Wall clock time and date at job start Tue Mar 31 2020 07:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21285 * 120.00148 * 2 1 4 4 N 1.34778 * 119.99937 * 180.02562 * 2 1 3 5 5 C 1.46601 * 125.30641 * 359.97438 * 4 2 1 6 6 C 1.54095 * 107.07968 * 197.87716 * 5 4 2 7 7 H 1.08996 * 112.41087 * 96.37941 * 6 5 4 8 8 C 1.54152 * 108.92677 * 223.00037 * 6 5 4 9 9 N 1.47836 * 107.25353 * 110.78480 * 8 6 5 10 10 C 1.46892 * 110.99709 * 214.49592 * 9 8 6 11 11 C 1.53002 * 109.47026 * 190.00318 * 10 9 8 12 12 H 1.09002 * 109.47405 * 55.00085 * 11 10 9 13 13 C 1.47198 * 109.47011 * 294.99823 * 11 10 9 14 14 N 6.70620 * 131.99727 * 229.57483 * 2 1 3 15 15 C 1.53005 * 109.47168 * 175.00245 * 11 10 9 16 16 C 1.50700 * 109.47023 * 184.99615 * 15 11 10 17 17 H 1.07999 * 119.99906 * 0.02562 * 16 15 11 18 18 C 1.37879 * 119.99954 * 179.97438 * 16 15 11 19 19 N 1.31519 * 119.99956 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00040 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46828 * 60.00236 * 20 18 16 22 22 H 1.48502 * 109.46996 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46945 * 300.00357 * 20 18 16 24 24 C 1.50382 * 106.03492 * 334.99460 * 9 8 6 25 25 C 1.54581 * 102.33306 * 39.34164 * 24 9 8 26 26 H 1.09002 * 112.63767 * 84.10747 * 25 24 9 27 27 C 1.46579 * 125.30183 * 179.97438 * 4 2 1 28 28 H 1.09005 * 109.46899 * 239.99687 * 1 2 3 29 29 H 1.08996 * 109.47134 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47349 * 120.00030 * 1 2 3 31 31 H 1.09000 * 109.91617 * 317.24065 * 5 4 2 32 32 H 1.09007 * 109.91112 * 78.32526 * 5 4 2 33 33 H 1.09000 * 109.88084 * 230.19521 * 8 6 5 34 34 H 1.08992 * 109.88079 * 351.21201 * 8 6 5 35 35 H 1.09004 * 109.47314 * 310.00009 * 10 9 8 36 36 H 1.08997 * 109.47196 * 70.00527 * 10 9 8 37 37 H 1.09005 * 109.46875 * 304.99784 * 15 11 10 38 38 H 1.08996 * 109.46980 * 64.99959 * 15 11 10 39 39 H 0.96997 * 119.99468 * 179.97438 * 19 18 16 40 40 H 1.08998 * 110.74636 * 281.34977 * 24 9 8 41 41 H 1.09002 * 111.40837 * 157.62768 * 24 9 8 42 42 H 1.09004 * 109.72902 * 58.30226 * 27 4 2 43 43 H 1.08994 * 109.73916 * 297.69137 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5684 -2.4992 -0.0006 6 6 2.6531 -3.4961 0.4509 7 1 2.5936 -3.7209 1.5158 8 6 2.5854 -4.7486 -0.4452 9 7 3.8035 -4.7548 -1.2828 10 6 3.5236 -5.3073 -2.6148 11 6 4.8403 -5.5300 -3.3616 12 1 5.4975 -6.1579 -2.7600 13 6 5.4906 -4.2325 -3.6070 14 7 5.9940 -3.2318 -3.7940 15 6 4.5583 -6.2200 -4.6978 16 6 5.8622 -6.5498 -5.3777 17 1 6.7982 -6.2933 -4.9040 18 6 5.8600 -7.1799 -6.6041 19 7 4.7201 -7.4926 -7.1808 20 14 7.4762 -7.5893 -7.4467 21 1 8.2709 -8.4955 -6.5792 22 1 7.2026 -8.2589 -8.7436 23 1 8.2398 -6.3386 -7.6871 24 6 4.2484 -3.3216 -1.3797 25 6 3.9822 -2.7959 0.0494 26 1 4.7998 -3.0151 0.7361 27 6 3.6403 -1.3027 -0.0011 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.7299 -2.5223 0.6955 32 1 1.2244 -2.7496 -1.0042 33 1 2.5560 -5.6457 0.1732 34 1 1.6983 -4.7047 -1.0770 35 1 2.9994 -6.2574 -2.5113 36 1 2.9020 -4.6086 -3.1747 37 1 3.9980 -7.1382 -4.5215 38 1 3.9748 -5.5547 -5.3342 39 1 4.7187 -7.9355 -8.0437 40 1 3.6459 -2.7787 -2.1080 41 1 5.3080 -3.2496 -1.6251 42 1 4.0569 -0.8001 0.8718 43 1 4.0506 -0.8618 -0.9096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333070019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:45 Heat of formation + Delta-G solvation = -26.479280 kcal Electronic energy + Delta-G solvation = -23344.214171 eV Core-core repulsion = 20002.202734 eV Total energy + Delta-G solvation = -3342.011437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75306 -40.04075 -38.47063 -36.61491 -35.61675 -34.06466 -32.52456 -31.64783 -30.34445 -28.41788 -27.23752 -25.84823 -23.90621 -23.38037 -22.16836 -20.87016 -20.42506 -18.53181 -18.34333 -18.18847 -17.41919 -16.76797 -16.46011 -16.21920 -16.03905 -15.55259 -15.05092 -14.91485 -14.53487 -14.32906 -14.07395 -13.92834 -13.80742 -13.66100 -13.55885 -13.46971 -13.08606 -13.02973 -12.95396 -12.82671 -12.48497 -12.33729 -12.21669 -12.06772 -11.92246 -11.72313 -11.62635 -11.37321 -11.12898 -11.04546 -10.55209 -9.80146 -9.38651 -8.20138 -6.28058 1.40416 1.42051 1.48989 1.51360 1.95345 1.97375 1.98673 2.40872 2.88968 3.15092 3.18621 3.26864 3.46924 3.61119 3.84747 4.06225 4.09160 4.15705 4.28533 4.36536 4.38686 4.44579 4.53241 4.58648 4.62537 4.63530 4.67919 4.77554 4.88979 4.92490 4.97127 4.99060 5.03061 5.08713 5.26001 5.31594 5.46508 5.61758 5.78190 5.81982 6.01880 6.21413 6.43861 6.76137 6.86940 7.03807 7.40436 8.90504 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.003216 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.190860 B = 8704.511719 C = 8895.735275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.511 3.489 3 O -0.606 6.606 4 N -0.616 5.616 5 C 0.098 3.902 6 C -0.092 4.092 7 H 0.132 0.868 8 C 0.042 3.958 9 N -0.518 5.518 10 C 0.064 3.936 11 C 0.019 3.981 12 H 0.122 0.878 13 C 0.256 3.744 14 N -0.511 5.511 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.035 3.965 25 C -0.090 4.090 26 H 0.118 0.882 27 C 0.111 3.889 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.035 0.965 37 H 0.040 0.960 38 H -0.003 1.003 39 H 0.264 0.736 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.299 3.973 19.669 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.303 3.697 3 O -0.488 6.488 4 N -0.349 5.349 5 C -0.024 4.024 6 C -0.111 4.111 7 H 0.150 0.850 8 C -0.085 4.085 9 N -0.241 5.241 10 C -0.065 4.065 11 C -0.003 4.003 12 H 0.140 0.860 13 C -0.059 4.059 14 N -0.189 5.189 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.209 1.209 24 C -0.092 4.092 25 C -0.110 4.110 26 H 0.136 0.864 27 C -0.013 4.013 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.963 5.659 19.447 23.031 hybrid contribution 0.519 0.208 -1.684 1.774 sum -10.444 5.867 17.764 21.426 Atomic orbital electron populations 1.21922 0.87312 1.06166 1.06430 1.21480 0.92361 0.81301 0.74524 1.90705 1.72383 1.32771 1.52907 1.48438 1.06972 1.07064 1.72443 1.22533 0.97288 0.79947 1.02588 1.23015 0.92085 0.93791 1.02219 0.84973 1.23059 0.91191 0.98833 0.95417 1.65296 1.30650 1.15922 1.12280 1.22296 0.94034 1.01954 0.88235 1.19254 0.96452 0.85318 0.99307 0.85989 1.29614 0.92052 0.94319 0.89920 1.81034 1.11335 1.14484 1.12039 1.18975 0.96026 0.95430 0.89446 1.21529 0.93641 1.38322 1.04382 0.92975 1.25686 0.99138 0.95755 0.98041 1.70015 1.26786 1.42115 1.17301 0.85785 0.80516 0.78305 0.78199 1.18655 1.20645 1.20922 1.23702 1.00333 0.89076 0.96133 1.22719 0.99909 0.91722 0.96610 0.86428 1.21584 0.81686 0.97071 1.00952 0.86293 0.89133 0.87656 0.86830 0.91373 0.87356 0.91861 0.86362 0.94681 0.94162 0.98418 0.92682 0.95443 0.91677 0.91356 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.36 71.23 0.67 -1.18 16 2 C 0.51 11.67 7.94 87.65 0.70 12.37 16 3 O -0.61 -20.41 17.39 -3.05 -0.05 -20.47 16 4 N -0.62 -12.23 3.31 -818.69 -2.71 -14.94 16 5 C 0.10 1.16 5.96 86.73 0.52 1.68 16 6 C -0.09 -1.09 4.13 -9.17 -0.04 -1.13 16 7 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 8 C 0.04 0.58 6.23 86.51 0.54 1.12 16 9 N -0.52 -11.49 5.26 -878.41 -4.62 -16.12 16 10 C 0.06 1.68 4.38 86.31 0.38 2.05 16 11 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 12 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 13 C 0.26 10.34 10.87 89.44 0.97 11.31 16 14 N -0.51 -22.50 17.64 20.00 0.35 -22.15 16 15 C 0.04 1.81 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.52 8.60 25.60 0.22 -28.30 16 17 H 0.05 2.74 7.59 -2.91 -0.02 2.71 16 18 C 0.01 0.70 5.46 84.65 0.46 1.17 16 19 N -0.92 -52.53 13.29 21.45 0.28 -52.24 16 20 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 C 0.04 0.91 4.15 86.16 0.36 1.27 16 25 C -0.09 -1.69 3.96 -9.30 -0.04 -1.73 16 26 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 27 C 0.11 2.52 6.27 86.45 0.54 3.07 16 28 H 0.12 0.64 7.87 -2.38 -0.02 0.62 16 29 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.58 7.62 -2.39 -0.02 0.56 16 32 H 0.07 0.87 7.24 -2.38 -0.02 0.85 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 0.78 6.81 -2.39 -0.02 0.76 16 35 H 0.12 2.58 8.08 -2.38 -0.02 2.56 16 36 H 0.03 0.97 7.86 -2.39 -0.02 0.95 16 37 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.03 0.82 7.62 -2.39 -0.02 0.80 16 41 H 0.06 2.05 5.75 -2.39 -0.01 2.03 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.04 1.12 7.75 -2.39 -0.02 1.10 16 Total: -1.00 -73.27 347.66 1.65 -71.62 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 0.99 Total: 4.66 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.38 Total: 4.27 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -6.69 Total: -105.45 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.27 1.65 -71.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333070019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.139 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds