Wall clock time and date at job start Tue Mar 31 2020 07:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35042 * 126.39396 * 2 1 4 4 N 1.30503 * 108.69591 * 180.27047 * 3 2 1 5 5 C 1.34122 * 109.25705 * 359.77073 * 4 3 2 6 6 C 1.34669 * 108.02376 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.59198 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47285 * 85.02296 * 7 6 5 9 9 C 1.50698 * 109.47245 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99620 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00102 * 179.97438 * 9 8 7 12 12 C 1.46927 * 120.62805 * 359.97438 * 11 9 8 13 13 C 1.53193 * 108.77663 * 233.63128 * 12 11 9 14 14 C 1.53046 * 109.31028 * 305.36644 * 13 12 11 15 15 C 1.53046 * 109.53579 * 61.36644 * 14 13 12 16 16 H 1.09004 * 109.49895 * 58.58445 * 15 14 13 17 17 C 1.50700 * 109.49417 * 178.68258 * 15 14 13 18 18 H 1.08000 * 120.00079 * 359.97438 * 17 15 14 19 19 C 1.37880 * 119.99902 * 179.97438 * 17 15 14 20 20 N 1.31514 * 119.99723 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00135 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47098 * 59.99729 * 21 19 17 23 23 H 1.48497 * 109.47271 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46995 * 300.00032 * 21 19 17 25 25 C 1.46919 * 120.63015 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.47020 * 270.10980 * 1 2 3 27 27 H 1.08997 * 109.47885 * 30.11369 * 1 2 3 28 28 H 1.09002 * 109.47408 * 150.11701 * 1 2 3 29 29 H 1.07997 * 125.65650 * 0.02562 * 3 2 1 30 30 H 1.08000 * 125.99137 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47182 * 325.02043 * 7 6 5 32 32 H 1.09004 * 109.46592 * 205.02181 * 7 6 5 33 33 H 1.09000 * 109.47218 * 59.99769 * 8 7 6 34 34 H 1.08997 * 109.46878 * 300.00106 * 8 7 6 35 35 H 1.09000 * 109.58699 * 353.41886 * 12 11 9 36 36 H 1.08997 * 109.58189 * 113.70088 * 12 11 9 37 37 H 1.09001 * 109.49998 * 185.42005 * 13 12 11 38 38 H 1.08998 * 109.50010 * 65.31705 * 13 12 11 39 39 H 1.08993 * 109.46296 * 301.34732 * 14 13 12 40 40 H 1.09000 * 109.45696 * 181.38288 * 14 13 12 41 41 H 0.97003 * 119.99618 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.59216 * 6.57787 * 25 11 9 43 43 H 1.09006 * 109.58250 * 246.15682 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6903 -0.0058 5 6 3.5460 -0.6504 -0.0047 6 6 2.2772 -1.1018 0.0016 7 6 1.8364 -2.5429 0.0045 8 6 1.8137 -3.0664 1.4419 9 6 1.3722 -4.5072 1.4449 10 8 1.1028 -5.0610 0.4000 11 7 1.2778 -5.1807 2.6085 12 6 1.6024 -4.5239 3.8821 13 6 2.6406 -5.3718 4.6237 14 6 2.1150 -6.8017 4.7699 15 6 1.8955 -7.4107 3.3831 16 1 2.8344 -7.4024 2.8293 17 6 1.4088 -8.8295 3.5281 18 1 1.2701 -9.2551 4.5110 19 6 1.1405 -9.5844 2.4060 20 7 1.3098 -9.0664 1.2091 21 14 0.5378 -11.3434 2.5857 22 1 -0.7417 -11.3537 3.3393 23 1 0.3250 -11.9336 1.2398 24 1 1.5518 -12.1413 3.3208 25 6 0.8495 -6.5860 2.6274 26 1 -0.3633 0.0020 1.0277 27 1 -0.3635 0.8889 -0.5156 28 1 -0.3634 -0.8910 -0.5120 29 1 1.9334 2.1144 0.0004 30 1 4.4368 -1.2611 -0.0089 31 1 2.5325 -3.1370 -0.5876 32 1 0.8376 -2.6181 -0.4254 33 1 1.1175 -2.4723 2.0340 34 1 2.8124 -2.9910 1.8718 35 1 2.0117 -3.5324 3.6880 36 1 0.7004 -4.4348 4.4874 37 1 2.8188 -4.9470 5.6115 38 1 3.5724 -5.3828 4.0583 39 1 1.1706 -6.7877 5.3139 40 1 2.8412 -7.4011 5.3189 41 1 1.1214 -9.5976 0.4196 42 1 0.7618 -6.9552 1.6056 43 1 -0.1136 -6.6676 3.1314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329008286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:06 Heat of formation + Delta-G solvation = 12.172978 kcal Electronic energy + Delta-G solvation = -23409.166668 eV Core-core repulsion = 20068.831318 eV Total energy + Delta-G solvation = -3340.335350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17864 -39.47308 -36.81429 -34.31081 -33.65790 -33.23701 -31.76480 -29.92969 -28.78394 -27.15517 -25.44969 -24.95186 -23.32942 -21.81553 -21.51231 -20.03250 -19.56766 -18.16343 -17.28309 -16.62547 -16.01077 -15.87154 -15.45146 -15.02800 -14.56249 -14.42846 -13.88808 -13.70025 -13.50171 -13.20892 -13.12754 -12.94691 -12.72431 -12.67632 -12.45359 -12.03419 -11.88312 -11.83513 -11.10660 -10.99666 -10.90402 -10.53830 -10.40098 -10.24529 -10.01778 -9.90277 -9.69572 -9.30932 -9.12189 -8.89735 -8.44125 -8.38135 -7.75068 -6.00508 -4.09444 1.91965 2.64541 3.08880 3.23328 3.31125 3.37042 3.38236 3.73758 4.41780 4.48236 4.56578 4.60679 4.83659 4.96107 5.03978 5.12582 5.18470 5.28425 5.30333 5.40956 5.48328 5.56067 5.65676 5.66444 5.83794 5.98800 6.10177 6.16256 6.29828 6.34674 6.59243 6.65933 6.67694 6.84008 6.96272 7.06964 7.13764 7.28015 7.63258 7.86458 7.98271 7.99334 8.25420 8.38145 8.86046 8.95238 9.56142 11.04682 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.003410 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.464059 B = 8208.786665 C = 8699.750018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.460 5.460 3 C 0.171 3.829 4 N -0.494 5.494 5 C -0.027 4.027 6 C -0.015 4.015 7 C -0.028 4.028 8 C -0.132 4.132 9 C 0.504 3.496 10 O -0.540 6.540 11 N -0.606 5.606 12 C 0.109 3.891 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.112 3.888 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.202 0.798 30 H 0.169 0.831 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.123 0.877 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 18.294 1.123 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.175 4.175 6 C -0.130 4.130 7 C -0.067 4.067 8 C -0.173 4.173 9 C 0.291 3.709 10 O -0.417 6.417 11 N -0.339 5.339 12 C -0.015 4.015 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.008 4.008 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.219 0.781 30 H 0.187 0.813 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.539 18.463 0.357 18.530 hybrid contribution -1.108 -1.363 0.267 1.777 sum -2.647 17.100 0.624 17.315 Atomic orbital electron populations 1.22062 0.76740 1.04797 1.03745 1.45326 1.07574 1.06804 1.54633 1.24876 0.85757 0.93342 1.07065 1.70260 1.19402 1.12147 1.19415 1.22104 0.95904 0.90966 1.08538 1.21399 0.91253 0.89879 1.10469 1.19776 1.03271 0.87078 0.96586 1.21656 1.03376 0.94310 0.97931 1.20415 0.78452 0.88044 0.84006 1.90714 1.50173 1.69865 1.30991 1.48523 1.65837 1.14462 1.05097 1.21635 0.98351 0.95630 0.85896 1.21947 0.98514 0.97733 0.99047 1.21628 0.99562 0.93221 1.00434 1.18953 0.95358 0.93515 0.90053 0.95320 1.21046 1.45836 0.96616 0.92609 0.92451 1.25052 0.95289 0.98282 0.95387 1.69879 1.47731 1.36714 0.97429 0.86653 0.79285 0.84861 0.77170 1.20276 1.21245 1.20282 1.22265 0.96724 0.75560 1.06256 0.90435 0.89473 0.89338 0.78114 0.81340 0.88540 0.90568 0.89972 0.88881 0.91149 0.92170 0.92247 0.92069 0.93247 0.93022 0.92601 0.85953 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 11.00 59.85 0.66 1.09 16 2 N -0.46 -4.58 3.15 -121.37 -0.38 -4.96 16 3 C 0.17 1.77 12.56 -90.37 -1.14 0.63 16 4 N -0.49 -6.63 11.25 -14.67 -0.17 -6.80 16 5 C -0.03 -0.36 11.79 -17.82 -0.21 -0.57 16 6 C -0.02 -0.18 6.21 -81.60 -0.51 -0.69 16 7 C -0.03 -0.36 4.84 -27.89 -0.13 -0.49 16 8 C -0.13 -1.74 4.03 -27.89 -0.11 -1.86 16 9 C 0.50 9.44 7.70 -10.99 -0.08 9.36 16 10 O -0.54 -12.46 15.40 5.55 0.09 -12.37 16 11 N -0.61 -11.68 2.97 -172.80 -0.51 -12.19 16 12 C 0.11 1.62 6.34 -3.71 -0.02 1.60 16 13 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 14 C -0.11 -2.17 5.11 -26.68 -0.14 -2.30 16 15 C 0.04 0.98 2.25 -91.67 -0.21 0.78 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.06 8.56 -34.44 -0.29 -14.35 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.50 11.40 55.43 0.63 -24.87 16 21 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.11 2.67 5.40 -3.74 -0.02 2.65 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.58 7.11 -51.93 -0.37 0.21 16 29 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.08 0.97 7.04 -51.93 -0.37 0.61 16 33 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.09 1.14 7.69 -51.93 -0.40 0.74 16 35 H 0.07 0.84 5.93 -51.93 -0.31 0.54 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.12 3.42 5.13 -51.93 -0.27 3.15 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -33.43 346.60 -9.34 -42.77 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.73 Total: 1.88 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.46 Total: -4.80 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.43 Total: -48.82 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.43 -9.34 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329008286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.940 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds