Wall clock time and date at job start Tue Mar 31 2020 07:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35042 * 126.39396 * 2 1 4 4 N 1.30503 * 108.69591 * 180.27047 * 3 2 1 5 5 C 1.34122 * 109.25705 * 359.77073 * 4 3 2 6 6 C 1.34669 * 108.02376 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.59198 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47285 * 85.02296 * 7 6 5 9 9 C 1.50698 * 109.47245 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99620 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00102 * 179.97438 * 9 8 7 12 12 C 1.46927 * 120.62805 * 359.97438 * 11 9 8 13 13 C 1.53193 * 108.77663 * 233.63128 * 12 11 9 14 14 C 1.53046 * 109.31028 * 305.36644 * 13 12 11 15 15 C 1.53046 * 109.53579 * 61.36644 * 14 13 12 16 16 H 1.09004 * 109.49895 * 58.58445 * 15 14 13 17 17 C 1.50700 * 109.49417 * 178.68258 * 15 14 13 18 18 H 1.08000 * 120.00079 * 359.97438 * 17 15 14 19 19 C 1.37880 * 119.99902 * 179.97438 * 17 15 14 20 20 N 1.31514 * 119.99723 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00135 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47098 * 59.99729 * 21 19 17 23 23 H 1.48497 * 109.47271 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46995 * 300.00032 * 21 19 17 25 25 C 1.46919 * 120.63015 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.47020 * 270.10980 * 1 2 3 27 27 H 1.08997 * 109.47885 * 30.11369 * 1 2 3 28 28 H 1.09002 * 109.47408 * 150.11701 * 1 2 3 29 29 H 1.07997 * 125.65650 * 0.02562 * 3 2 1 30 30 H 1.08000 * 125.99137 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47182 * 325.02043 * 7 6 5 32 32 H 1.09004 * 109.46592 * 205.02181 * 7 6 5 33 33 H 1.09000 * 109.47218 * 59.99769 * 8 7 6 34 34 H 1.08997 * 109.46878 * 300.00106 * 8 7 6 35 35 H 1.09000 * 109.58699 * 353.41886 * 12 11 9 36 36 H 1.08997 * 109.58189 * 113.70088 * 12 11 9 37 37 H 1.09001 * 109.49998 * 185.42005 * 13 12 11 38 38 H 1.08998 * 109.50010 * 65.31705 * 13 12 11 39 39 H 1.08993 * 109.46296 * 301.34732 * 14 13 12 40 40 H 1.09000 * 109.45696 * 181.38288 * 14 13 12 41 41 H 0.97003 * 119.99618 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.59216 * 6.57787 * 25 11 9 43 43 H 1.09006 * 109.58250 * 246.15682 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6903 -0.0058 5 6 3.5460 -0.6504 -0.0047 6 6 2.2772 -1.1018 0.0016 7 6 1.8364 -2.5429 0.0045 8 6 1.8137 -3.0664 1.4419 9 6 1.3722 -4.5072 1.4449 10 8 1.1028 -5.0610 0.4000 11 7 1.2778 -5.1807 2.6085 12 6 1.6024 -4.5239 3.8821 13 6 2.6406 -5.3718 4.6237 14 6 2.1150 -6.8017 4.7699 15 6 1.8955 -7.4107 3.3831 16 1 2.8344 -7.4024 2.8293 17 6 1.4088 -8.8295 3.5281 18 1 1.2701 -9.2551 4.5110 19 6 1.1405 -9.5844 2.4060 20 7 1.3098 -9.0664 1.2091 21 14 0.5378 -11.3434 2.5857 22 1 -0.7417 -11.3537 3.3393 23 1 0.3250 -11.9336 1.2398 24 1 1.5518 -12.1413 3.3208 25 6 0.8495 -6.5860 2.6274 26 1 -0.3633 0.0020 1.0277 27 1 -0.3635 0.8889 -0.5156 28 1 -0.3634 -0.8910 -0.5120 29 1 1.9334 2.1144 0.0004 30 1 4.4368 -1.2611 -0.0089 31 1 2.5325 -3.1370 -0.5876 32 1 0.8376 -2.6181 -0.4254 33 1 1.1175 -2.4723 2.0340 34 1 2.8124 -2.9910 1.8718 35 1 2.0117 -3.5324 3.6880 36 1 0.7004 -4.4348 4.4874 37 1 2.8188 -4.9470 5.6115 38 1 3.5724 -5.3828 4.0583 39 1 1.1706 -6.7877 5.3139 40 1 2.8412 -7.4011 5.3189 41 1 1.1214 -9.5976 0.4196 42 1 0.7618 -6.9552 1.6056 43 1 -0.1136 -6.6676 3.1314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329008286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:05 Heat of formation + Delta-G solvation = -7.522723 kcal Electronic energy + Delta-G solvation = -23410.020737 eV Core-core repulsion = 20068.831318 eV Total energy + Delta-G solvation = -3341.189419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.00236 -40.99001 -38.40663 -35.38667 -35.11229 -34.45944 -33.40740 -31.59657 -29.86801 -27.75931 -27.16772 -26.46270 -24.67453 -23.39263 -22.32356 -21.40207 -20.68328 -19.64516 -18.58204 -18.07822 -17.47675 -16.88295 -16.70673 -16.50389 -16.24740 -15.45588 -15.23154 -15.02073 -14.61658 -14.51006 -14.32684 -14.16230 -13.83437 -13.76317 -13.55560 -13.42054 -13.35147 -12.98004 -12.85349 -12.65150 -12.29015 -12.24024 -12.13322 -11.78970 -11.62616 -11.10903 -10.94203 -10.90555 -10.61174 -10.49393 -10.44621 -9.37580 -9.28441 -8.11005 -6.28130 1.08745 1.40508 1.41712 1.50149 1.77311 1.94473 2.19377 2.31555 2.42930 3.16987 3.51419 3.90267 3.95632 3.97584 4.00797 4.07388 4.17402 4.20151 4.36398 4.44254 4.49853 4.53341 4.61746 4.69370 4.73973 4.78689 4.83598 4.90511 4.95312 5.08040 5.11258 5.26407 5.29755 5.37635 5.47051 5.55612 5.66108 5.79550 5.91227 6.01272 6.33632 6.35590 6.72292 6.84698 7.15077 7.37434 7.42704 8.92024 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.003410 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.464059 B = 8208.786665 C = 8699.750018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.458 5.458 3 C 0.183 3.817 4 N -0.535 5.535 5 C -0.046 4.046 6 C -0.022 4.022 7 C -0.019 4.019 8 C -0.113 4.113 9 C 0.495 3.505 10 O -0.594 6.594 11 N -0.612 5.612 12 C 0.104 3.896 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.038 3.962 16 H -0.015 1.015 17 C -0.539 4.539 18 H 0.061 0.939 19 C 0.010 3.990 20 N -0.914 5.914 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.269 1.269 25 C 0.126 3.874 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.241 0.759 30 H 0.169 0.831 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 20.742 3.161 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.140 5.140 3 C -0.099 4.099 4 N -0.253 5.253 5 C -0.193 4.193 6 C -0.137 4.137 7 C -0.058 4.058 8 C -0.153 4.153 9 C 0.285 3.715 10 O -0.476 6.476 11 N -0.344 5.344 12 C -0.018 4.018 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.019 3.981 16 H 0.003 0.997 17 C -0.577 4.577 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.553 5.553 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.194 1.194 25 C 0.003 3.997 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.100 0.900 29 H 0.257 0.743 30 H 0.186 0.814 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.334 20.934 2.445 21.205 hybrid contribution -0.871 -2.083 -0.376 2.288 sum -3.205 18.852 2.069 19.234 Atomic orbital electron populations 1.22361 0.74453 1.05981 1.05119 1.45524 1.08921 1.05963 1.53638 1.25633 0.84990 0.94774 1.04520 1.70244 1.21438 1.12271 1.21383 1.22258 0.96516 0.91336 1.09209 1.21110 0.91362 0.89794 1.11449 1.19567 1.02537 0.87614 0.96051 1.21587 1.04700 0.90097 0.98901 1.21427 0.77151 0.90020 0.82890 1.90689 1.52391 1.71513 1.32958 1.48561 1.65607 1.12853 1.07332 1.21997 0.99247 0.96763 0.83776 1.21921 0.97984 0.95262 1.01443 1.21519 1.00162 0.95720 0.96954 1.18889 0.93210 0.93347 0.92652 0.99657 1.21510 1.45276 0.98245 0.92671 0.92109 1.25889 0.95579 1.02438 0.95045 1.70082 1.49097 1.38046 0.98069 0.85629 0.79170 0.79949 0.77038 1.19168 1.21445 1.19419 1.21635 0.96318 0.78607 1.03143 0.88914 0.86607 0.89971 0.74293 0.81395 0.90562 0.90940 0.86806 0.87176 0.87112 0.90209 0.87905 0.93036 0.92514 0.93217 0.93159 0.90617 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 11.00 127.77 1.41 1.98 16 2 N -0.46 -7.86 3.15 -537.90 -1.70 -9.56 16 3 C 0.18 3.23 12.56 180.26 2.26 5.50 16 4 N -0.53 -13.51 11.25 -200.32 -2.25 -15.76 16 5 C -0.05 -1.15 11.79 83.52 0.98 -0.16 16 6 C -0.02 -0.49 6.21 40.95 0.25 -0.23 16 7 C -0.02 -0.46 4.84 29.85 0.14 -0.32 16 8 C -0.11 -2.76 4.03 29.85 0.12 -2.64 16 9 C 0.50 18.65 7.70 87.66 0.67 19.32 16 10 O -0.59 -28.81 15.40 -3.05 -0.05 -28.86 16 11 N -0.61 -23.36 2.97 -819.00 -2.43 -25.79 16 12 C 0.10 2.76 6.34 86.36 0.55 3.30 16 13 C -0.13 -3.65 6.08 30.67 0.19 -3.47 16 14 C -0.11 -4.04 5.11 30.63 0.16 -3.88 16 15 C 0.04 1.92 2.25 -11.47 -0.03 1.90 16 16 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 17 C -0.54 -29.74 8.56 25.60 0.22 -29.52 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 19 C 0.01 0.56 5.30 84.66 0.45 1.01 16 20 N -0.91 -55.72 11.40 21.45 0.24 -55.47 16 21 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.13 6.19 5.40 86.35 0.47 6.65 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 0.90 7.11 -2.39 -0.02 0.88 16 29 H 0.24 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 32 H 0.07 1.84 7.04 -2.39 -0.02 1.82 16 33 H 0.11 2.12 7.94 -2.39 -0.02 2.10 16 34 H 0.11 2.39 7.69 -2.39 -0.02 2.37 16 35 H 0.11 2.10 5.93 -2.39 -0.01 2.08 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.08 4.50 5.13 -2.39 -0.01 4.49 16 43 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -78.74 346.60 4.68 -74.06 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.99 Total: 15.63 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 7.85 Total: -0.56 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -6.14 Total: -106.58 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -78.74 4.68 -74.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329008286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.537 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds