Wall clock time and date at job start Tue Mar 31 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34950 * 126.03818 * 2 1 4 4 C 1.35315 * 107.74509 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03592 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47508 * 89.99923 * 5 4 3 7 7 C 1.50703 * 109.47421 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99719 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00168 * 179.97438 * 7 6 5 10 10 C 1.46931 * 120.63110 * 359.72701 * 9 7 6 11 11 C 1.53189 * 108.77500 * 233.87818 * 10 9 7 12 12 C 1.53044 * 109.31437 * 305.36603 * 11 10 9 13 13 C 1.53039 * 109.53736 * 61.36390 * 12 11 10 14 14 H 1.09005 * 109.49914 * 58.58775 * 13 12 11 15 15 C 1.50703 * 109.49712 * 178.68606 * 13 12 11 16 16 H 1.07999 * 119.99830 * 5.25667 * 15 13 12 17 17 C 1.37874 * 120.00085 * 185.26475 * 15 13 12 18 18 N 1.31519 * 120.00194 * 9.53932 * 17 15 13 19 19 Si 1.86800 * 120.00140 * 189.54396 * 17 15 13 20 20 H 1.48501 * 109.47206 * 94.98355 * 19 17 15 21 21 H 1.48498 * 109.47435 * 214.98635 * 19 17 15 22 22 H 1.48504 * 109.47101 * 334.98826 * 19 17 15 23 23 C 1.46925 * 120.63233 * 179.97438 * 9 7 6 24 24 C 1.39870 * 107.92356 * 0.26143 * 4 3 2 25 25 N 1.30836 * 108.19774 * 359.55800 * 24 4 3 26 26 H 1.08995 * 109.47199 * 89.99796 * 1 2 3 27 27 H 1.09004 * 109.47335 * 209.99469 * 1 2 3 28 28 H 1.09002 * 109.47470 * 329.99655 * 1 2 3 29 29 H 1.07995 * 126.12510 * 0.04411 * 3 2 1 30 30 H 1.08995 * 109.47313 * 329.99301 * 5 4 3 31 31 H 1.09002 * 109.46893 * 209.99774 * 5 4 3 32 32 H 1.09002 * 109.47080 * 59.99679 * 6 5 4 33 33 H 1.09002 * 109.46921 * 299.99833 * 6 5 4 34 34 H 1.09000 * 109.58463 * 353.66839 * 10 9 7 35 35 H 1.08998 * 109.58573 * 114.09078 * 10 9 7 36 36 H 1.08991 * 109.49837 * 185.41358 * 11 10 9 37 37 H 1.09003 * 109.49652 * 65.31177 * 11 10 9 38 38 H 1.08994 * 109.46015 * 301.34493 * 12 11 10 39 39 H 1.08998 * 109.44890 * 181.37729 * 12 11 10 40 40 H 0.96996 * 119.99691 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.59094 * 245.91339 * 23 9 7 42 42 H 1.09002 * 109.58630 * 6.33476 * 23 9 7 43 43 H 1.07996 * 125.89842 * 179.73764 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7679 1.5453 -0.0002 6 6 5.1826 1.8418 1.4423 7 6 6.4073 2.7201 1.4426 8 8 6.8996 3.0744 0.3923 9 7 6.9547 3.1126 2.6099 10 6 6.3655 2.6973 3.8902 11 6 6.0957 3.9453 4.7366 12 6 7.3878 4.7541 4.8722 13 6 7.8587 5.2026 3.4869 14 1 7.0800 5.8011 3.0140 15 6 9.1134 6.0260 3.6242 16 1 9.5808 6.1407 4.5910 17 6 9.6643 6.6332 2.5158 18 7 9.0020 6.6535 1.3797 19 14 11.3516 7.4269 2.6274 20 1 12.3840 6.4611 2.1727 21 1 11.3888 8.6344 1.7638 22 1 11.6235 7.8160 4.0345 23 6 8.1490 3.9683 2.6263 24 6 3.5346 -0.7321 -0.0070 25 7 2.2891 -1.1327 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9281 2.1193 0.0007 30 1 4.5441 2.4805 -0.5135 31 1 5.5820 1.0345 -0.5146 32 1 5.4065 0.9066 1.9555 33 1 4.3686 2.3526 1.9566 34 1 5.4292 2.1701 3.7076 35 1 7.0596 2.0420 4.4164 36 1 5.7483 3.6461 5.7254 37 1 5.3337 4.5557 4.2520 38 1 8.1568 4.1351 5.3343 39 1 7.2042 5.6299 5.4945 40 1 9.3898 7.0803 0.5998 41 1 8.9882 3.4165 3.0496 42 1 8.3893 4.2798 1.6098 43 1 4.4054 -1.3710 -0.0130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330906855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:26 Heat of formation + Delta-G solvation = 5.855814 kcal Electronic energy + Delta-G solvation = -23089.512892 eV Core-core repulsion = 19748.903610 eV Total energy + Delta-G solvation = -3340.609282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09919 -40.92378 -38.35713 -35.37681 -35.10407 -33.55550 -33.26202 -31.64840 -30.33838 -27.96609 -26.93412 -26.17187 -24.33109 -23.37993 -21.95601 -21.40263 -20.87088 -19.58850 -18.52772 -17.98672 -17.32197 -16.69705 -16.56448 -16.39836 -16.17279 -15.29391 -15.21370 -14.97486 -14.69557 -14.45482 -14.26705 -13.96759 -13.73353 -13.60816 -13.48172 -13.34624 -13.02519 -12.88312 -12.80211 -12.59927 -12.31380 -12.19094 -11.99883 -11.76728 -11.60352 -11.41524 -11.15916 -10.84491 -10.51909 -10.49312 -10.31957 -9.34760 -9.25674 -8.14193 -6.25605 0.98320 1.39449 1.41465 1.51551 1.74077 1.82422 1.85462 2.34155 2.44221 3.17277 3.63794 3.82393 4.04121 4.10093 4.21887 4.27608 4.29705 4.37285 4.42234 4.47836 4.60951 4.63499 4.72320 4.73703 4.80106 4.82341 4.87374 4.91748 4.99971 5.11969 5.23478 5.30619 5.33411 5.36959 5.39645 5.58763 5.68460 5.74822 5.91477 5.95854 6.18318 6.35448 6.75814 6.77264 6.88160 7.41915 7.45170 8.92972 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028101 B = 0.003162 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.183286 B = 8851.753159 C = 9332.538431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.062 3.938 4 C -0.246 4.246 5 C -0.015 4.015 6 C -0.113 4.113 7 C 0.493 3.507 8 O -0.599 6.599 9 N -0.614 5.614 10 C 0.105 3.895 11 C -0.127 4.127 12 C -0.106 4.106 13 C 0.038 3.962 14 H -0.009 1.009 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.012 3.988 18 N -0.915 5.915 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.261 1.261 23 C 0.131 3.869 24 C 0.046 3.954 25 N -0.334 5.334 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.200 0.800 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.259 0.741 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 -13.768 2.942 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.085 4.085 4 C -0.257 4.257 5 C -0.054 4.054 6 C -0.153 4.153 7 C 0.283 3.717 8 O -0.480 6.480 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.165 4.165 12 C -0.144 4.144 13 C 0.019 3.981 14 H 0.009 0.991 15 C -0.576 4.576 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.554 5.554 19 Si 0.778 3.222 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.185 1.185 23 C 0.008 3.992 24 C -0.139 4.139 25 N -0.156 5.156 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.216 0.784 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -17.970 -14.547 2.246 23.229 hybrid contribution 1.833 1.609 -0.494 2.488 sum -16.137 -12.938 1.752 20.757 Atomic orbital electron populations 1.22175 0.72108 1.05938 1.04450 1.48794 1.07885 1.03351 1.56346 1.22797 0.90576 0.94453 1.00684 1.20054 0.94535 0.93834 1.17279 1.19403 0.93616 0.97720 0.94697 1.21666 0.93974 0.99754 0.99924 1.21684 0.86291 0.80924 0.82788 1.90673 1.65396 1.58995 1.32955 1.48557 1.29341 1.49675 1.06966 1.22005 0.99833 0.96857 0.82988 1.21921 0.97152 0.96469 1.00982 1.21519 0.97055 0.98922 0.96877 1.18899 0.94968 0.91786 0.92483 0.99112 1.21512 1.10761 1.30908 0.94371 0.92108 1.25867 1.01028 0.96537 0.95364 1.70151 1.38363 1.44769 1.02068 0.85632 0.80387 0.77799 0.78421 1.20323 1.21273 1.18485 1.21538 0.85189 0.90880 1.01555 1.24116 0.95459 0.95023 0.99269 1.77274 1.02347 1.09807 1.26146 0.89857 0.89066 0.86842 0.78355 0.92310 0.91940 0.86802 0.87255 0.86835 0.90279 0.87887 0.93008 0.92489 0.93273 0.93200 0.94202 0.92840 0.78747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.47 127.77 1.47 2.30 16 2 N -0.38 -6.97 4.01 -369.58 -1.48 -8.45 16 3 C 0.06 1.11 11.40 83.54 0.95 2.07 16 4 C -0.25 -5.31 5.35 -20.14 -0.11 -5.42 16 5 C -0.02 -0.39 4.99 29.85 0.15 -0.24 16 6 C -0.11 -2.83 4.03 29.85 0.12 -2.71 16 7 C 0.49 18.99 7.70 87.66 0.67 19.67 16 8 O -0.60 -29.80 15.39 -3.05 -0.05 -29.85 16 9 N -0.61 -23.69 2.97 -818.83 -2.43 -26.12 16 10 C 0.10 2.79 6.34 86.36 0.55 3.34 16 11 C -0.13 -3.60 6.08 30.67 0.19 -3.41 16 12 C -0.11 -4.05 5.11 30.62 0.16 -3.90 16 13 C 0.04 1.92 2.12 -11.45 -0.02 1.89 16 14 H -0.01 -0.55 8.09 -2.38 -0.02 -0.57 16 15 C -0.54 -29.86 8.48 25.60 0.22 -29.65 16 16 H 0.06 3.26 7.77 -2.91 -0.02 3.23 16 17 C 0.01 0.67 5.24 84.65 0.44 1.11 16 18 N -0.92 -56.57 12.21 21.45 0.26 -56.31 16 19 Si 0.95 44.77 29.55 68.60 2.03 46.79 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.13 6.49 5.49 86.38 0.47 6.97 16 24 C 0.05 1.01 11.96 85.24 1.02 2.03 16 25 N -0.33 -7.79 12.58 -57.03 -0.72 -8.51 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.11 2.26 7.95 -2.39 -0.02 2.24 16 33 H 0.11 2.25 7.68 -2.39 -0.02 2.23 16 34 H 0.11 2.13 5.93 -2.39 -0.01 2.12 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.05 3.20 5.92 -2.39 -0.01 3.18 16 43 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -79.77 351.03 4.87 -74.90 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.98 Total: 13.49 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 6.27 Total: -5.94 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -4.37 Total: -99.39 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.05 Total: -29.85 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -79.77 4.87 -74.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330906855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.758 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds