Wall clock time and date at job start Tue Mar 31 2020 07:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36891 * 126.39866 * 2 1 4 4 C 1.34659 * 106.81582 * 180.25335 * 3 2 1 5 5 N 1.34131 * 108.02462 * 359.74425 * 4 3 2 6 6 C 1.30495 * 109.25174 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.64680 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47616 * 90.02216 * 7 6 5 9 9 C 1.50694 * 109.47460 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99880 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00022 * 180.02562 * 9 8 7 12 12 C 1.46920 * 120.62842 * 179.97438 * 11 9 8 13 13 C 1.53187 * 108.89681 * 233.55650 * 12 11 9 14 14 C 1.53071 * 109.29548 * 305.58486 * 13 12 11 15 15 C 1.50701 * 109.44475 * 181.23482 * 14 13 12 16 16 H 1.08003 * 119.99821 * 245.24446 * 15 14 13 17 17 C 1.37874 * 120.00204 * 65.23906 * 15 14 13 18 18 N 1.31518 * 119.99844 * 9.58930 * 17 15 14 19 19 Si 1.86798 * 120.00365 * 189.58428 * 17 15 14 20 20 H 1.48499 * 109.47164 * 94.99341 * 19 17 15 21 21 H 1.48496 * 109.47175 * 214.99616 * 19 17 15 22 22 H 1.48506 * 109.46750 * 334.99426 * 19 17 15 23 23 C 1.53040 * 109.66197 * 61.14927 * 14 13 12 24 24 C 1.46919 * 120.62910 * 0.02562 * 11 9 8 25 25 H 1.09003 * 109.47263 * 270.18859 * 1 2 3 26 26 H 1.09005 * 109.47315 * 30.18247 * 1 2 3 27 27 H 1.08998 * 109.47308 * 150.18403 * 1 2 3 28 28 H 1.07999 * 126.59029 * 359.97438 * 3 2 1 29 29 H 1.08010 * 125.98970 * 179.72275 * 4 3 2 30 30 H 1.08998 * 109.47305 * 330.01731 * 7 6 5 31 31 H 1.09003 * 109.46908 * 210.01843 * 7 6 5 32 32 H 1.08998 * 109.47179 * 59.99438 * 8 7 6 33 33 H 1.09009 * 109.46951 * 300.00142 * 8 7 6 34 34 H 1.09000 * 109.59131 * 353.41911 * 12 11 9 35 35 H 1.09003 * 109.58706 * 113.69708 * 12 11 9 36 36 H 1.09006 * 109.49456 * 65.38882 * 13 12 11 37 37 H 1.09000 * 109.50264 * 185.48906 * 13 12 11 38 38 H 1.09004 * 109.34754 * 301.12351 * 14 13 12 39 39 H 0.96997 * 119.99642 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.49926 * 178.75439 * 23 14 13 41 41 H 1.08999 * 109.52727 * 58.66713 * 23 14 13 42 42 H 1.08994 * 109.58851 * 246.15437 * 24 11 9 43 43 H 1.08999 * 109.58987 * 6.44786 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5095 -0.6903 -0.0034 6 6 2.2663 -1.0869 0.0030 7 6 1.8018 -2.5206 0.0079 8 6 1.6505 -3.0028 1.4521 9 6 1.1866 -4.4365 1.4570 10 8 0.9954 -5.0156 0.4087 11 7 0.9833 -5.0750 2.6264 12 6 0.5306 -6.4726 2.6473 13 6 -0.7253 -6.5743 3.5186 14 6 -0.4314 -5.9848 4.9004 15 6 -1.6556 -6.1107 5.7702 16 1 -2.1703 -5.2239 6.1097 17 6 -2.1186 -7.3578 6.1325 18 7 -1.3942 -8.4265 5.8820 19 14 -3.7748 -7.5295 6.9792 20 1 -4.8200 -7.8259 5.9668 21 1 -3.7135 -8.6372 7.9664 22 1 -4.1074 -6.2619 7.6776 23 6 -0.0548 -4.5081 4.7608 24 6 1.2091 -4.3863 3.9044 25 1 -0.3634 0.0034 1.0277 26 1 -0.3634 0.8884 -0.5167 27 1 -0.3634 -0.8916 -0.5110 28 1 1.9613 2.1346 -0.0004 29 1 4.4369 1.2612 -0.0115 30 1 2.5343 -3.1416 -0.5076 31 1 0.8410 -2.5929 -0.5018 32 1 0.9180 -2.3817 1.9676 33 1 2.6113 -2.9303 1.9618 34 1 0.2987 -6.7969 1.6329 35 1 1.3155 -7.1048 3.0625 36 1 -1.5375 -6.0164 3.0525 37 1 -1.0136 -7.6205 3.6207 38 1 0.3956 -6.5289 5.3566 39 1 -1.7198 -9.3038 6.1373 40 1 0.1324 -4.0854 5.7479 41 1 -0.8715 -3.9675 4.2824 42 1 2.0484 -4.8476 4.4248 43 1 1.4273 -3.3346 3.7192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349413727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:18 Heat of formation + Delta-G solvation = 11.251375 kcal Electronic energy + Delta-G solvation = -23221.335052 eV Core-core repulsion = 19880.959739 eV Total energy + Delta-G solvation = -3340.375313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24374 -39.74640 -36.94067 -34.24668 -33.77221 -33.48226 -31.16051 -30.46364 -28.94752 -27.25396 -26.32425 -24.68584 -22.93807 -22.11158 -21.53619 -20.05055 -19.64247 -18.30117 -17.42747 -16.70844 -16.23496 -15.94611 -15.63135 -15.23731 -14.62735 -14.55882 -13.95907 -13.56770 -13.48265 -13.30533 -13.16187 -12.97966 -12.83704 -12.67598 -12.56779 -12.19469 -11.99115 -11.68768 -11.29729 -11.19746 -10.93584 -10.69999 -10.46672 -10.20397 -10.10210 -9.78075 -9.66395 -9.54862 -9.10535 -9.02070 -8.52427 -8.37793 -8.05633 -6.08038 -4.10126 1.85205 2.58791 2.92668 2.98367 3.26450 3.34501 3.36380 3.44297 4.27200 4.39269 4.45532 4.59875 4.79766 4.85228 4.96874 5.03134 5.12604 5.23543 5.24463 5.35342 5.46351 5.53182 5.73971 5.81364 5.87631 5.96369 6.01892 6.12077 6.19326 6.35038 6.39904 6.55693 6.60015 6.76981 6.90777 6.98714 7.10635 7.23720 7.64053 7.83055 7.88614 7.94094 7.97570 8.35788 8.50455 8.93420 9.53845 11.00693 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.003155 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.050336 B = 8873.576866 C = 9269.835224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C -0.064 4.064 4 C -0.029 4.029 5 N -0.489 5.489 6 C 0.212 3.788 7 C -0.018 4.018 8 C -0.132 4.132 9 C 0.512 3.488 10 O -0.556 6.556 11 N -0.599 5.599 12 C 0.108 3.892 13 C -0.116 4.116 14 C 0.047 3.953 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.105 3.895 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 16.547 -9.564 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.196 4.196 4 C -0.177 4.177 5 N -0.208 5.208 6 C -0.050 4.050 7 C -0.057 4.057 8 C -0.173 4.173 9 C 0.300 3.700 10 O -0.436 6.436 11 N -0.331 5.331 12 C -0.013 4.013 13 C -0.154 4.154 14 C 0.028 3.972 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.161 4.161 24 C -0.018 4.018 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.190 0.810 29 H 0.186 0.814 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.366 15.530 -10.081 19.277 hybrid contribution -1.709 0.585 0.672 1.927 sum 3.657 16.116 -9.409 19.016 Atomic orbital electron populations 1.22110 0.76564 1.04829 1.04012 1.45340 1.07663 1.06678 1.54426 1.22684 0.91430 0.92500 1.13016 1.22306 0.96391 0.91259 1.07789 1.70276 1.18516 1.11954 1.20043 1.23324 0.85752 0.90910 1.05058 1.19728 1.03023 0.86142 0.96836 1.21605 1.03690 0.94172 0.97838 1.20398 0.77693 0.88318 0.83610 1.90656 1.53210 1.68489 1.31224 1.48211 1.65238 1.14061 1.05588 1.21847 0.98164 0.79947 1.01361 1.21937 0.93754 1.03367 0.96386 1.18653 0.97241 0.89006 0.92280 1.21141 1.11392 0.92133 1.30867 0.92739 1.24959 0.97055 0.96101 0.95644 1.69952 1.36463 0.98367 1.47732 0.86670 0.84812 0.77757 0.79314 1.20724 1.21294 1.19939 1.21997 0.94876 1.01434 0.97841 1.21887 0.99615 0.95989 0.84312 0.90172 0.89587 0.89125 0.81000 0.81403 0.87906 0.89675 0.89297 0.88331 0.90528 0.92148 0.94140 0.89711 0.94720 0.92945 0.91917 0.93038 0.91638 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.97 59.84 0.66 1.09 16 2 N -0.46 -4.52 3.15 -121.28 -0.38 -4.90 16 3 C -0.06 -0.59 11.58 -16.56 -0.19 -0.78 16 4 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 5 N -0.49 -6.77 11.25 -10.82 -0.12 -6.89 16 6 C 0.21 2.59 7.16 -155.42 -1.11 1.48 16 7 C -0.02 -0.21 4.81 -27.88 -0.13 -0.35 16 8 C -0.13 -1.63 4.03 -27.89 -0.11 -1.74 16 9 C 0.51 8.35 7.70 -10.99 -0.08 8.27 16 10 O -0.56 -10.68 15.39 5.56 0.09 -10.60 16 11 N -0.60 -10.30 2.97 -172.81 -0.51 -10.82 16 12 C 0.11 2.10 6.43 -3.72 -0.02 2.08 16 13 C -0.12 -2.58 5.21 -26.60 -0.14 -2.72 16 14 C 0.05 1.08 1.92 -91.71 -0.18 0.91 16 15 C -0.52 -13.54 8.48 -34.44 -0.29 -13.83 16 16 H 0.05 1.42 7.77 -52.48 -0.41 1.01 16 17 C 0.06 1.72 5.19 -17.82 -0.09 1.63 16 18 N -0.89 -24.64 12.15 55.43 0.67 -23.97 16 19 Si 0.89 20.70 29.55 -169.99 -5.02 15.67 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.12 -2.29 5.30 -26.63 -0.14 -2.44 16 24 C 0.10 1.62 6.34 -3.74 -0.02 1.60 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.55 7.04 -51.93 -0.37 0.19 16 28 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.08 0.96 7.02 -51.93 -0.36 0.59 16 32 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 33 H 0.10 1.18 7.94 -51.92 -0.41 0.77 16 34 H 0.08 1.50 7.00 -51.93 -0.36 1.14 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 2.11 6.87 -51.93 -0.36 1.75 16 38 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.87 5.93 -51.93 -0.31 0.57 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -31.92 347.67 -8.88 -40.80 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.76 Total: 0.81 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.08 Total: -5.34 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.34 Total: -46.58 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.92 -8.88 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349413727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.048 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds