Wall clock time and date at job start Tue Mar 31 2020 07:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36891 * 126.39866 * 2 1 4 4 C 1.34659 * 106.81582 * 180.25335 * 3 2 1 5 5 N 1.34131 * 108.02462 * 359.74425 * 4 3 2 6 6 C 1.30495 * 109.25174 * 0.02562 * 5 4 3 7 7 C 1.50702 * 125.64680 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47616 * 90.02216 * 7 6 5 9 9 C 1.50694 * 109.47460 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99880 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00022 * 180.02562 * 9 8 7 12 12 C 1.46920 * 120.62842 * 179.97438 * 11 9 8 13 13 C 1.53187 * 108.89681 * 233.55650 * 12 11 9 14 14 C 1.53071 * 109.29548 * 305.58486 * 13 12 11 15 15 C 1.50701 * 109.44475 * 181.23482 * 14 13 12 16 16 H 1.08003 * 119.99821 * 245.24446 * 15 14 13 17 17 C 1.37874 * 120.00204 * 65.23906 * 15 14 13 18 18 N 1.31518 * 119.99844 * 9.58930 * 17 15 14 19 19 Si 1.86798 * 120.00365 * 189.58428 * 17 15 14 20 20 H 1.48499 * 109.47164 * 94.99341 * 19 17 15 21 21 H 1.48496 * 109.47175 * 214.99616 * 19 17 15 22 22 H 1.48506 * 109.46750 * 334.99426 * 19 17 15 23 23 C 1.53040 * 109.66197 * 61.14927 * 14 13 12 24 24 C 1.46919 * 120.62910 * 0.02562 * 11 9 8 25 25 H 1.09003 * 109.47263 * 270.18859 * 1 2 3 26 26 H 1.09005 * 109.47315 * 30.18247 * 1 2 3 27 27 H 1.08998 * 109.47308 * 150.18403 * 1 2 3 28 28 H 1.07999 * 126.59029 * 359.97438 * 3 2 1 29 29 H 1.08010 * 125.98970 * 179.72275 * 4 3 2 30 30 H 1.08998 * 109.47305 * 330.01731 * 7 6 5 31 31 H 1.09003 * 109.46908 * 210.01843 * 7 6 5 32 32 H 1.08998 * 109.47179 * 59.99438 * 8 7 6 33 33 H 1.09009 * 109.46951 * 300.00142 * 8 7 6 34 34 H 1.09000 * 109.59131 * 353.41911 * 12 11 9 35 35 H 1.09003 * 109.58706 * 113.69708 * 12 11 9 36 36 H 1.09006 * 109.49456 * 65.38882 * 13 12 11 37 37 H 1.09000 * 109.50264 * 185.48906 * 13 12 11 38 38 H 1.09004 * 109.34754 * 301.12351 * 14 13 12 39 39 H 0.96997 * 119.99642 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.49926 * 178.75439 * 23 14 13 41 41 H 1.08999 * 109.52727 * 58.66713 * 23 14 13 42 42 H 1.08994 * 109.58851 * 246.15437 * 24 11 9 43 43 H 1.08999 * 109.58987 * 6.44786 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 -0.0057 5 7 3.5095 -0.6903 -0.0034 6 6 2.2663 -1.0869 0.0030 7 6 1.8018 -2.5206 0.0079 8 6 1.6505 -3.0028 1.4521 9 6 1.1866 -4.4365 1.4570 10 8 0.9954 -5.0156 0.4087 11 7 0.9833 -5.0750 2.6264 12 6 0.5306 -6.4726 2.6473 13 6 -0.7253 -6.5743 3.5186 14 6 -0.4314 -5.9848 4.9004 15 6 -1.6556 -6.1107 5.7702 16 1 -2.1703 -5.2239 6.1097 17 6 -2.1186 -7.3578 6.1325 18 7 -1.3942 -8.4265 5.8820 19 14 -3.7748 -7.5295 6.9792 20 1 -4.8200 -7.8259 5.9668 21 1 -3.7135 -8.6372 7.9664 22 1 -4.1074 -6.2619 7.6776 23 6 -0.0548 -4.5081 4.7608 24 6 1.2091 -4.3863 3.9044 25 1 -0.3634 0.0034 1.0277 26 1 -0.3634 0.8884 -0.5167 27 1 -0.3634 -0.8916 -0.5110 28 1 1.9613 2.1346 -0.0004 29 1 4.4369 1.2612 -0.0115 30 1 2.5343 -3.1416 -0.5076 31 1 0.8410 -2.5929 -0.5018 32 1 0.9180 -2.3817 1.9676 33 1 2.6113 -2.9303 1.9618 34 1 0.2987 -6.7969 1.6329 35 1 1.3155 -7.1048 3.0625 36 1 -1.5375 -6.0164 3.0525 37 1 -1.0136 -7.6205 3.6207 38 1 0.3956 -6.5289 5.3566 39 1 -1.7198 -9.3038 6.1373 40 1 0.1324 -4.0854 5.7479 41 1 -0.8715 -3.9675 4.2824 42 1 2.0484 -4.8476 4.4248 43 1 1.4273 -3.3346 3.7192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349413727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:17 Heat of formation + Delta-G solvation = -6.873493 kcal Electronic energy + Delta-G solvation = -23222.121005 eV Core-core repulsion = 19880.959739 eV Total energy + Delta-G solvation = -3341.161267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.00571 -41.12289 -38.47640 -35.34165 -35.00730 -34.65551 -32.93850 -31.93749 -29.89444 -28.11738 -27.75356 -25.89693 -24.51754 -23.65029 -22.26979 -21.48784 -20.58778 -19.72500 -18.61830 -18.18986 -17.53916 -16.96427 -16.77228 -16.47892 -16.34367 -15.50376 -15.04897 -14.91962 -14.72602 -14.55689 -14.30414 -14.24832 -13.89208 -13.65053 -13.62309 -13.46563 -13.28891 -13.12173 -12.85380 -12.75935 -12.48401 -12.20441 -12.14483 -11.96127 -11.43983 -11.08960 -10.91967 -10.87731 -10.67964 -10.52060 -10.41412 -9.54645 -9.29069 -8.12163 -6.20314 1.10489 1.40336 1.43065 1.51571 1.63690 1.91188 2.06448 2.25308 2.43807 3.18263 3.32367 3.73247 3.91206 3.95812 4.01591 4.14448 4.17618 4.32266 4.35785 4.41842 4.48943 4.51264 4.60424 4.63347 4.70178 4.71064 4.72177 4.90900 4.95072 4.97697 5.03985 5.17976 5.24768 5.39492 5.39927 5.52225 5.68082 5.88679 5.97533 6.02088 6.26651 6.37238 6.53257 6.92236 7.17794 7.19220 7.46799 8.95610 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.003155 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.050336 B = 8873.576866 C = 9269.835224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.457 5.457 3 C -0.047 4.047 4 C -0.059 4.059 5 N -0.528 5.528 6 C 0.192 3.808 7 C -0.010 4.010 8 C -0.118 4.118 9 C 0.512 3.488 10 O -0.588 6.588 11 N -0.603 5.603 12 C 0.119 3.881 13 C -0.104 4.104 14 C 0.043 3.957 15 C -0.532 4.532 16 H 0.054 0.946 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.946 3.054 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.116 4.116 24 C 0.110 3.890 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.210 0.790 29 H 0.184 0.816 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.051 0.949 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 19.475 -9.510 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.139 5.139 3 C -0.180 4.180 4 C -0.207 4.207 5 N -0.248 5.248 6 C -0.070 4.070 7 C -0.049 4.049 8 C -0.158 4.158 9 C 0.302 3.698 10 O -0.469 6.469 11 N -0.335 5.335 12 C -0.004 4.004 13 C -0.142 4.142 14 C 0.024 3.976 15 C -0.570 4.570 16 H 0.072 0.928 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.772 3.228 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.154 4.154 24 C -0.012 4.012 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.109 0.891 28 H 0.226 0.774 29 H 0.201 0.799 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.850 18.483 -10.019 21.576 hybrid contribution -1.554 -0.286 0.632 1.702 sum 3.296 18.198 -9.387 20.740 Atomic orbital electron populations 1.22392 0.74502 1.06150 1.05128 1.45553 1.08936 1.06127 1.53252 1.23265 0.90700 0.93765 1.10318 1.22737 0.98155 0.90663 1.09113 1.70194 1.19838 1.13681 1.21083 1.23140 0.85951 0.91278 1.06649 1.19565 1.02704 0.86243 0.96399 1.21551 1.04506 0.91189 0.98593 1.21078 0.76579 0.89592 0.82570 1.90645 1.54415 1.69547 1.32329 1.48255 1.65364 1.13127 1.06784 1.21505 0.96742 0.81926 1.00183 1.21696 0.94862 1.01009 0.96682 1.18628 0.95169 0.92023 0.91774 1.21563 1.12376 0.92086 1.30984 0.92766 1.25697 1.00078 0.96017 0.96610 1.70071 1.37923 0.98666 1.48970 0.85732 0.80915 0.77863 0.78299 1.20584 1.21265 1.18998 1.21858 0.96500 0.97812 0.99211 1.21959 0.98011 0.98266 0.82946 0.89095 0.87123 0.89112 0.77364 0.79924 0.89787 0.89175 0.86955 0.87364 0.91063 0.92374 0.94928 0.93054 0.97730 0.93114 0.91010 0.92837 0.91095 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.97 127.77 1.40 1.95 16 2 N -0.46 -7.67 3.15 -537.62 -1.69 -9.36 16 3 C -0.05 -0.72 11.58 83.08 0.96 0.25 16 4 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 5 N -0.53 -14.03 11.25 -188.13 -2.12 -16.14 16 6 C 0.19 4.37 7.16 138.13 0.99 5.36 16 7 C -0.01 -0.22 4.81 29.85 0.14 -0.07 16 8 C -0.12 -2.62 4.03 29.85 0.12 -2.50 16 9 C 0.51 15.95 7.70 87.65 0.67 16.62 16 10 O -0.59 -22.34 15.39 -3.03 -0.05 -22.39 16 11 N -0.60 -19.99 2.97 -819.03 -2.44 -22.43 16 12 C 0.12 4.67 6.43 86.36 0.55 5.23 16 13 C -0.10 -4.73 5.21 30.68 0.16 -4.57 16 14 C 0.04 2.00 1.92 -11.50 -0.02 1.97 16 15 C -0.53 -28.01 8.48 25.60 0.22 -27.79 16 16 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 17 C 0.01 0.81 5.19 84.65 0.44 1.25 16 18 N -0.92 -52.25 12.15 21.45 0.26 -51.99 16 19 Si 0.95 42.66 29.55 68.60 2.03 44.69 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 C -0.12 -4.12 5.30 30.66 0.16 -3.95 16 24 C 0.11 3.14 6.34 86.35 0.55 3.69 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.09 0.86 7.04 -2.39 -0.02 0.84 16 28 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 31 H 0.09 1.91 7.02 -2.39 -0.02 1.89 16 32 H 0.11 2.02 7.69 -2.39 -0.02 2.00 16 33 H 0.11 2.27 7.94 -2.38 -0.02 2.25 16 34 H 0.07 2.86 7.00 -2.39 -0.02 2.84 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.05 2.66 6.87 -2.39 -0.02 2.64 16 38 H 0.00 0.24 8.09 -2.39 -0.02 0.22 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.11 2.31 5.93 -2.39 -0.01 2.29 16 Total: -1.00 -70.76 347.67 4.32 -66.44 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.99 Total: 13.96 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 7.34 Total: -2.78 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -5.99 Total: -99.92 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -70.76 4.32 -66.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349413727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.567 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds