Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34950 * 126.03818 * 2 1 4 4 C 1.35315 * 107.74509 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03592 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47508 * 89.99923 * 5 4 3 7 7 C 1.50703 * 109.47421 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99719 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00168 * 179.97438 * 7 6 5 10 10 C 1.46931 * 120.63110 * 359.72701 * 9 7 6 11 11 C 1.53189 * 108.77500 * 233.87818 * 10 9 7 12 12 C 1.53044 * 109.31437 * 305.36603 * 11 10 9 13 13 C 1.53039 * 109.53736 * 61.36390 * 12 11 10 14 14 H 1.09005 * 109.49914 * 58.58775 * 13 12 11 15 15 C 1.50703 * 109.49712 * 178.68606 * 13 12 11 16 16 H 1.07999 * 119.99830 * 5.25667 * 15 13 12 17 17 C 1.37874 * 120.00085 * 185.26475 * 15 13 12 18 18 N 1.31519 * 120.00194 * 9.53932 * 17 15 13 19 19 Si 1.86800 * 120.00140 * 189.54396 * 17 15 13 20 20 H 1.48501 * 109.47206 * 94.98355 * 19 17 15 21 21 H 1.48498 * 109.47435 * 214.98635 * 19 17 15 22 22 H 1.48504 * 109.47101 * 334.98826 * 19 17 15 23 23 C 1.46925 * 120.63233 * 179.97438 * 9 7 6 24 24 C 1.39870 * 107.92356 * 0.26143 * 4 3 2 25 25 N 1.30836 * 108.19774 * 359.55800 * 24 4 3 26 26 H 1.08995 * 109.47199 * 89.99796 * 1 2 3 27 27 H 1.09004 * 109.47335 * 209.99469 * 1 2 3 28 28 H 1.09002 * 109.47470 * 329.99655 * 1 2 3 29 29 H 1.07995 * 126.12510 * 0.04411 * 3 2 1 30 30 H 1.08995 * 109.47313 * 329.99301 * 5 4 3 31 31 H 1.09002 * 109.46893 * 209.99774 * 5 4 3 32 32 H 1.09002 * 109.47080 * 59.99679 * 6 5 4 33 33 H 1.09002 * 109.46921 * 299.99833 * 6 5 4 34 34 H 1.09000 * 109.58463 * 353.66839 * 10 9 7 35 35 H 1.08998 * 109.58573 * 114.09078 * 10 9 7 36 36 H 1.08991 * 109.49837 * 185.41358 * 11 10 9 37 37 H 1.09003 * 109.49652 * 65.31177 * 11 10 9 38 38 H 1.08994 * 109.46015 * 301.34493 * 12 11 10 39 39 H 1.08998 * 109.44890 * 181.37729 * 12 11 10 40 40 H 0.96996 * 119.99691 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.59094 * 245.91339 * 23 9 7 42 42 H 1.09002 * 109.58630 * 6.33476 * 23 9 7 43 43 H 1.07996 * 125.89842 * 179.73764 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7679 1.5453 -0.0002 6 6 5.1826 1.8418 1.4423 7 6 6.4073 2.7201 1.4426 8 8 6.8996 3.0744 0.3923 9 7 6.9547 3.1126 2.6099 10 6 6.3655 2.6973 3.8902 11 6 6.0957 3.9453 4.7366 12 6 7.3878 4.7541 4.8722 13 6 7.8587 5.2026 3.4869 14 1 7.0800 5.8011 3.0140 15 6 9.1134 6.0260 3.6242 16 1 9.5808 6.1407 4.5910 17 6 9.6643 6.6332 2.5158 18 7 9.0020 6.6535 1.3797 19 14 11.3516 7.4269 2.6274 20 1 12.3840 6.4611 2.1727 21 1 11.3888 8.6344 1.7638 22 1 11.6235 7.8160 4.0345 23 6 8.1490 3.9683 2.6263 24 6 3.5346 -0.7321 -0.0070 25 7 2.2891 -1.1327 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9281 2.1193 0.0007 30 1 4.5441 2.4805 -0.5135 31 1 5.5820 1.0345 -0.5146 32 1 5.4065 0.9066 1.9555 33 1 4.3686 2.3526 1.9566 34 1 5.4292 2.1701 3.7076 35 1 7.0596 2.0420 4.4164 36 1 5.7483 3.6461 5.7254 37 1 5.3337 4.5557 4.2520 38 1 8.1568 4.1351 5.3343 39 1 7.2042 5.6299 5.4945 40 1 9.3898 7.0803 0.5998 41 1 8.9882 3.4165 3.0496 42 1 8.3893 4.2798 1.6098 43 1 4.4054 -1.3710 -0.0130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330906855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = 27.407111 kcal Electronic energy + Delta-G solvation = -23088.578358 eV Core-core repulsion = 19748.903610 eV Total energy + Delta-G solvation = -3339.674748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29311 -39.39233 -36.74920 -34.29872 -33.33813 -32.56891 -31.69614 -30.03537 -29.30465 -27.09494 -25.11715 -24.81243 -23.06458 -21.79756 -21.19836 -20.22563 -19.53616 -18.09073 -17.09191 -16.50972 -15.95541 -15.62009 -15.18496 -14.99398 -14.53618 -14.49617 -13.79182 -13.65378 -13.32728 -13.22551 -13.06420 -12.71208 -12.61209 -12.57482 -12.24663 -11.87876 -11.83910 -11.69419 -11.00434 -10.95478 -10.89921 -10.54136 -10.47538 -10.37279 -10.22885 -9.86522 -9.54069 -9.29947 -9.03832 -8.87204 -8.39993 -8.36708 -7.70966 -6.00182 -4.04613 1.76271 2.38328 2.70207 3.31448 3.34445 3.40499 3.42239 3.81935 4.34055 4.45571 4.73497 4.85238 4.93963 5.03218 5.10220 5.26309 5.29357 5.31931 5.40733 5.51388 5.52792 5.66118 5.70806 5.81172 5.84427 6.04181 6.20307 6.32947 6.32986 6.36695 6.58567 6.62378 6.66293 6.86220 6.87969 6.98360 7.14329 7.29007 7.57425 7.64885 7.87914 7.99938 8.28087 8.41184 8.94106 9.00717 9.59631 11.07717 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.003162 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.183286 B = 8851.753159 C = 9332.538431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.054 3.946 4 C -0.228 4.228 5 C -0.025 4.025 6 C -0.131 4.131 7 C 0.503 3.497 8 O -0.542 6.542 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.039 3.961 14 H 0.035 0.965 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.877 5.877 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.118 3.882 24 C 0.053 3.947 25 N -0.303 5.303 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.173 0.827 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.042 0.958 42 H 0.104 0.896 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.532 -12.470 0.848 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.164 5.164 3 C -0.091 4.091 4 C -0.240 4.240 5 C -0.064 4.064 6 C -0.172 4.172 7 C 0.291 3.709 8 O -0.419 6.419 9 N -0.342 5.342 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.019 3.981 14 H 0.053 0.947 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.514 5.514 19 Si 0.715 3.285 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.003 4.003 24 C -0.133 4.133 25 N -0.124 5.124 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.191 0.809 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.122 0.878 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.217 -13.219 0.100 20.922 hybrid contribution 1.367 1.187 0.161 1.818 sum -14.850 -12.031 0.261 19.114 Atomic orbital electron populations 1.21816 0.74455 1.04358 1.03211 1.48434 1.06500 1.03945 1.57513 1.22389 0.90945 0.93332 1.02476 1.20215 0.94644 0.94004 1.15100 1.19609 0.93225 0.98359 0.95233 1.21683 0.96632 0.99884 0.98982 1.20585 0.85297 0.81175 0.83883 1.90698 1.63533 1.56840 1.30874 1.48488 1.30452 1.50527 1.04687 1.21623 0.97724 0.96674 0.85345 1.21954 0.99837 0.97000 0.98472 1.21622 0.94580 0.98136 1.00457 1.18980 0.97163 0.92264 0.89647 0.94666 1.21051 1.09816 1.30947 0.94380 0.92424 1.25035 0.97425 0.95652 0.95689 1.69985 1.36633 1.43410 1.01358 0.86657 0.85021 0.78882 0.77934 1.20622 1.21287 1.19911 1.22145 0.83083 0.90221 1.04850 1.23844 0.95078 0.94758 0.99642 1.77318 1.01807 1.08369 1.24938 0.90935 0.89471 0.89525 0.80940 0.90623 0.90436 0.89637 0.89691 0.91006 0.92135 0.92317 0.92165 0.93303 0.93006 0.92760 0.93934 0.87764 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.84 0.69 1.29 16 2 N -0.38 -3.95 4.01 -68.17 -0.27 -4.23 16 3 C 0.05 0.56 11.40 -17.22 -0.20 0.36 16 4 C -0.23 -2.67 5.35 -105.05 -0.56 -3.23 16 5 C -0.03 -0.33 4.99 -27.88 -0.14 -0.47 16 6 C -0.13 -1.78 4.03 -27.88 -0.11 -1.90 16 7 C 0.50 9.67 7.70 -10.99 -0.08 9.58 16 8 O -0.54 -12.82 15.39 5.55 0.09 -12.73 16 9 N -0.61 -11.89 2.97 -172.74 -0.51 -12.40 16 10 C 0.11 1.66 6.34 -3.71 -0.02 1.64 16 11 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 12 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16 13 C 0.04 0.95 2.12 -91.63 -0.19 0.76 16 14 H 0.04 0.98 8.09 -51.93 -0.42 0.56 16 15 C -0.52 -14.21 8.48 -34.44 -0.29 -14.50 16 16 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 17 C 0.07 1.82 5.24 -17.82 -0.09 1.73 16 18 N -0.88 -25.80 12.21 55.43 0.68 -25.12 16 19 Si 0.89 21.34 29.55 -169.99 -5.02 16.31 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.12 2.81 5.49 -3.69 -0.02 2.79 16 24 C 0.05 0.62 11.96 -17.37 -0.21 0.41 16 25 N -0.30 -3.79 12.58 30.62 0.39 -3.41 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 34 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.10 2.93 5.92 -51.93 -0.31 2.62 16 43 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -33.96 351.03 -7.79 -41.76 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.88 Total: 0.68 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.54 Total: -6.14 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.27 Total: -45.16 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.96 -7.79 -41.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330906855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.162 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds