Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47022 * 2 1 4 4 N 1.39928 * 125.75552 * 270.02368 * 3 2 1 5 5 C 1.30445 * 108.90111 * 179.73102 * 4 3 2 6 6 C 1.41298 * 108.01848 * 0.38073 * 5 4 3 7 7 C 1.47432 * 126.41186 * 179.87554 * 6 5 4 8 8 O 1.21605 * 119.99973 * 244.68693 * 7 6 5 9 9 N 1.34781 * 119.99860 * 64.69287 * 7 6 5 10 10 C 1.46508 * 119.99707 * 5.15438 * 9 7 6 11 11 C 1.46494 * 120.00147 * 184.87723 * 9 7 6 12 12 H 1.09000 * 109.46916 * 0.27734 * 11 9 7 13 13 C 1.52998 * 109.46896 * 120.27579 * 11 9 7 14 14 C 1.50698 * 109.47130 * 240.27959 * 11 9 7 15 15 H 1.07995 * 120.00042 * 359.97438 * 14 11 9 16 16 C 1.37884 * 119.99875 * 180.02562 * 14 11 9 17 17 N 1.31519 * 119.99677 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00137 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46863 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47018 * 119.99896 * 18 16 14 21 21 H 1.48496 * 109.47233 * 240.00129 * 18 16 14 22 22 C 1.34256 * 125.75236 * 89.99813 * 3 2 1 23 23 C 1.50704 * 126.29214 * 0.02562 * 22 3 2 24 24 C 1.53005 * 117.49609 * 196.45729 * 23 22 3 25 25 C 1.53003 * 117.49875 * 127.80316 * 23 22 3 26 26 H 1.08998 * 109.47261 * 299.99301 * 1 2 3 27 27 H 1.09000 * 109.47356 * 60.00398 * 1 2 3 28 28 H 1.09008 * 109.46638 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47647 * 239.99831 * 2 1 3 30 30 H 1.09006 * 109.46953 * 119.99579 * 2 1 3 31 31 H 1.07998 * 125.99318 * 180.26728 * 5 4 3 32 32 H 1.08998 * 109.46853 * 265.38704 * 10 9 7 33 33 H 1.09003 * 109.46916 * 25.38740 * 10 9 7 34 34 H 1.09003 * 109.46479 * 145.38326 * 10 9 7 35 35 H 1.09002 * 109.47016 * 299.99843 * 13 11 9 36 36 H 1.09000 * 109.47211 * 60.00336 * 13 11 9 37 37 H 1.09005 * 109.46783 * 180.02562 * 13 11 9 38 38 H 0.96999 * 119.99507 * 180.02562 * 17 16 14 39 39 H 1.08999 * 115.55142 * 342.12883 * 23 22 3 40 40 H 1.08997 * 117.49833 * 0.02562 * 24 23 22 41 41 H 1.09003 * 117.49545 * 145.02302 * 24 23 22 42 42 H 1.08999 * 117.49802 * 214.97778 * 25 23 22 43 43 H 1.09007 * 117.49716 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2904 2.1523 -1.1355 5 6 2.7012 3.3312 -0.7573 6 6 2.7160 3.3564 0.6553 7 6 3.1164 4.4919 1.5062 8 8 4.0959 4.4003 2.2210 9 7 2.3968 5.6315 1.4918 10 6 1.1546 5.7036 0.7184 11 6 2.8537 6.7959 2.2543 12 1 3.7881 6.5546 2.7609 13 6 3.0786 7.9725 1.3024 14 6 1.8101 7.1684 3.2757 15 1 0.8977 6.5954 3.3492 16 6 2.0198 8.2416 4.1157 17 7 3.1308 8.9397 4.0257 18 14 0.7261 8.7038 5.3813 19 1 -0.4228 7.7684 5.2790 20 1 1.3133 8.6204 6.7426 21 1 0.2588 10.0904 5.1279 22 6 2.2797 2.1208 1.0896 23 6 2.1253 1.6827 2.5232 24 6 2.1028 2.7728 3.5965 25 6 3.3277 1.8664 3.4514 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9826 4.1447 -1.4096 32 1 1.3633 6.1224 -0.2660 33 1 0.7377 4.7027 0.6065 34 1 0.4387 6.3392 1.2396 35 1 3.8335 7.7030 0.5637 36 1 2.1442 8.2137 0.7958 37 1 3.4189 8.8388 1.8697 38 1 3.2784 9.6944 4.6169 39 1 1.4961 0.8069 2.6820 40 1 2.1992 3.8069 3.2657 41 1 1.4590 2.6140 4.4617 42 1 3.4892 1.1117 4.2211 43 1 4.2305 2.3038 3.0251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338414295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = 72.178073 kcal Electronic energy + Delta-G solvation = -24424.896172 eV Core-core repulsion = 21087.162839 eV Total energy + Delta-G solvation = -3337.733333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.38856 -38.66433 -36.75314 -35.11738 -34.54846 -32.74136 -30.14226 -30.00749 -28.64956 -25.99169 -25.19158 -24.41976 -23.35737 -22.20994 -21.79967 -20.69228 -19.36535 -18.22592 -17.11071 -16.37612 -16.01785 -15.54066 -15.19379 -14.51225 -14.42623 -14.41439 -14.13797 -13.95866 -13.42290 -12.91457 -12.62555 -12.49854 -12.35499 -12.24946 -11.62853 -11.59047 -11.41189 -11.35713 -11.07800 -11.00557 -10.85939 -10.79167 -10.71971 -10.62680 -10.20668 -10.14157 -10.13089 -9.13052 -9.10765 -8.93283 -8.40138 -8.16487 -7.49061 -6.03849 -4.11142 1.80162 2.42669 2.67966 3.27669 3.35650 3.38123 3.53317 4.08745 4.18301 4.39286 4.46102 4.52479 4.76085 4.93122 4.99274 5.03026 5.05300 5.24654 5.27594 5.32029 5.48699 5.56174 5.76256 5.81712 5.87903 5.93021 5.98718 6.14664 6.18930 6.47464 6.48559 6.59824 6.64004 6.81448 6.91172 7.00732 7.12493 7.51851 7.60228 7.76649 7.77356 8.06847 8.24925 8.61357 8.88510 9.16423 9.55464 11.01456 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004911 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.017334 B = 5700.116805 C = 6073.372869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.363 5.363 4 N -0.303 5.303 5 C 0.083 3.917 6 C -0.271 4.271 7 C 0.584 3.416 8 O -0.548 6.548 9 N -0.586 5.586 10 C 0.090 3.910 11 C 0.258 3.742 12 H 0.064 0.936 13 C -0.147 4.147 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.163 3.837 23 C -0.125 4.125 24 C -0.156 4.156 25 C -0.152 4.152 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.011 0.989 36 H 0.029 0.971 37 H 0.093 0.907 38 H 0.262 0.738 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.141 -15.498 -6.559 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.143 5.143 4 N -0.123 5.123 5 C -0.104 4.104 6 C -0.286 4.286 7 C 0.370 3.630 8 O -0.427 6.427 9 N -0.317 5.317 10 C -0.054 4.054 11 C 0.158 3.842 12 H 0.082 0.918 13 C -0.205 4.205 14 C -0.560 4.560 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.033 3.967 23 C -0.145 4.145 24 C -0.193 4.193 25 C -0.189 4.189 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.203 0.797 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.860 -16.249 -7.137 18.401 hybrid contribution -0.718 0.827 1.170 1.603 sum -5.579 -15.422 -5.967 17.452 Atomic orbital electron populations 1.22198 0.94252 1.02932 1.03487 1.21662 0.95250 0.78055 1.04353 1.48268 1.51052 1.11954 1.03074 1.77075 1.23288 1.04519 1.07410 1.23843 0.97568 0.95391 0.93579 1.20203 1.18167 0.96093 0.94129 1.17224 0.83013 0.81654 0.81111 1.90716 1.27987 1.81927 1.42106 1.48169 1.22517 1.13313 1.47682 1.21516 0.87664 1.01045 0.95164 1.18939 0.96999 0.79621 0.88619 0.91821 1.22085 0.97896 1.02422 0.98105 1.21343 1.04047 1.13516 1.17137 0.92216 1.24876 0.95582 0.96060 0.97192 1.69893 1.24624 1.19588 1.38459 0.86481 0.81572 0.78205 0.81375 1.19849 1.20960 1.21027 1.20409 0.97065 0.90356 0.88843 1.20495 1.05762 1.02675 0.85551 1.23300 1.00556 0.97544 0.97919 1.23200 0.93816 1.02103 0.99807 0.91831 0.91506 0.90589 0.88683 0.88976 0.79730 0.94060 0.92897 0.90561 0.97028 0.95171 0.88886 0.92814 0.86982 0.86219 0.88395 0.88719 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.13 1.18 6.84 -4.04 -0.03 1.16 16 3 N -0.36 -5.01 3.58 -56.60 -0.20 -5.21 16 4 N -0.30 -4.66 12.50 30.86 0.39 -4.28 16 5 C 0.08 1.31 11.46 -16.98 -0.19 1.12 16 6 C -0.27 -4.82 4.15 -105.06 -0.44 -5.25 16 7 C 0.58 12.34 4.58 -12.51 -0.06 12.28 16 8 O -0.55 -13.29 13.47 5.27 0.07 -13.22 16 9 N -0.59 -12.58 2.72 -176.53 -0.48 -13.06 16 10 C 0.09 1.62 8.98 59.85 0.54 2.15 16 11 C 0.26 6.52 2.63 -69.09 -0.18 6.34 16 12 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 13 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 14 C -0.52 -13.84 8.03 -34.44 -0.28 -14.12 16 15 H 0.06 1.57 7.26 -52.49 -0.38 1.19 16 16 C 0.07 1.75 5.30 -17.81 -0.09 1.66 16 17 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 18 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.16 2.55 6.66 -81.60 -0.54 2.01 16 23 C -0.12 -1.74 5.79 -91.77 -0.53 -2.27 16 24 C -0.16 -2.55 9.57 -26.69 -0.26 -2.80 16 25 C -0.15 -2.27 9.70 -26.69 -0.26 -2.53 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.69 7.48 -51.93 -0.39 0.30 16 31 H 0.19 2.52 8.06 -52.49 -0.42 2.09 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.87 6.71 -51.93 -0.35 0.52 16 34 H 0.08 1.42 6.97 -51.93 -0.36 1.06 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 37 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.11 1.21 7.63 -51.93 -0.40 0.81 16 40 H 0.12 2.46 4.76 -51.93 -0.25 2.21 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.12 2.11 6.47 -51.93 -0.34 1.77 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -31.24 346.80 -7.47 -38.72 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.47 Total: 4.66 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.61 Total: -4.41 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.33 Total: -46.79 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.24 -7.47 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.894 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds