Wall clock time and date at job start Tue Mar 31 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47022 * 2 1 4 4 N 1.39928 * 125.75552 * 270.02368 * 3 2 1 5 5 C 1.30445 * 108.90111 * 179.73102 * 4 3 2 6 6 C 1.41298 * 108.01848 * 0.38073 * 5 4 3 7 7 C 1.47432 * 126.41186 * 179.87554 * 6 5 4 8 8 O 1.21605 * 119.99973 * 244.68693 * 7 6 5 9 9 N 1.34781 * 119.99860 * 64.69287 * 7 6 5 10 10 C 1.46508 * 119.99707 * 5.15438 * 9 7 6 11 11 C 1.46494 * 120.00147 * 184.87723 * 9 7 6 12 12 H 1.09000 * 109.46916 * 0.27734 * 11 9 7 13 13 C 1.52998 * 109.46896 * 120.27579 * 11 9 7 14 14 C 1.50698 * 109.47130 * 240.27959 * 11 9 7 15 15 H 1.07995 * 120.00042 * 359.97438 * 14 11 9 16 16 C 1.37884 * 119.99875 * 180.02562 * 14 11 9 17 17 N 1.31519 * 119.99677 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00137 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46863 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47018 * 119.99896 * 18 16 14 21 21 H 1.48496 * 109.47233 * 240.00129 * 18 16 14 22 22 C 1.34256 * 125.75236 * 89.99813 * 3 2 1 23 23 C 1.50704 * 126.29214 * 0.02562 * 22 3 2 24 24 C 1.53005 * 117.49609 * 196.45729 * 23 22 3 25 25 C 1.53003 * 117.49875 * 127.80316 * 23 22 3 26 26 H 1.08998 * 109.47261 * 299.99301 * 1 2 3 27 27 H 1.09000 * 109.47356 * 60.00398 * 1 2 3 28 28 H 1.09008 * 109.46638 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47647 * 239.99831 * 2 1 3 30 30 H 1.09006 * 109.46953 * 119.99579 * 2 1 3 31 31 H 1.07998 * 125.99318 * 180.26728 * 5 4 3 32 32 H 1.08998 * 109.46853 * 265.38704 * 10 9 7 33 33 H 1.09003 * 109.46916 * 25.38740 * 10 9 7 34 34 H 1.09003 * 109.46479 * 145.38326 * 10 9 7 35 35 H 1.09002 * 109.47016 * 299.99843 * 13 11 9 36 36 H 1.09000 * 109.47211 * 60.00336 * 13 11 9 37 37 H 1.09005 * 109.46783 * 180.02562 * 13 11 9 38 38 H 0.96999 * 119.99507 * 180.02562 * 17 16 14 39 39 H 1.08999 * 115.55142 * 342.12883 * 23 22 3 40 40 H 1.08997 * 117.49833 * 0.02562 * 24 23 22 41 41 H 1.09003 * 117.49545 * 145.02302 * 24 23 22 42 42 H 1.08999 * 117.49802 * 214.97778 * 25 23 22 43 43 H 1.09007 * 117.49716 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2904 2.1523 -1.1355 5 6 2.7012 3.3312 -0.7573 6 6 2.7160 3.3564 0.6553 7 6 3.1164 4.4919 1.5062 8 8 4.0959 4.4003 2.2210 9 7 2.3968 5.6315 1.4918 10 6 1.1546 5.7036 0.7184 11 6 2.8537 6.7959 2.2543 12 1 3.7881 6.5546 2.7609 13 6 3.0786 7.9725 1.3024 14 6 1.8101 7.1684 3.2757 15 1 0.8977 6.5954 3.3492 16 6 2.0198 8.2416 4.1157 17 7 3.1308 8.9397 4.0257 18 14 0.7261 8.7038 5.3813 19 1 -0.4228 7.7684 5.2790 20 1 1.3133 8.6204 6.7426 21 1 0.2588 10.0904 5.1279 22 6 2.2797 2.1208 1.0896 23 6 2.1253 1.6827 2.5232 24 6 2.1028 2.7728 3.5965 25 6 3.3277 1.8664 3.4514 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9826 4.1447 -1.4096 32 1 1.3633 6.1224 -0.2660 33 1 0.7377 4.7027 0.6065 34 1 0.4387 6.3392 1.2396 35 1 3.8335 7.7030 0.5637 36 1 2.1442 8.2137 0.7958 37 1 3.4189 8.8388 1.8697 38 1 3.2784 9.6944 4.6169 39 1 1.4961 0.8069 2.6820 40 1 2.1992 3.8069 3.2657 41 1 1.4590 2.6140 4.4617 42 1 3.4892 1.1117 4.2211 43 1 4.2305 2.3038 3.0251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338414295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:04 Heat of formation + Delta-G solvation = 53.539070 kcal Electronic energy + Delta-G solvation = -24425.704420 eV Core-core repulsion = 21087.162839 eV Total energy + Delta-G solvation = -3338.541581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.60690 -40.28403 -37.99707 -36.90576 -35.49451 -34.65904 -31.75442 -31.14234 -30.06888 -27.55614 -27.26270 -25.58975 -24.36207 -23.53263 -23.20574 -22.07439 -20.69706 -19.67855 -18.57426 -18.15598 -17.58305 -17.07017 -16.47852 -16.09687 -15.73669 -15.55644 -15.45479 -15.19856 -14.61121 -14.48972 -14.25559 -13.93946 -13.54232 -13.43197 -13.06705 -12.96032 -12.85556 -12.69476 -12.67621 -12.54408 -12.38415 -12.31233 -12.15919 -12.06958 -11.93723 -11.92116 -11.32327 -11.13032 -10.66779 -10.45466 -10.20544 -9.46629 -9.24631 -8.10240 -6.25563 0.59100 1.36800 1.40726 1.42742 1.44449 1.55397 1.96716 2.40734 2.61045 2.95193 3.18040 3.36503 3.51472 3.82369 3.95159 4.02837 4.03752 4.11256 4.17471 4.37693 4.47252 4.54063 4.61950 4.74374 4.80421 4.81924 4.82828 4.89545 4.94622 4.98389 5.01491 5.11248 5.19776 5.24857 5.31125 5.42299 5.53129 5.68397 5.73309 5.95290 6.09334 6.21785 6.58087 6.81903 6.88975 7.37696 7.55926 8.94382 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.004911 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.017334 B = 5700.116805 C = 6073.372869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.351 5.351 4 N -0.308 5.308 5 C 0.080 3.920 6 C -0.301 4.301 7 C 0.587 3.413 8 O -0.591 6.591 9 N -0.592 5.592 10 C 0.095 3.905 11 C 0.265 3.735 12 H 0.012 0.988 13 C -0.133 4.133 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.961 3.039 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.163 3.837 23 C -0.102 4.102 24 C -0.179 4.179 25 C -0.150 4.150 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.200 0.800 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.020 0.980 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.263 0.737 39 H 0.157 0.843 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.130 0.870 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -17.989 -6.982 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 N -0.131 5.131 4 N -0.128 5.128 5 C -0.106 4.106 6 C -0.315 4.315 7 C 0.375 3.625 8 O -0.473 6.473 9 N -0.321 5.321 10 C -0.048 4.048 11 C 0.163 3.837 12 H 0.030 0.970 13 C -0.192 4.192 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.183 4.183 17 N -0.557 5.557 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.031 3.969 23 C -0.121 4.121 24 C -0.216 4.216 25 C -0.188 4.188 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.216 0.784 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.174 0.826 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.111 -18.770 -7.609 21.466 hybrid contribution 0.006 1.513 1.273 1.978 sum -7.106 -17.257 -6.336 19.709 Atomic orbital electron populations 1.22166 0.92957 1.04647 1.02422 1.22197 0.96275 0.75661 1.06365 1.48668 1.49475 1.13041 1.01917 1.77042 1.23213 1.04355 1.08215 1.24040 0.97556 0.96129 0.92844 1.19980 1.20950 0.95997 0.94621 1.17645 0.82099 0.82113 0.80621 1.90683 1.29916 1.82660 1.44057 1.48098 1.23729 1.12570 1.47742 1.21604 0.85904 1.01975 0.95334 1.18526 0.94699 0.81297 0.89130 0.96982 1.21884 0.98743 1.00867 0.97656 1.21541 1.04093 1.13509 1.17739 0.92310 1.25681 0.97496 0.96031 0.99049 1.70031 1.26314 1.20000 1.39307 0.85456 0.79171 0.78178 0.78508 1.18954 1.21093 1.20221 1.20619 0.96194 0.89908 0.90145 1.20684 1.05081 1.02560 0.83817 1.23184 1.02528 0.95867 1.00063 1.23152 0.92290 1.02333 1.01002 0.92431 0.92995 0.87482 0.87330 0.86430 0.78354 0.91988 0.91367 0.91435 0.96120 0.93658 0.91316 0.92749 0.82582 0.90784 0.86306 0.85173 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 10.24 71.98 0.74 -1.23 16 2 C 0.11 1.65 6.84 86.38 0.59 2.24 16 3 N -0.35 -8.76 3.58 -332.99 -1.19 -9.95 16 4 N -0.31 -8.89 12.50 -56.27 -0.70 -9.59 16 5 C 0.08 2.48 11.46 85.65 0.98 3.46 16 6 C -0.30 -10.64 4.15 -20.15 -0.08 -10.73 16 7 C 0.59 25.77 4.58 86.66 0.40 26.17 16 8 O -0.59 -30.58 13.47 -4.05 -0.05 -30.64 16 9 N -0.59 -26.18 2.72 -830.66 -2.26 -28.44 16 10 C 0.09 3.36 8.98 127.77 1.15 4.51 16 11 C 0.27 13.99 2.63 44.25 0.12 14.11 16 12 H 0.01 0.76 6.91 -2.39 -0.02 0.75 16 13 C -0.13 -6.53 8.97 71.98 0.65 -5.88 16 14 C -0.53 -28.92 8.03 25.60 0.21 -28.71 16 15 H 0.06 3.14 7.26 -2.91 -0.02 3.12 16 16 C 0.02 0.92 5.30 84.66 0.45 1.37 16 17 N -0.92 -53.01 11.32 21.45 0.24 -52.77 16 18 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 C 0.16 4.84 6.66 42.14 0.28 5.13 16 23 C -0.10 -2.60 5.79 -11.54 -0.07 -2.66 16 24 C -0.18 -5.78 9.57 30.62 0.29 -5.49 16 25 C -0.15 -4.36 9.70 30.62 0.30 -4.06 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.12 1.16 7.48 -2.38 -0.02 1.14 16 31 H 0.20 5.25 8.06 -2.91 -0.02 5.23 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.20 6.71 -2.39 -0.02 2.18 16 34 H 0.07 2.50 6.97 -2.39 -0.02 2.48 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.04 2.03 7.67 -2.39 -0.02 2.01 16 37 H 0.07 3.73 6.07 -2.38 -0.01 3.71 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.16 2.59 7.63 -2.39 -0.02 2.57 16 40 H 0.07 3.16 4.76 -2.39 -0.01 3.15 16 41 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.08 3.00 6.47 -2.38 -0.02 2.98 16 Total: -1.00 -71.92 346.80 5.05 -66.87 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.01 Total: 21.13 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.99 Total: -1.78 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.91 Total: -100.75 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.92 5.05 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.405 kcal (2) G-P(sol) polarization free energy of solvation -71.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds