Wall clock time and date at job start Tue Mar 31 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99597 * 2 1 4 4 H 1.07998 * 119.99495 * 202.34530 * 3 2 1 5 5 C 1.38814 * 120.00213 * 22.33710 * 3 2 1 6 6 N 1.31614 * 120.00104 * 11.35045 * 5 3 2 7 7 Si 1.86799 * 120.00022 * 191.34777 * 5 3 2 8 8 H 1.48502 * 109.47141 * 90.00017 * 7 5 3 9 9 H 1.48497 * 109.47263 * 210.00605 * 7 5 3 10 10 H 1.48504 * 109.47150 * 330.00398 * 7 5 3 11 11 C 1.46497 * 120.00253 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47222 * 270.00462 * 11 2 1 13 13 N 1.46506 * 109.47224 * 179.97438 * 12 11 2 14 14 C 1.46494 * 119.99723 * 269.99997 * 13 12 11 15 15 C 1.34770 * 119.99801 * 89.99992 * 13 12 11 16 16 O 1.21279 * 120.00306 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.99842 * 180.02562 * 15 13 12 18 18 C 1.53000 * 109.46944 * 179.97438 * 17 15 13 19 19 C 1.50703 * 109.46944 * 179.97438 * 18 17 15 20 20 C 1.38677 * 120.41464 * 269.72034 * 19 18 17 21 21 C 1.38630 * 118.41627 * 179.78082 * 20 19 18 22 22 C 1.38223 * 119.16302 * 0.51729 * 21 20 19 23 23 N 1.31850 * 120.76356 * 359.71997 * 22 21 20 24 24 C 1.31883 * 121.72608 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47288 * 274.21326 * 1 2 3 26 26 H 1.08996 * 109.47404 * 34.21713 * 1 2 3 27 27 H 1.08999 * 109.47002 * 154.21663 * 1 2 3 28 28 H 0.97000 * 120.00509 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47185 * 150.00172 * 11 2 1 30 30 H 1.09001 * 109.46896 * 30.00356 * 11 2 1 31 31 H 1.08999 * 109.47277 * 59.99767 * 12 11 2 32 32 H 1.09001 * 109.47098 * 299.99770 * 12 11 2 33 33 H 1.09001 * 109.47008 * 269.99611 * 14 13 12 34 34 H 1.08998 * 109.47406 * 30.00180 * 14 13 12 35 35 H 1.09004 * 109.47064 * 150.00058 * 14 13 12 36 36 H 1.09000 * 109.47223 * 59.99976 * 17 15 13 37 37 H 1.08998 * 109.46984 * 299.99479 * 17 15 13 38 38 H 1.09004 * 109.47474 * 59.99899 * 18 17 15 39 39 H 1.09003 * 109.47461 * 299.99776 * 18 17 15 40 40 H 1.07999 * 120.79091 * 0.02562 * 20 19 18 41 41 H 1.08005 * 120.41451 * 180.21755 * 21 20 19 42 42 H 1.08004 * 119.61975 * 179.74625 * 22 21 20 43 43 H 1.08003 * 119.62022 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5336 2.3430 0.4569 6 7 0.3840 2.2692 1.0933 7 14 2.3364 4.0049 0.1684 8 1 1.8677 4.5631 -1.1254 9 1 1.9679 4.9304 1.2696 10 1 3.8121 3.8421 0.1317 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4438 14 6 2.4515 -4.2472 1.4444 15 6 4.5322 -2.9793 1.4437 16 8 5.1390 -1.9292 1.4427 17 6 5.2853 -4.2847 1.4437 18 6 6.7896 -4.0056 1.4430 19 6 7.5426 -5.3110 1.4436 20 6 7.8989 -5.9154 2.6398 21 6 8.5869 -7.1180 2.5921 22 6 8.9022 -7.6653 1.3626 23 7 8.5515 -7.0599 0.2450 24 6 7.8921 -5.9178 0.2524 25 1 -0.3634 0.0755 1.0249 26 1 -0.3634 0.8497 -0.5779 27 1 -0.3633 -0.9253 -0.4470 28 1 -0.0463 3.0776 1.4129 29 1 3.1500 -1.1385 -0.5133 30 1 1.6085 -2.0285 -0.5130 31 1 1.5001 -1.8399 1.9571 32 1 3.0415 -0.9499 1.9568 33 1 2.2699 -4.5613 2.4723 34 1 1.4992 -4.1167 0.9306 35 1 3.0403 -5.0073 0.9309 36 1 5.0217 -4.8562 0.5538 37 1 5.0218 -4.8561 2.3338 38 1 7.0536 -3.4339 2.3327 39 1 7.0528 -3.4344 0.5527 40 1 7.6430 -5.4620 3.5860 41 1 8.8772 -7.6184 3.5041 42 1 9.4417 -8.5998 1.3168 43 1 7.6222 -5.4512 -0.6835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496739048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:45 Heat of formation + Delta-G solvation = 20.671104 kcal Electronic energy + Delta-G solvation = -22599.242765 eV Core-core repulsion = 19259.275922 eV Total energy + Delta-G solvation = -3339.966843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50398 -39.56159 -36.14819 -34.85558 -34.67546 -32.34096 -31.51405 -30.32144 -28.47883 -26.47305 -25.85936 -25.19092 -23.82621 -23.16624 -21.64068 -20.44523 -18.78687 -17.41927 -16.92490 -16.75492 -16.62787 -15.80314 -15.56255 -15.17039 -14.72148 -14.21907 -13.82956 -13.79842 -13.48731 -13.32873 -13.28498 -12.93689 -12.67183 -12.53850 -12.31822 -12.26804 -11.86457 -11.71313 -11.30542 -11.16123 -10.84300 -10.80697 -10.47868 -10.11228 -10.07926 -9.90795 -9.75206 -9.70844 -9.53509 -9.16686 -8.59144 -8.34118 -6.72333 -5.68806 -3.14128 0.82032 0.99873 2.89034 3.25809 3.43796 3.49213 3.52425 3.55540 4.16737 4.44060 4.53829 4.56738 4.70469 4.73488 4.82075 4.96874 5.01425 5.13161 5.30257 5.39082 5.41800 5.48985 5.50907 5.67299 5.68295 5.71279 5.82216 5.85554 5.99074 6.09608 6.26397 6.30481 6.43324 6.63122 6.74016 6.79489 7.06901 7.39613 7.69732 7.70074 7.73420 7.88217 8.43133 8.48554 9.28602 9.90385 10.38176 11.36753 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.002833 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.750131 B = 9880.718703 C =10439.505396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.600 5.600 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.912 5.912 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.145 3.855 12 C 0.092 3.908 13 N -0.614 5.614 14 C 0.079 3.921 15 C 0.505 3.495 16 O -0.533 6.533 17 C -0.132 4.132 18 C -0.064 4.064 19 C -0.128 4.128 20 C -0.074 4.074 21 C -0.171 4.171 22 C 0.088 3.912 23 N -0.484 5.484 24 C 0.101 3.899 25 H 0.028 0.972 26 H 0.046 0.954 27 H -0.005 1.005 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 -21.256 3.210 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.323 5.323 3 C -0.379 4.379 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.348 5.348 14 C -0.065 4.065 15 C 0.292 3.708 16 O -0.410 6.410 17 C -0.172 4.172 18 C -0.102 4.102 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.191 4.191 22 C -0.069 4.069 23 N -0.193 5.193 24 C -0.056 4.056 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.014 0.986 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.892 -20.919 2.459 23.713 hybrid contribution -0.039 1.171 0.954 1.511 sum 10.853 -19.748 3.413 22.791 Atomic orbital electron populations 1.20822 0.82396 0.95606 0.99272 1.43978 1.01949 1.00645 1.85705 1.19279 0.97967 0.85197 1.35488 0.91200 1.25030 0.97727 0.98600 0.98421 1.70059 1.17962 1.27043 1.40676 0.86216 0.79022 0.83909 0.77244 1.21527 1.21755 1.20354 1.21098 0.96001 0.88114 0.93179 1.22612 0.95426 0.83283 1.01850 1.48111 1.05746 1.07903 1.73067 1.21759 0.97718 0.85667 1.01367 1.20544 0.82348 0.91082 0.76850 1.90748 1.67493 1.33536 1.49186 1.21668 0.94954 0.96424 1.04153 1.20310 0.92099 0.92581 1.05208 1.21005 0.99626 0.98160 0.94211 1.21574 0.95438 0.94538 0.98430 1.22155 1.00372 0.96940 0.99652 1.22757 0.96992 0.99231 0.87875 1.67701 1.10851 1.09244 1.31455 1.22762 0.93879 0.91141 0.97800 0.95383 0.93523 0.98613 0.93813 0.93559 0.94745 0.91559 0.89699 0.92992 0.90874 0.91511 0.88976 0.89242 0.89813 0.89525 0.84769 0.84859 0.82952 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 9.01 59.85 0.54 4.60 16 2 N -0.60 -15.53 2.93 -181.13 -0.53 -16.06 16 3 C -0.25 -7.14 9.67 -15.06 -0.15 -7.29 16 4 H 0.07 2.02 7.84 -52.49 -0.41 1.60 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -26.97 10.58 55.49 0.59 -26.38 16 7 Si 0.91 22.66 29.57 -169.99 -5.03 17.63 16 8 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 C 0.14 3.09 6.03 -4.05 -0.02 3.07 16 12 C 0.09 1.80 5.73 -4.04 -0.02 1.77 16 13 N -0.61 -9.25 2.87 -181.57 -0.52 -9.78 16 14 C 0.08 0.80 10.24 59.84 0.61 1.42 16 15 C 0.50 7.74 7.67 -10.99 -0.08 7.65 16 16 O -0.53 -10.69 15.56 5.56 0.09 -10.61 16 17 C -0.13 -1.34 4.23 -27.88 -0.12 -1.46 16 18 C -0.06 -0.65 4.66 -27.88 -0.13 -0.78 16 19 C -0.13 -1.18 5.15 -104.48 -0.54 -1.72 16 20 C -0.07 -0.60 9.86 -39.27 -0.39 -0.98 16 21 C -0.17 -1.24 10.11 -39.44 -0.40 -1.64 16 22 C 0.09 0.74 11.18 -17.55 -0.20 0.54 16 23 N -0.48 -5.12 10.36 -13.25 -0.14 -5.26 16 24 C 0.10 0.99 10.86 -17.55 -0.19 0.80 16 25 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 26 H 0.05 1.25 7.19 -51.93 -0.37 0.87 16 27 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 30 H 0.03 0.66 7.86 -51.93 -0.41 0.25 16 31 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.08 1.97 7.42 -51.93 -0.39 1.59 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 36 H 0.09 0.79 7.40 -51.93 -0.38 0.41 16 37 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 38 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.09 0.96 8.05 -51.93 -0.42 0.55 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 43 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -34.30 359.24 -8.15 -42.45 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -6.85 Total: -3.31 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.17 Total: 5.89 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.60 Total: -57.47 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.30 -8.15 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496739048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.126 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds