Wall clock time and date at job start Tue Mar 31 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47149 * 2 1 4 4 C 1.46499 * 120.00238 * 270.00593 * 3 2 1 5 5 C 1.53005 * 109.47157 * 269.99789 * 4 3 2 6 6 N 1.46494 * 109.47489 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00365 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99745 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00298 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47171 * 60.00302 * 11 9 7 13 13 H 1.48495 * 109.47381 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47531 * 300.00519 * 11 9 7 15 15 C 1.34778 * 119.99613 * 90.00297 * 3 2 1 16 16 O 1.21287 * 119.99722 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00016 * 0.02562 * 15 3 2 18 18 C 1.53003 * 109.46895 * 179.97438 * 17 15 3 19 19 C 1.50703 * 109.46890 * 179.97438 * 18 17 15 20 20 C 1.38654 * 120.78409 * 90.00032 * 19 18 17 21 21 C 1.38209 * 119.15786 * 180.02562 * 20 19 18 22 22 N 1.31870 * 120.76375 * 0.26353 * 21 20 19 23 23 C 1.31872 * 121.72489 * 359.46946 * 22 21 20 24 24 C 1.38200 * 120.76402 * 0.52682 * 23 22 21 25 25 H 1.08995 * 109.47450 * 59.99459 * 1 2 3 26 26 H 1.08994 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46560 * 299.99518 * 1 2 3 28 28 H 1.09006 * 109.46560 * 240.00482 * 2 1 3 29 29 H 1.08995 * 109.47450 * 120.00541 * 2 1 3 30 30 H 1.08995 * 109.47494 * 29.99504 * 4 3 2 31 31 H 1.09004 * 109.47240 * 150.00436 * 4 3 2 32 32 H 1.09000 * 109.46924 * 300.00586 * 5 4 3 33 33 H 1.09009 * 109.46758 * 59.99825 * 5 4 3 34 34 H 0.97002 * 120.00011 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00518 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47192 * 59.99937 * 17 15 3 37 37 H 1.09002 * 109.46598 * 299.99576 * 17 15 3 38 38 H 1.08996 * 109.46980 * 60.00140 * 18 17 15 39 39 H 1.08997 * 109.47418 * 299.99880 * 18 17 15 40 40 H 1.07995 * 120.42251 * 0.04566 * 20 19 18 41 41 H 1.08002 * 119.61346 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.61160 * 180.27376 * 23 22 21 43 43 H 1.08004 * 120.41549 * 179.76941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7105 6 7 3.9518 2.5227 -2.9788 7 6 5.1838 2.4499 -3.5721 8 1 5.9753 1.8826 -3.1051 9 6 5.4151 3.1044 -4.7742 10 7 4.4504 3.7953 -5.3435 11 14 7.0959 3.0056 -5.5830 12 1 7.4204 1.5869 -5.8788 13 1 7.0836 3.7849 -6.8470 14 1 8.1204 3.5668 -4.6660 15 6 2.2430 2.0164 1.1673 16 8 2.6478 3.1598 1.1673 17 6 1.9924 1.3057 2.4723 18 6 2.3244 2.2429 3.6353 19 6 2.0732 1.5324 4.9404 20 6 3.0779 0.8004 5.5547 21 6 2.8105 0.1617 6.7508 22 7 1.6160 0.2386 7.3042 23 6 0.6386 0.9297 6.7509 24 6 0.8320 1.5946 5.5549 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 4.3883 2.2155 -0.9508 33 1 3.8744 0.7622 -1.8409 34 1 3.2408 3.0319 -3.3985 35 1 4.6121 4.2530 -6.1833 36 1 2.6230 0.4185 2.5298 37 1 0.9445 1.0113 2.5302 38 1 1.6942 3.1304 3.5780 39 1 3.3723 2.5371 3.5772 40 1 4.0570 0.7305 5.1044 41 1 3.5875 -0.4108 7.2355 42 1 -0.3254 0.9732 7.2361 43 1 0.0265 2.1559 5.1049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497414246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:08 Heat of formation + Delta-G solvation = 1.693521 kcal Electronic energy + Delta-G solvation = -22402.253488 eV Core-core repulsion = 19061.463715 eV Total energy + Delta-G solvation = -3340.789773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55683 -39.84514 -36.34204 -35.05937 -34.54869 -31.92270 -31.49909 -30.81780 -30.32228 -27.78523 -25.46627 -23.76045 -23.71624 -23.28114 -21.93613 -21.22199 -18.87998 -17.50419 -17.10952 -16.77792 -16.48010 -16.07457 -15.84581 -15.47223 -14.68359 -14.27238 -14.09774 -13.97310 -13.88593 -13.78362 -13.48746 -13.04467 -13.00173 -12.67416 -12.55765 -12.44405 -12.06479 -11.85454 -11.41052 -11.27732 -11.08380 -10.97417 -10.88585 -10.65885 -10.14438 -9.96175 -9.79150 -9.75654 -9.56032 -9.46462 -8.86432 -8.54353 -6.92918 -5.75551 -3.04865 0.82689 0.92829 2.70492 3.02834 3.45157 3.49214 3.50521 3.51689 4.15341 4.20810 4.44377 4.61509 4.64399 4.74289 4.79753 4.83421 4.87091 4.88713 5.06739 5.21080 5.27489 5.35122 5.42391 5.51428 5.55515 5.59946 5.62958 5.65596 5.71479 5.82058 5.87420 6.01826 6.05317 6.10298 6.14707 6.40292 6.56036 6.74200 6.91150 7.49690 7.66769 7.70068 8.27083 8.43054 9.53726 10.10036 10.45047 11.47328 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.002661 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.950789 B =10519.954372 C =11057.843740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.607 5.607 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.286 1.286 15 C 0.510 3.490 16 O -0.533 6.533 17 C -0.132 4.132 18 C -0.070 4.070 19 C -0.034 4.034 20 C -0.170 4.170 21 C 0.099 3.901 22 N -0.492 5.492 23 C 0.098 3.902 24 C -0.171 4.171 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.022 0.978 33 H 0.017 0.983 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.412 -9.726 21.701 25.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.341 5.341 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.298 3.702 16 O -0.410 6.410 17 C -0.172 4.172 18 C -0.108 4.108 19 C -0.042 4.042 20 C -0.190 4.190 21 C -0.058 4.058 22 N -0.202 5.202 23 C -0.059 4.059 24 C -0.190 4.190 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.154 0.846 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.179 -9.584 22.436 26.435 hybrid contribution 0.816 0.444 -1.529 1.789 sum -9.363 -9.140 20.906 24.663 Atomic orbital electron populations 1.22218 0.95929 1.02214 1.02601 1.21595 0.94330 0.82664 1.03536 1.47962 1.65548 1.14208 1.06336 1.21694 0.98096 0.98389 0.83310 1.20897 0.92778 0.95427 0.89385 1.42203 1.12906 1.60730 1.21669 1.19156 0.89318 1.26146 1.02371 0.91278 1.24749 0.97863 1.00327 0.98047 1.69645 1.31661 1.37292 1.19640 0.86236 0.83738 0.77365 0.78653 1.21260 1.21631 1.21230 1.20547 0.77580 0.86805 0.85296 1.90746 1.45039 1.17903 1.87271 1.21668 1.03874 0.99699 0.91955 1.20419 1.04424 0.97427 0.88532 1.20394 0.93277 0.94612 0.95941 1.22142 1.00529 0.99037 0.97253 1.22778 0.94077 0.96341 0.92601 1.67679 1.00963 1.17320 1.34192 1.22764 0.97983 0.92511 0.92617 1.22106 0.97793 1.01832 0.97302 0.91940 0.91501 0.92640 0.89739 0.90535 0.90586 0.89751 0.96010 0.96532 0.78274 0.93422 0.88792 0.88865 0.89562 0.89425 0.84612 0.82782 0.82837 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.10 0.98 5.93 -4.04 -0.02 0.95 16 3 N -0.61 -8.19 2.47 -173.68 -0.43 -8.62 16 4 C 0.11 1.83 5.52 -4.04 -0.02 1.81 16 5 C 0.14 3.04 6.58 -4.04 -0.03 3.01 16 6 N -0.73 -19.18 5.60 -59.91 -0.34 -19.52 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 11 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 C 0.51 7.11 7.67 -10.98 -0.08 7.03 16 16 O -0.53 -9.82 15.56 5.55 0.09 -9.73 16 17 C -0.13 -1.22 4.23 -27.88 -0.12 -1.34 16 18 C -0.07 -0.66 4.68 -27.88 -0.13 -0.79 16 19 C -0.03 -0.29 5.17 -104.32 -0.54 -0.83 16 20 C -0.17 -1.37 9.82 -39.44 -0.39 -1.76 16 21 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 22 N -0.49 -4.84 10.36 -13.25 -0.14 -4.98 16 23 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 24 C -0.17 -1.32 9.82 -39.45 -0.39 -1.71 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 7.22 -51.93 -0.38 0.05 16 28 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.08 0.57 6.44 -51.93 -0.33 0.24 16 30 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.08 1.61 7.42 -51.93 -0.39 1.22 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 34 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.09 0.74 7.40 -51.93 -0.38 0.36 16 37 H 0.09 0.70 7.19 -51.93 -0.37 0.32 16 38 H 0.09 0.86 8.06 -51.93 -0.42 0.44 16 39 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -35.08 362.00 -8.41 -43.49 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.77 Total: 5.04 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.98 Total: -0.93 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.18 Total: -61.08 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.08 -8.41 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497414246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.181 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds