824 * 3 2 1 5 5 C 1.53034 * 109.52619 * 185.84277 * 4 3 2 6 6 C 1.53120 * 109.27650 * 300.81806 * 5 4 3 7 7 N 1.46499 * 109.52251 * 177.55718 * 6 5 4 8 8 C 1.46499 * 120.00225 * 300.00138 * 7 6 5 9 9 C 1.38824 * 119.99844 * 120.00287 * 7 6 5 10 10 C 1.39790 * 119.58841 * 184.99960 * 9 7 6 11 11 C 1.38596 * 119.49366 * 179.97438 * 10 9 7 12 12 C 1.38378 * 118.68068 * 0.02562 * 11 10 9 13 13 C 1.40554 * 119.15179 * 359.97438 * 12 11 10 14 14 C 1.41319 * 119.78564 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00106 * 359.97438 * 14 13 12 16 16 C 1.40026 * 119.99787 * 179.97438 * 14 13 12 17 17 N 1.30739 * 120.00156 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47224 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47199 * 119.99797 * 18 16 14 21 21 H 1.48504 * 109.47136 * 239.99671 * 18 16 14 22 22 N 1.31961 * 119.58312 * 4.72704 * 9 7 6 23 23 C 1.53122 * 109.15774 * 57.65538 * 6 5 4 24 24 C 1.46844 * 111.00062 * 4.21206 * 3 2 1 25 25 H 1.08995 * 109.47157 * 60.00185 * 1 2 3 26 26 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47043 * 300.00180 * 1 2 3 28 28 H 1.09006 * 109.46027 * 65.82105 * 4 3 2 29 29 H 1.09003 * 109.45465 * 305.85368 * 4 3 2 30 30 H 1.08996 * 109.50623 * 180.88037 * 5 4 3 31 31 H 1.08999 * 109.50290 * 60.76124 * 5 4 3 32 32 H 1.08996 * 109.52320 * 297.69094 * 6 5 4 33 33 H 1.09002 * 109.47391 * 270.00005 * 8 7 6 34 34 H 1.09001 * 109.46813 * 150.00061 * 8 7 6 35 35 H 1.09004 * 109.47041 * 30.00189 * 8 7 6 36 36 H 1.08005 * 120.24845 * 359.95853 * 10 9 7 37 37 H 1.07998 * 120.65406 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.42841 * 179.97438 * 12 11 10 39 39 H 0.97005 * 119.99972 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.50287 * 62.28603 * 23 6 5 41 41 H 1.09002 * 109.50749 * 182.40236 * 23 6 5 42 42 H 1.09005 * 109.45787 * 294.17175 * 24 3 2 43 43 H 1.08993 * 109.46396 * 54.15111 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8643 1.5385 -1.1872 5 6 3.5831 2.8855 -1.0820 6 6 2.5446 4.0054 -0.9722 7 7 3.2270 5.2918 -0.8126 8 6 4.1100 5.5153 0.3349 9 6 3.0369 6.2992 -1.7487 10 6 3.7716 7.4841 -1.6464 11 6 3.5806 8.4883 -2.5823 12 6 2.6611 8.2851 -3.5963 13 6 1.9532 7.0718 -3.6454 14 6 1.0114 6.8499 -4.6754 15 1 0.8372 7.6113 -5.4212 16 6 0.3040 5.6426 -4.7290 17 7 0.5151 4.7206 -3.8264 18 14 -0.9415 5.3495 -6.0900 19 1 -0.9941 6.5390 -6.9774 20 1 -0.5393 4.1587 -6.8809 21 1 -2.2815 5.1179 -5.4933 22 7 2.1689 6.1241 -2.7271 23 6 1.6518 3.7453 0.2443 24 6 0.9891 2.3734 0.1007 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.2394 1.5290 -2.0803 29 1 3.6011 0.7377 -1.2510 30 1 4.1945 3.0421 -1.9706 31 1 4.2188 2.8905 -0.1966 32 1 1.9345 4.0261 -1.8752 33 1 3.5325 5.9257 1.1632 34 1 4.8961 6.2173 0.0570 35 1 4.5582 4.5691 0.6381 36 1 4.4823 7.6160 -0.8439 37 1 4.1384 9.4111 -2.5214 38 1 2.4896 9.0488 -4.3404 39 1 0.0248 3.8844 -3.8633 40 1 2.2572 3.7639 1.1506 41 1 0.8835 4.5162 0.3034 42 1 0.3730 2.3600 -0.7985 43 1 0.3640 2.1791 0.9722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328648473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:08 Heat of formation + Delta-G solvation = 41.423132 kcal Electronic energy + Delta-G solvation = -24331.598175 eV Core-core repulsion = 20992.531208 eV Total energy + Delta-G solvation = -3339.066968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70209 -39.72176 -37.79466 -35.93430 -34.99860 -32.33783 -32.10846 -31.67241 -30.48108 -27.90614 -27.27075 -26.89307 -24.24304 -23.85202 -22.91005 -21.64891 -20.33574 -19.28610 -18.63974 -17.87544 -16.73358 -16.58385 -16.52749 -16.16323 -16.00762 -15.52180 -15.22521 -15.05708 -14.85794 -14.56231 -14.17812 -14.06354 -13.80847 -13.75162 -13.24460 -13.10946 -12.89547 -12.70829 -12.69116 -12.50605 -12.31302 -12.26939 -12.09219 -11.77921 -11.72396 -11.47822 -11.33551 -11.22076 -10.43594 -9.78874 -9.64038 -9.35910 -8.23902 -8.10719 -6.45825 1.05292 1.35822 1.39675 1.52899 1.54935 1.64045 2.22944 2.42664 2.92149 3.33413 3.78003 3.86378 4.02102 4.07811 4.16634 4.22847 4.26472 4.35591 4.41254 4.47023 4.49663 4.58916 4.69445 4.71294 4.76931 4.78262 4.81436 4.88565 4.95121 4.97429 5.02083 5.07316 5.12618 5.19813 5.34018 5.55740 5.61692 5.78118 5.99399 6.11464 6.14518 6.18727 6.65589 6.71475 6.91491 7.22106 8.33996 8.49812 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.006528 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.056380 B = 4288.052756 C = 6160.939362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.261 6.261 3 N -0.330 5.330 4 C 0.040 3.960 5 C -0.108 4.108 6 C 0.139 3.861 7 N -0.615 5.615 8 C 0.099 3.901 9 C 0.393 3.607 10 C -0.367 4.367 11 C -0.031 4.031 12 C -0.346 4.346 13 C 0.260 3.740 14 C -0.469 4.469 15 H 0.082 0.918 16 C 0.033 3.967 17 N -0.743 5.743 18 Si 0.977 3.023 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.267 1.267 22 N -0.553 5.553 23 C -0.105 4.105 24 C 0.018 3.982 25 H 0.037 0.963 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.028 0.972 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.272 0.728 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -7.184 7.886 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.266 6.266 3 N -0.097 5.097 4 C -0.089 4.089 5 C -0.147 4.147 6 C 0.034 3.966 7 N -0.330 5.330 8 C -0.043 4.043 9 C 0.153 3.847 10 C -0.392 4.392 11 C -0.055 4.055 12 C -0.369 4.369 13 C 0.133 3.867 14 C -0.501 4.501 15 H 0.100 0.900 16 C -0.189 4.189 17 N -0.365 5.365 18 Si 0.798 3.202 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.192 1.192 22 N -0.275 5.275 23 C -0.144 4.144 24 C -0.111 4.111 25 H 0.056 0.944 26 H 0.131 0.869 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.777 -8.394 8.419 11.914 hybrid contribution -0.832 1.089 -1.540 2.061 sum -0.055 -7.305 6.879 10.034 Atomic orbital electron populations 1.23229 0.81874 1.04516 1.00644 1.91141 1.20321 1.18361 1.96810 1.69405 1.13409 0.90821 1.36052 1.22482 0.96923 0.98573 0.90964 1.21808 0.98195 0.91995 1.02712 1.21120 0.93422 0.82070 0.99945 1.46165 1.50470 1.11698 1.24699 1.21644 0.93309 1.02340 0.87036 1.18982 0.89888 0.87076 0.88717 1.21029 1.12542 0.97559 1.08109 1.20990 0.94592 0.97368 0.92526 1.21679 1.08776 1.00976 1.05434 1.18660 0.90486 0.87243 0.90345 1.19877 1.18730 1.01820 1.09670 0.90016 1.26789 0.98614 0.94992 0.98508 1.70187 1.32277 1.04204 1.29868 0.85233 0.77608 0.79153 0.78166 1.18149 1.19355 1.19236 1.68161 1.21048 1.32359 1.05934 1.21746 0.99195 0.94235 0.99243 1.22822 0.94701 0.91430 1.02149 0.94449 0.86890 0.91988 0.95311 0.88341 0.92024 0.89563 0.88209 0.93564 0.91321 0.89958 0.86012 0.85530 0.88350 0.91801 0.89893 0.92322 0.94305 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.11 9.98 113.37 1.13 1.03 16 2 O -0.26 -7.42 11.64 -50.16 -0.58 -8.00 16 3 N -0.33 -9.55 5.71 -514.01 -2.94 -12.48 16 4 C 0.04 1.19 5.99 86.32 0.52 1.70 16 5 C -0.11 -3.38 5.40 30.65 0.17 -3.21 16 6 C 0.14 5.13 2.62 45.07 0.12 5.25 16 7 N -0.61 -23.84 2.88 -704.11 -2.03 -25.86 16 8 C 0.10 2.87 9.28 127.77 1.19 4.06 16 9 C 0.39 18.83 7.38 133.41 0.98 19.81 16 10 C -0.37 -16.30 9.29 22.73 0.21 -16.09 16 11 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 12 C -0.35 -17.63 9.83 22.87 0.22 -17.41 16 13 C 0.26 14.61 6.55 40.18 0.26 14.88 16 14 C -0.47 -25.71 9.14 23.46 0.21 -25.49 16 15 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 16 C 0.03 1.66 5.50 85.29 0.47 2.13 16 17 N -0.74 -38.50 10.50 21.84 0.23 -38.27 16 18 Si 0.98 38.25 29.56 68.60 2.03 40.28 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 22 N -0.55 -30.18 6.37 -186.58 -1.19 -31.37 16 23 C -0.10 -3.28 5.41 30.65 0.17 -3.11 16 24 C 0.02 0.50 4.47 86.33 0.39 0.89 16 25 H 0.04 0.85 7.09 -2.39 -0.02 0.84 16 26 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.18 6.61 -2.39 -0.02 1.16 16 28 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 2.35 6.58 -2.39 -0.02 2.34 16 32 H 0.10 4.61 5.84 -2.39 -0.01 4.59 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.93 5.96 -2.39 -0.01 1.92 16 35 H 0.08 1.97 6.39 -2.38 -0.02 1.95 16 36 H 0.12 4.60 6.01 -2.91 -0.02 4.58 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 38 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.27 12.79 8.29 -92.70 -0.77 12.02 16 40 H 0.08 2.29 7.59 -2.39 -0.02 2.27 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.22 7.12 -2.38 -0.02 1.21 16 43 H 0.11 2.53 6.57 -2.39 -0.02 2.51 16 Total: -1.00 -63.44 335.82 2.79 -60.65 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 1.01 Total: 31.77 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 6.26 Total: -16.72 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.92 Total: -107.98 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.58 Total: -8.00 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -63.44 2.79 -60.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328648473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.071 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds