Wall clock time and date at job start Tue Mar 31 2020 07:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35039 * 126.39794 * 2 1 4 4 N 1.30504 * 108.70033 * 179.97438 * 3 2 1 5 5 C 1.34121 * 109.25569 * 0.02562 * 4 3 2 6 6 C 1.34666 * 108.02399 * 359.97438 * 5 4 3 7 7 C 1.50705 * 126.59579 * 180.02562 * 6 5 4 8 8 C 1.52991 * 109.46988 * 84.97451 * 7 6 5 9 9 C 1.50706 * 109.47019 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99657 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00183 * 180.02562 * 9 8 7 12 12 C 1.46922 * 120.63013 * 359.71622 * 11 9 8 13 13 C 1.53625 * 108.54368 * 126.36861 * 12 11 9 14 14 C 1.53037 * 109.23756 * 54.85940 * 13 12 11 15 15 C 1.53040 * 109.53919 * 298.50535 * 14 13 12 16 16 H 1.09003 * 109.49975 * 301.42211 * 15 14 13 17 17 C 1.50699 * 109.52506 * 181.33528 * 15 14 13 18 18 H 1.07997 * 120.00330 * 0.14659 * 17 15 14 19 19 C 1.37877 * 119.99759 * 180.14925 * 17 15 14 20 20 N 1.31517 * 120.00388 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99868 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47035 * 60.00209 * 21 19 17 23 23 H 1.48502 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47082 * 299.99962 * 21 19 17 25 25 C 1.46922 * 120.62993 * 179.97438 * 11 9 8 26 26 H 1.08995 * 109.47138 * 89.97558 * 1 2 3 27 27 H 1.08998 * 109.47531 * 209.97547 * 1 2 3 28 28 H 1.09002 * 109.47372 * 329.97371 * 1 2 3 29 29 H 1.08003 * 125.65338 * 0.02562 * 3 2 1 30 30 H 1.08001 * 125.99017 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.46991 * 204.97549 * 7 6 5 32 32 H 1.09003 * 109.46542 * 324.97547 * 7 6 5 33 33 H 1.09007 * 109.47672 * 299.99799 * 8 7 6 34 34 H 1.08995 * 109.47595 * 60.00343 * 8 7 6 35 35 H 1.09004 * 109.59140 * 246.20630 * 12 11 9 36 36 H 1.09005 * 109.58967 * 6.62674 * 12 11 9 37 37 H 1.08997 * 109.63266 * 294.86465 * 13 12 11 38 38 H 1.09002 * 109.43010 * 174.72582 * 13 12 11 39 39 H 1.09008 * 109.45539 * 178.49245 * 14 13 12 40 40 H 1.09001 * 109.46663 * 58.53148 * 14 13 12 41 41 H 0.97001 * 120.00174 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.58855 * 353.37379 * 25 11 9 43 43 H 1.09006 * 109.58750 * 113.80001 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 0.0006 5 6 3.5460 -0.6505 0.0004 6 6 2.2772 -1.1018 0.0002 7 6 1.8363 -2.5429 0.0005 8 6 1.8076 -3.0671 1.4376 9 6 1.3672 -4.5084 1.4378 10 8 1.1020 -5.0616 0.3916 11 7 1.2672 -5.1823 2.6007 12 6 1.5900 -4.5273 3.8756 13 6 0.3948 -4.6932 4.8265 14 6 0.0534 -6.1797 4.9527 15 6 -0.3422 -6.7322 3.5815 16 1 -1.1961 -6.1743 3.1970 17 6 -0.7099 -8.1878 3.7120 18 1 -0.6682 -8.6709 4.6770 19 6 -1.0993 -8.9029 2.5994 20 7 -1.1495 -8.3149 1.4241 21 14 -1.5557 -10.7071 2.7613 22 1 -2.7013 -10.8460 3.6960 23 1 -1.9364 -11.2428 1.4296 24 1 -0.3930 -11.4666 3.2869 25 6 0.8387 -6.5876 2.6171 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3634 0.8897 0.5142 29 1 1.9334 2.1144 0.0004 30 1 4.4368 -1.2612 0.0003 31 1 0.8393 -2.6179 -0.4335 32 1 2.5349 -3.1367 -0.5890 33 1 2.8047 -2.9922 1.8717 34 1 1.1091 -2.4734 2.0271 35 1 2.4745 -4.9918 4.3115 36 1 1.7782 -3.4673 3.7046 37 1 -0.4659 -4.1545 4.4302 38 1 0.6539 -4.2948 5.8074 39 1 -0.7772 -6.3037 5.6476 40 1 0.9226 -6.7216 5.3256 41 1 -1.4238 -8.8179 0.6413 42 1 0.5311 -6.8875 1.6153 43 1 1.6631 -7.2171 2.9522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329008285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:02 Heat of formation + Delta-G solvation = 11.718653 kcal Electronic energy + Delta-G solvation = -23444.844738 eV Core-core repulsion = 20104.489687 eV Total energy + Delta-G solvation = -3340.355051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17422 -39.47287 -36.81336 -34.30150 -33.65418 -33.24263 -31.77079 -29.92433 -28.78481 -27.12840 -25.45214 -24.95820 -23.32454 -21.83027 -21.51053 -20.03421 -19.57621 -18.17096 -17.27102 -16.62078 -16.02118 -15.85917 -15.44735 -15.04591 -14.56138 -14.42045 -13.81321 -13.71143 -13.46114 -13.28023 -13.16642 -12.95504 -12.71131 -12.64601 -12.42503 -12.02874 -11.91441 -11.83614 -11.12535 -11.00589 -10.91498 -10.54975 -10.42047 -10.25797 -10.01471 -9.91443 -9.68273 -9.31509 -9.13643 -8.90693 -8.45280 -8.38148 -7.75300 -6.01849 -4.10808 1.92357 2.66294 3.08540 3.23447 3.30391 3.36344 3.37530 3.73357 4.40784 4.51855 4.56559 4.61411 4.88812 4.96991 5.07036 5.13466 5.19351 5.27869 5.30129 5.39086 5.46464 5.56627 5.63513 5.65064 5.84888 5.98009 6.09836 6.14378 6.27948 6.34428 6.56928 6.64735 6.67392 6.83011 6.94697 7.07589 7.13135 7.27628 7.62017 7.84936 7.98019 7.98240 8.25102 8.36954 8.85715 8.94030 9.54923 11.03294 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.003452 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.339362 B = 8108.447265 C = 8544.773884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.459 5.459 3 C 0.172 3.828 4 N -0.495 5.495 5 C -0.029 4.029 6 C -0.015 4.015 7 C -0.029 4.029 8 C -0.133 4.133 9 C 0.504 3.496 10 O -0.539 6.539 11 N -0.607 5.607 12 C 0.108 3.892 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.027 0.973 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.112 3.888 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.202 0.798 30 H 0.169 0.831 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.123 0.877 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 16.436 0.686 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.142 5.142 3 C -0.110 4.110 4 N -0.213 5.213 5 C -0.176 4.176 6 C -0.130 4.130 7 C -0.068 4.068 8 C -0.173 4.173 9 C 0.291 3.709 10 O -0.417 6.417 11 N -0.339 5.339 12 C -0.016 4.016 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.022 3.978 16 H 0.045 0.955 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.008 4.008 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.219 0.781 30 H 0.186 0.814 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.445 16.611 -0.072 17.196 hybrid contribution -1.054 -1.381 0.238 1.753 sum 3.391 15.230 0.166 15.604 Atomic orbital electron populations 1.22078 0.76602 1.04891 1.03836 1.45336 1.07640 1.06783 1.54475 1.24874 0.85747 0.93370 1.06992 1.70256 1.19425 1.12122 1.19506 1.22075 0.95834 0.91000 1.08734 1.21403 0.91234 0.89905 1.10428 1.19773 1.03413 0.87057 0.96527 1.21666 1.03248 0.94427 0.97981 1.20415 0.78403 0.88059 0.84065 1.90714 1.50036 1.69995 1.30969 1.48522 1.65720 1.14712 1.04971 1.21736 0.97711 0.96876 0.85264 1.22016 0.97786 0.99407 0.97946 1.21629 1.00124 0.92668 1.00451 1.18947 0.93492 0.96072 0.89307 0.95455 1.21046 1.45942 0.94822 0.94300 0.92438 1.25050 0.95155 0.98366 0.95418 1.69874 1.46734 1.36317 0.98879 0.86651 0.78921 0.85204 0.77189 1.20305 1.21240 1.20227 1.22273 0.96304 0.75984 1.06283 0.90379 0.89283 0.89387 0.78105 0.81418 0.90405 0.88645 0.89024 0.89830 0.91968 0.91145 0.92259 0.92287 0.93063 0.93164 0.92600 0.85922 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.82 59.84 0.65 1.12 16 2 N -0.46 -4.69 3.15 -121.37 -0.38 -5.07 16 3 C 0.17 1.79 12.56 -90.37 -1.14 0.65 16 4 N -0.50 -6.60 11.25 -14.67 -0.17 -6.76 16 5 C -0.03 -0.37 11.79 -17.82 -0.21 -0.58 16 6 C -0.01 -0.18 6.21 -81.60 -0.51 -0.69 16 7 C -0.03 -0.36 4.69 -27.88 -0.13 -0.50 16 8 C -0.13 -1.75 4.03 -27.88 -0.11 -1.86 16 9 C 0.50 9.42 7.70 -10.98 -0.08 9.34 16 10 O -0.54 -12.45 15.39 5.56 0.09 -12.36 16 11 N -0.61 -11.66 2.97 -172.52 -0.51 -12.17 16 12 C 0.11 1.61 6.37 -3.49 -0.02 1.58 16 13 C -0.13 -2.07 6.10 -26.39 -0.16 -2.23 16 14 C -0.11 -2.16 5.11 -26.69 -0.14 -2.29 16 15 C 0.04 0.99 2.25 -91.67 -0.21 0.79 16 16 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.52 -14.00 8.57 -34.44 -0.30 -14.30 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.39 11.39 55.43 0.63 -24.75 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.11 2.65 5.40 -3.73 -0.02 2.63 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.66 7.68 -51.93 -0.40 0.26 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.08 1.04 7.59 -51.93 -0.39 0.64 16 32 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.09 1.06 7.93 -51.92 -0.41 0.65 16 34 H 0.08 0.99 7.70 -51.93 -0.40 0.59 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.12 3.42 5.12 -51.93 -0.27 3.16 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -33.23 347.40 -9.39 -42.61 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.79 Total: 1.90 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.47 Total: -4.68 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.43 Total: -48.76 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.23 -9.39 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329008285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.332 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds