Wall clock time and date at job start Tue Mar 31 2020 07:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99597 * 2 1 4 4 H 1.07998 * 119.99495 * 202.34530 * 3 2 1 5 5 C 1.38814 * 120.00213 * 22.33710 * 3 2 1 6 6 N 1.31614 * 120.00104 * 11.35045 * 5 3 2 7 7 Si 1.86799 * 120.00022 * 191.34777 * 5 3 2 8 8 H 1.48502 * 109.47141 * 90.00017 * 7 5 3 9 9 H 1.48497 * 109.47263 * 210.00605 * 7 5 3 10 10 H 1.48504 * 109.47150 * 330.00398 * 7 5 3 11 11 C 1.46497 * 120.00253 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47222 * 270.00462 * 11 2 1 13 13 N 1.46506 * 109.47224 * 179.97438 * 12 11 2 14 14 C 1.46494 * 119.99723 * 269.99997 * 13 12 11 15 15 C 1.34770 * 119.99801 * 89.99992 * 13 12 11 16 16 O 1.21279 * 120.00306 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.99842 * 180.02562 * 15 13 12 18 18 C 1.53000 * 109.46944 * 179.97438 * 17 15 13 19 19 C 1.50703 * 109.46944 * 179.97438 * 18 17 15 20 20 C 1.38677 * 120.41464 * 269.72034 * 19 18 17 21 21 C 1.38630 * 118.41627 * 179.78082 * 20 19 18 22 22 C 1.38223 * 119.16302 * 0.51729 * 21 20 19 23 23 N 1.31850 * 120.76356 * 359.71997 * 22 21 20 24 24 C 1.31883 * 121.72608 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47288 * 274.21326 * 1 2 3 26 26 H 1.08996 * 109.47404 * 34.21713 * 1 2 3 27 27 H 1.08999 * 109.47002 * 154.21663 * 1 2 3 28 28 H 0.97000 * 120.00509 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47185 * 150.00172 * 11 2 1 30 30 H 1.09001 * 109.46896 * 30.00356 * 11 2 1 31 31 H 1.08999 * 109.47277 * 59.99767 * 12 11 2 32 32 H 1.09001 * 109.47098 * 299.99770 * 12 11 2 33 33 H 1.09001 * 109.47008 * 269.99611 * 14 13 12 34 34 H 1.08998 * 109.47406 * 30.00180 * 14 13 12 35 35 H 1.09004 * 109.47064 * 150.00058 * 14 13 12 36 36 H 1.09000 * 109.47223 * 59.99976 * 17 15 13 37 37 H 1.08998 * 109.46984 * 299.99479 * 17 15 13 38 38 H 1.09004 * 109.47474 * 59.99899 * 18 17 15 39 39 H 1.09003 * 109.47461 * 299.99776 * 18 17 15 40 40 H 1.07999 * 120.79091 * 0.02562 * 20 19 18 41 41 H 1.08005 * 120.41451 * 180.21755 * 21 20 19 42 42 H 1.08004 * 119.61975 * 179.74625 * 22 21 20 43 43 H 1.08003 * 119.62022 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5336 2.3430 0.4569 6 7 0.3840 2.2692 1.0933 7 14 2.3364 4.0049 0.1684 8 1 1.8677 4.5631 -1.1254 9 1 1.9679 4.9304 1.2696 10 1 3.8121 3.8421 0.1317 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4438 14 6 2.4515 -4.2472 1.4444 15 6 4.5322 -2.9793 1.4437 16 8 5.1390 -1.9292 1.4427 17 6 5.2853 -4.2847 1.4437 18 6 6.7896 -4.0056 1.4430 19 6 7.5426 -5.3110 1.4436 20 6 7.8989 -5.9154 2.6398 21 6 8.5869 -7.1180 2.5921 22 6 8.9022 -7.6653 1.3626 23 7 8.5515 -7.0599 0.2450 24 6 7.8921 -5.9178 0.2524 25 1 -0.3634 0.0755 1.0249 26 1 -0.3634 0.8497 -0.5779 27 1 -0.3633 -0.9253 -0.4470 28 1 -0.0463 3.0776 1.4129 29 1 3.1500 -1.1385 -0.5133 30 1 1.6085 -2.0285 -0.5130 31 1 1.5001 -1.8399 1.9571 32 1 3.0415 -0.9499 1.9568 33 1 2.2699 -4.5613 2.4723 34 1 1.4992 -4.1167 0.9306 35 1 3.0403 -5.0073 0.9309 36 1 5.0217 -4.8562 0.5538 37 1 5.0218 -4.8561 2.3338 38 1 7.0536 -3.4339 2.3327 39 1 7.0528 -3.4344 0.5527 40 1 7.6430 -5.4620 3.5860 41 1 8.8772 -7.6184 3.5041 42 1 9.4417 -8.5998 1.3168 43 1 7.6222 -5.4512 -0.6835 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496739048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:44 Heat of formation + Delta-G solvation = -0.746329 kcal Electronic energy + Delta-G solvation = -22600.171495 eV Core-core repulsion = 19259.275922 eV Total energy + Delta-G solvation = -3340.895573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25739 -40.70017 -37.87201 -36.38532 -35.53237 -33.50554 -32.94120 -31.37184 -29.90928 -27.94408 -27.48849 -26.36609 -24.63440 -24.45033 -22.66540 -22.08814 -19.97260 -18.84043 -18.19789 -17.78461 -17.46643 -17.17454 -16.84892 -16.46218 -15.89070 -15.53366 -15.26853 -14.96686 -14.70212 -14.52239 -14.24298 -13.95151 -13.89200 -13.82512 -13.68535 -13.31377 -13.12837 -12.92060 -12.80776 -12.72123 -12.47648 -12.41949 -12.08067 -12.02935 -11.98872 -11.60498 -10.85377 -10.69869 -10.66046 -10.34827 -9.86238 -9.72943 -8.78609 -7.87297 -5.34983 0.19114 0.37775 1.42876 1.43690 1.53432 1.70246 2.08843 2.49561 2.89653 3.26921 3.45712 3.66668 3.77485 3.90929 3.98526 4.04414 4.12811 4.14458 4.29805 4.32193 4.39390 4.47174 4.59972 4.64722 4.68354 4.77852 4.83629 4.88605 4.96500 4.97433 4.99834 5.15834 5.19038 5.25043 5.32817 5.42050 5.55508 5.63866 5.71582 5.82954 6.30056 6.52036 7.06664 7.12795 7.27423 7.83251 8.23944 9.15883 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.002833 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.750131 B = 9880.718703 C =10439.505396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.618 5.618 3 C -0.263 4.263 4 H 0.057 0.943 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.967 3.033 8 H -0.281 1.281 9 H -0.289 1.289 10 H -0.277 1.277 11 C 0.149 3.851 12 C 0.111 3.889 13 N -0.614 5.614 14 C 0.071 3.929 15 C 0.497 3.503 16 O -0.591 6.591 17 C -0.116 4.116 18 C -0.057 4.057 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.165 4.165 22 C 0.079 3.921 23 N -0.513 5.513 24 C 0.087 3.913 25 H 0.007 0.993 26 H 0.019 0.981 27 H 0.036 0.964 28 H 0.250 0.750 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.176 0.824 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.816 -23.931 3.673 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.342 5.342 3 C -0.393 4.393 4 H 0.075 0.925 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.207 1.207 9 H -0.216 1.216 10 H -0.202 1.202 11 C 0.022 3.978 12 C -0.014 4.014 13 N -0.347 5.347 14 C -0.070 4.070 15 C 0.287 3.713 16 O -0.472 6.472 17 C -0.155 4.155 18 C -0.096 4.096 19 C -0.134 4.134 20 C -0.104 4.104 21 C -0.184 4.184 22 C -0.077 4.077 23 N -0.222 5.222 24 C -0.069 4.069 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.168 0.832 41 H 0.181 0.819 42 H 0.193 0.807 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.215 -23.663 2.915 26.348 hybrid contribution -0.095 1.882 0.817 2.053 sum 11.120 -21.782 3.731 24.739 Atomic orbital electron populations 1.20603 0.81882 0.96385 0.97861 1.44179 1.02555 1.01386 1.86049 1.19419 0.97699 0.86865 1.35350 0.92474 1.25737 0.98484 1.01677 0.98585 1.70199 1.18949 1.27562 1.41456 0.85274 0.78085 0.79925 0.77233 1.20709 1.21557 1.20230 1.21131 0.95058 0.87172 0.94434 1.21954 0.95191 0.84635 0.99666 1.48133 1.05984 1.08026 1.72585 1.22103 0.97944 0.83682 1.03283 1.21516 0.82322 0.92240 0.75229 1.90726 1.68664 1.36090 1.51714 1.21652 0.93849 0.93488 1.06538 1.20167 0.92520 0.93010 1.03866 1.20837 1.00240 0.97579 0.94707 1.21851 0.95122 0.94832 0.98601 1.22469 0.99131 0.96407 1.00424 1.23249 0.96717 0.99948 0.87822 1.67707 1.11776 1.09818 1.32860 1.22867 0.94377 0.91387 0.98301 0.97450 0.96265 0.94587 0.94085 0.95615 0.91566 0.90956 0.94483 0.91028 0.90394 0.88321 0.86550 0.86396 0.90979 0.91243 0.83153 0.81898 0.80688 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 9.01 127.77 1.15 9.94 16 2 N -0.62 -32.41 2.93 -726.96 -2.13 -34.53 16 3 C -0.26 -15.45 9.67 84.03 0.81 -14.63 16 4 H 0.06 3.43 7.84 -2.91 -0.02 3.40 16 5 C -0.05 -2.91 5.13 84.86 0.44 -2.47 16 6 N -0.94 -56.40 10.58 21.65 0.23 -56.17 16 7 Si 0.97 47.47 29.57 68.60 2.03 49.50 16 8 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 C 0.15 6.38 6.03 86.38 0.52 6.90 16 12 C 0.11 4.36 5.73 86.38 0.49 4.85 16 13 N -0.61 -17.71 2.87 -846.77 -2.43 -20.14 16 14 C 0.07 1.20 10.24 127.77 1.31 2.51 16 15 C 0.50 14.99 7.67 87.66 0.67 15.66 16 16 O -0.59 -24.69 15.56 -3.03 -0.05 -24.73 16 17 C -0.12 -2.10 4.23 29.85 0.13 -1.97 16 18 C -0.06 -1.13 4.66 29.85 0.14 -0.99 16 19 C -0.13 -2.22 5.15 -19.77 -0.10 -2.32 16 20 C -0.08 -1.06 9.86 22.47 0.22 -0.84 16 21 C -0.16 -1.88 10.11 22.36 0.23 -1.66 16 22 C 0.08 1.13 11.18 84.69 0.95 2.08 16 23 N -0.51 -10.15 10.36 -195.85 -2.03 -12.17 16 24 C 0.09 1.61 10.86 84.67 0.92 2.53 16 25 H 0.01 0.38 7.42 -2.39 -0.02 0.37 16 26 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 27 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 30 H 0.07 2.39 7.86 -2.39 -0.02 2.38 16 31 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 32 H 0.04 1.80 7.42 -2.39 -0.02 1.78 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.28 8.07 -2.39 -0.02 1.26 16 35 H 0.10 1.07 6.44 -2.39 -0.02 1.05 16 36 H 0.12 1.60 7.40 -2.39 -0.02 1.58 16 37 H 0.12 1.53 8.11 -2.39 -0.02 1.51 16 38 H 0.07 1.58 8.05 -2.38 -0.02 1.56 16 39 H 0.07 1.59 8.05 -2.39 -0.02 1.58 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -77.88 359.24 4.47 -73.41 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.98 Total: 5.25 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 7.87 Total: 19.60 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -6.36 Total: -123.02 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -77.88 4.47 -73.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496739048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.661 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds