Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47149 * 2 1 4 4 C 1.46499 * 120.00238 * 270.00593 * 3 2 1 5 5 C 1.53005 * 109.47157 * 269.99789 * 4 3 2 6 6 N 1.46494 * 109.47489 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00365 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99745 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00090 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00298 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99977 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47171 * 60.00302 * 11 9 7 13 13 H 1.48495 * 109.47381 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47531 * 300.00519 * 11 9 7 15 15 C 1.34778 * 119.99613 * 90.00297 * 3 2 1 16 16 O 1.21287 * 119.99722 * 179.97438 * 15 3 2 17 17 C 1.50700 * 120.00016 * 0.02562 * 15 3 2 18 18 C 1.53003 * 109.46895 * 179.97438 * 17 15 3 19 19 C 1.50703 * 109.46890 * 179.97438 * 18 17 15 20 20 C 1.38654 * 120.78409 * 90.00032 * 19 18 17 21 21 C 1.38209 * 119.15786 * 180.02562 * 20 19 18 22 22 N 1.31870 * 120.76375 * 0.26353 * 21 20 19 23 23 C 1.31872 * 121.72489 * 359.46946 * 22 21 20 24 24 C 1.38200 * 120.76402 * 0.52682 * 23 22 21 25 25 H 1.08995 * 109.47450 * 59.99459 * 1 2 3 26 26 H 1.08994 * 109.46932 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46560 * 299.99518 * 1 2 3 28 28 H 1.09006 * 109.46560 * 240.00482 * 2 1 3 29 29 H 1.08995 * 109.47450 * 120.00541 * 2 1 3 30 30 H 1.08995 * 109.47494 * 29.99504 * 4 3 2 31 31 H 1.09004 * 109.47240 * 150.00436 * 4 3 2 32 32 H 1.09000 * 109.46924 * 300.00586 * 5 4 3 33 33 H 1.09009 * 109.46758 * 59.99825 * 5 4 3 34 34 H 0.97002 * 120.00011 * 0.02562 * 6 5 4 35 35 H 0.96996 * 120.00518 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.47192 * 59.99937 * 17 15 3 37 37 H 1.09002 * 109.46598 * 299.99576 * 17 15 3 38 38 H 1.08996 * 109.46980 * 60.00140 * 18 17 15 39 39 H 1.08997 * 109.47418 * 299.99880 * 18 17 15 40 40 H 1.07995 * 120.42251 * 0.04566 * 20 19 18 41 41 H 1.08002 * 119.61346 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.61160 * 180.27376 * 23 22 21 43 43 H 1.08004 * 120.41549 * 179.76941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7105 6 7 3.9518 2.5227 -2.9788 7 6 5.1838 2.4499 -3.5721 8 1 5.9753 1.8826 -3.1051 9 6 5.4151 3.1044 -4.7742 10 7 4.4504 3.7953 -5.3435 11 14 7.0959 3.0056 -5.5830 12 1 7.4204 1.5869 -5.8788 13 1 7.0836 3.7849 -6.8470 14 1 8.1204 3.5668 -4.6660 15 6 2.2430 2.0164 1.1673 16 8 2.6478 3.1598 1.1673 17 6 1.9924 1.3057 2.4723 18 6 2.3244 2.2429 3.6353 19 6 2.0732 1.5324 4.9404 20 6 3.0779 0.8004 5.5547 21 6 2.8105 0.1617 6.7508 22 7 1.6160 0.2386 7.3042 23 6 0.6386 0.9297 6.7509 24 6 0.8320 1.5946 5.5549 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 4.3883 2.2155 -0.9508 33 1 3.8744 0.7622 -1.8409 34 1 3.2408 3.0319 -3.3985 35 1 4.6121 4.2530 -6.1833 36 1 2.6230 0.4185 2.5298 37 1 0.9445 1.0113 2.5302 38 1 1.6942 3.1304 3.5780 39 1 3.3723 2.5371 3.5772 40 1 4.0570 0.7305 5.1044 41 1 3.5875 -0.4108 7.2355 42 1 -0.3254 0.9732 7.2361 43 1 0.0265 2.1559 5.1049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497414246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -20.923334 kcal Electronic energy + Delta-G solvation = -22403.234229 eV Core-core repulsion = 19061.463715 eV Total energy + Delta-G solvation = -3341.770513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32553 -40.80114 -37.62132 -36.38182 -35.77060 -33.66045 -32.07268 -31.82138 -31.43247 -29.26694 -26.61372 -25.28892 -24.34163 -24.23413 -23.29062 -22.26138 -20.02276 -19.18137 -18.32364 -17.52845 -17.26577 -17.18688 -16.66800 -16.41879 -16.38060 -15.42918 -15.36274 -15.21336 -14.86551 -14.74047 -14.62924 -14.46975 -14.18452 -13.55373 -13.44438 -13.20203 -13.06200 -12.90397 -12.80619 -12.64540 -12.60325 -12.28695 -12.18507 -12.08928 -11.88721 -11.79996 -10.99165 -10.91368 -10.45726 -10.37894 -10.04065 -9.72869 -9.08624 -7.99289 -5.30368 0.25073 0.29983 1.44935 1.49188 1.55247 1.62281 1.95936 2.54636 2.90430 3.33552 3.38896 3.65129 3.82668 3.85572 3.96472 4.04079 4.14454 4.20383 4.20846 4.23893 4.25413 4.29151 4.44507 4.54545 4.57382 4.59886 4.76916 4.80964 4.89260 4.96704 4.99038 5.05676 5.08453 5.09795 5.14796 5.38961 5.41694 5.47532 5.56838 5.83178 6.21998 6.43498 7.07631 7.18188 7.28028 7.99886 8.25066 9.23891 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.002661 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.950789 B =10519.954372 C =11057.843740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.606 5.606 4 C 0.123 3.877 5 C 0.150 3.850 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.273 1.273 13 H -0.292 1.292 14 H -0.280 1.280 15 C 0.504 3.496 16 O -0.587 6.587 17 C -0.118 4.118 18 C -0.064 4.064 19 C -0.040 4.040 20 C -0.173 4.173 21 C 0.089 3.911 22 N -0.518 5.518 23 C 0.090 3.910 24 C -0.170 4.170 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.000 1.000 33 H 0.029 0.971 34 H 0.375 0.625 35 H 0.254 0.746 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.148 0.852 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 -11.721 22.757 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.338 5.338 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.199 1.199 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.294 3.706 16 O -0.467 6.467 17 C -0.158 4.158 18 C -0.102 4.102 19 C -0.049 4.049 20 C -0.193 4.193 21 C -0.067 4.067 22 N -0.228 5.228 23 C -0.066 4.066 24 C -0.190 4.190 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.207 0.793 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.166 0.834 41 H 0.190 0.810 42 H 0.192 0.808 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.501 -11.642 23.531 28.276 hybrid contribution 0.887 1.043 -1.793 2.256 sum -9.614 -10.599 21.738 26.026 Atomic orbital electron populations 1.22180 0.94443 1.03621 1.02203 1.21923 0.95524 0.80236 1.04919 1.48074 1.65195 1.15659 1.04864 1.21276 0.95694 0.97563 0.85590 1.20946 0.94957 0.95105 0.86754 1.42400 1.12071 1.61110 1.23114 1.19553 0.90350 1.25836 1.02663 0.90891 1.25641 1.01799 1.00337 0.98828 1.69806 1.33735 1.38329 1.19937 0.85146 0.79082 0.77813 0.77304 1.19864 1.21752 1.20625 1.21436 0.76189 0.86325 0.86681 1.90725 1.47464 1.20475 1.88072 1.21669 1.05913 0.99531 0.88671 1.20289 1.03243 0.97341 0.89307 1.20343 0.93934 0.94966 0.95621 1.22304 1.01006 0.98746 0.97232 1.23120 0.94245 0.96520 0.92777 1.67704 1.01785 1.18253 1.35063 1.23156 0.98586 0.92098 0.92807 1.22298 0.97980 1.01557 0.97127 0.93503 0.89137 0.91930 0.89957 0.87599 0.89163 0.92371 0.98228 0.95281 0.79299 0.93749 0.86614 0.86178 0.90510 0.91021 0.83432 0.80970 0.80767 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 71.98 0.74 -1.44 16 2 C 0.10 1.57 5.93 86.38 0.51 2.08 16 3 N -0.61 -15.72 2.47 -821.80 -2.03 -17.75 16 4 C 0.12 4.23 5.52 86.38 0.48 4.71 16 5 C 0.15 6.43 6.58 86.38 0.57 7.00 16 6 N -0.74 -39.83 5.60 -343.45 -1.92 -41.76 16 7 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 8 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 10 N -0.97 -60.35 13.06 21.65 0.28 -60.06 16 11 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 15 C 0.50 13.71 7.67 87.66 0.67 14.38 16 16 O -0.59 -22.26 15.56 -3.05 -0.05 -22.31 16 17 C -0.12 -1.92 4.23 29.85 0.13 -1.79 16 18 C -0.06 -1.13 4.68 29.85 0.14 -0.99 16 19 C -0.04 -0.62 5.17 -19.67 -0.10 -0.72 16 20 C -0.17 -2.49 9.82 22.36 0.22 -2.27 16 21 C 0.09 1.35 11.18 84.68 0.95 2.30 16 22 N -0.52 -9.37 10.36 -195.84 -2.03 -11.40 16 23 C 0.09 1.29 11.18 84.68 0.95 2.24 16 24 C -0.17 -2.28 9.82 22.36 0.22 -2.06 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.74 7.22 -2.38 -0.02 0.73 16 28 H 0.08 1.42 8.07 -2.38 -0.02 1.40 16 29 H 0.11 1.15 6.44 -2.39 -0.02 1.13 16 30 H 0.09 2.83 8.07 -2.39 -0.02 2.82 16 31 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 32 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.38 21.06 7.67 -92.71 -0.71 20.35 16 35 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.12 1.43 7.40 -2.39 -0.02 1.41 16 37 H 0.12 1.35 7.19 -2.39 -0.02 1.34 16 38 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 39 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -77.26 362.00 3.33 -73.93 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.28 Total: 24.71 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.77 Total: 5.72 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -5.70 Total: -130.97 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.26 3.33 -73.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497414246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.007 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds