Wall clock time and date at job start Tue Mar 31 2020 07:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00001 * 2 1 4 4 C 1.53008 * 109.46836 * 269.99843 * 3 2 1 5 5 C 1.53006 * 109.46882 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.46880 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00142 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99567 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47536 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47058 * 120.00112 * 11 9 7 14 14 H 1.48500 * 109.47079 * 239.99999 * 11 9 7 15 15 C 1.34778 * 119.99965 * 179.97438 * 2 1 3 16 16 O 1.21282 * 119.99680 * 180.02562 * 15 2 1 17 17 C 1.50696 * 120.00104 * 359.97438 * 15 2 1 18 18 C 1.52999 * 109.46953 * 180.02562 * 17 15 2 19 19 C 1.50706 * 109.47163 * 180.02562 * 18 17 15 20 20 C 1.38225 * 119.61903 * 124.72524 * 19 18 17 21 21 C 1.38628 * 119.15868 * 179.75305 * 20 19 18 22 22 C 1.38681 * 118.42043 * 0.51112 * 21 20 19 23 23 C 1.38179 * 119.15955 * 359.73317 * 22 21 20 24 24 N 1.31858 * 119.61572 * 305.00069 * 19 18 17 25 25 H 1.08996 * 109.47159 * 270.00087 * 1 2 3 26 26 H 1.08999 * 109.46986 * 30.00539 * 1 2 3 27 27 H 1.09002 * 109.46980 * 150.00446 * 1 2 3 28 28 H 1.08998 * 109.47277 * 29.99600 * 3 2 1 29 29 H 1.09000 * 109.47832 * 150.00081 * 3 2 1 30 30 H 1.08995 * 109.47239 * 299.99476 * 4 3 2 31 31 H 1.08996 * 109.46969 * 60.00005 * 4 3 2 32 32 H 1.08998 * 109.47401 * 299.99861 * 5 4 3 33 33 H 1.09005 * 109.46989 * 60.00263 * 5 4 3 34 34 H 0.97004 * 120.00367 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99943 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47093 * 60.00325 * 17 15 2 37 37 H 1.08995 * 109.47083 * 299.99885 * 17 15 2 38 38 H 1.08997 * 109.47394 * 59.99888 * 18 17 15 39 39 H 1.09004 * 109.47644 * 299.99960 * 18 17 15 40 40 H 1.07994 * 120.42134 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.79027 * 180.26248 * 21 20 19 42 42 H 1.07997 * 120.41814 * 179.70894 * 22 21 20 43 43 H 1.08004 * 119.61107 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2170 3.0357 -1.4426 6 7 3.4617 3.4582 -2.8238 7 6 4.1349 4.6241 -3.0741 8 1 4.4859 5.2319 -2.2532 9 6 4.3663 5.0247 -4.3829 10 7 3.9382 4.2843 -5.3832 11 14 5.2841 6.6155 -4.7243 12 1 5.6545 7.2591 -3.4383 13 1 6.5138 6.3202 -5.5028 14 1 4.4132 7.5320 -5.5032 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0017 18 6 2.3797 -3.6352 0.0027 19 6 1.6263 -4.9404 0.0033 20 6 1.8779 -5.8748 -0.9837 21 6 1.1830 -7.0743 -0.9711 22 6 0.2491 -7.2856 0.0321 23 6 0.0477 -6.3028 0.9823 24 7 0.7307 -5.1754 0.9421 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1500 1.1385 0.5138 30 1 3.0416 0.9507 -1.9563 31 1 1.5001 1.8406 -1.9564 32 1 2.6276 3.7952 -0.9290 33 1 4.1694 2.9058 -0.9286 34 1 3.1468 2.9121 -3.5611 35 1 4.1002 4.5640 -6.2978 36 1 0.7585 -2.5307 -0.8880 37 1 0.7592 -2.5294 0.8919 38 1 3.0064 -3.5766 0.8926 39 1 3.0064 -3.5783 -0.8873 40 1 2.6090 -5.6745 -1.7528 41 1 1.3618 -7.8247 -1.7269 42 1 -0.3138 -8.2065 0.0700 43 1 -0.6775 -6.4599 1.7671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498592342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:08 Heat of formation + Delta-G solvation = 1.236756 kcal Electronic energy + Delta-G solvation = -21932.689630 eV Core-core repulsion = 18591.880050 eV Total energy + Delta-G solvation = -3340.809580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60647 -39.79094 -36.20829 -34.77137 -34.37130 -32.68472 -32.24945 -30.61586 -29.53588 -26.89091 -26.15137 -24.48955 -23.80418 -22.71370 -21.64704 -20.84508 -19.02799 -17.51206 -17.01929 -16.80571 -16.57964 -16.16037 -15.64661 -15.59818 -14.66922 -14.46354 -14.42737 -13.87794 -13.72398 -13.54071 -13.18734 -13.13159 -12.86404 -12.74403 -12.56621 -12.22027 -11.89214 -11.83950 -11.75538 -11.32818 -10.88851 -10.83166 -10.68892 -10.34538 -10.21927 -10.01501 -9.79116 -9.72267 -9.64883 -9.27497 -8.82866 -8.60800 -6.86754 -5.71824 -3.00231 0.75913 0.93391 2.67826 3.00714 3.46229 3.46660 3.51910 3.54537 3.94454 4.30077 4.49192 4.63250 4.64335 4.72886 4.76026 4.91752 4.93283 5.05666 5.21567 5.23344 5.32630 5.38996 5.43779 5.50045 5.60752 5.61351 5.64504 5.75937 5.83454 5.88130 5.91582 5.99088 6.14677 6.35301 6.36592 6.44435 6.59667 6.91943 6.94510 7.39682 7.66266 7.74971 8.21710 8.47287 9.58058 10.17145 10.51754 11.51433 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029010 B = 0.002275 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.944290 B =12304.481522 C =12808.936400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.616 5.616 3 C 0.118 3.882 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C 0.511 3.489 16 O -0.537 6.537 17 C -0.128 4.128 18 C -0.056 4.056 19 C 0.133 3.867 20 C -0.168 4.168 21 C -0.073 4.073 22 C -0.182 4.182 23 C 0.101 3.899 24 N -0.483 5.483 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 -23.524 13.174 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.350 5.350 3 C -0.004 4.004 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.213 4.213 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.299 3.701 16 O -0.414 6.414 17 C -0.169 4.169 18 C -0.094 4.094 19 C -0.004 4.004 20 C -0.188 4.188 21 C -0.099 4.099 22 C -0.202 4.202 23 C -0.056 4.056 24 N -0.192 5.192 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.331 -22.718 13.853 28.921 hybrid contribution 0.311 -0.032 -1.273 1.311 sum -11.020 -22.750 12.580 28.236 Atomic orbital electron populations 1.21812 0.79623 1.03454 1.01725 1.47914 1.06997 1.06427 1.73637 1.21487 0.97497 0.83544 0.97912 1.22050 1.00991 0.98910 0.95768 1.20548 0.96062 0.91936 0.88661 1.42368 1.68309 1.25959 1.01139 1.19307 1.27572 0.98091 0.91829 0.91076 1.24761 1.01845 0.99116 0.95578 1.69678 1.51676 1.38914 0.98104 0.86092 0.79158 0.83076 0.77744 1.20535 1.21869 1.21911 1.20661 0.88085 0.85387 0.75980 1.90723 1.13905 1.87372 1.49352 1.21574 0.99107 0.91395 1.04780 1.20314 0.96232 0.87849 1.04980 1.21338 0.92948 0.95972 0.90137 1.22069 1.01661 0.94740 1.00318 1.21622 0.94098 0.96746 0.97458 1.22142 1.00166 1.01175 0.96730 1.22761 0.96758 0.88795 0.97291 1.67485 1.06412 1.21600 1.23740 0.92556 0.90645 0.91155 0.90592 0.89778 0.91610 0.92081 0.96409 0.96191 0.78343 0.93614 0.89150 0.88000 0.89028 0.89296 0.84528 0.84820 0.84906 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.24 59.85 0.61 1.28 16 2 N -0.62 -7.68 2.87 -181.57 -0.52 -8.21 16 3 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 4 C -0.14 -2.42 5.65 -26.72 -0.15 -2.57 16 5 C 0.16 3.32 6.26 -4.04 -0.03 3.30 16 6 N -0.73 -19.71 5.60 -59.91 -0.34 -20.04 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 10 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 11 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 15 C 0.51 6.92 7.67 -10.99 -0.08 6.84 16 16 O -0.54 -9.40 15.56 5.56 0.09 -9.31 16 17 C -0.13 -1.28 4.11 -27.89 -0.11 -1.40 16 18 C -0.06 -0.57 4.90 -27.88 -0.14 -0.70 16 19 C 0.13 1.29 6.18 -82.58 -0.51 0.77 16 20 C -0.17 -1.36 9.71 -39.44 -0.38 -1.75 16 21 C -0.07 -0.49 10.18 -39.27 -0.40 -0.89 16 22 C -0.18 -1.15 10.11 -39.44 -0.40 -1.55 16 23 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 24 N -0.48 -4.78 9.88 -9.47 -0.09 -4.87 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.63 8.07 -51.93 -0.42 0.22 16 27 H 0.07 0.50 6.44 -51.93 -0.33 0.17 16 28 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.79 7.67 -40.82 -0.31 10.48 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 37 H 0.10 0.93 7.91 -51.93 -0.41 0.52 16 38 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.09 0.91 7.83 -51.93 -0.41 0.51 16 40 H 0.14 0.91 7.95 -52.49 -0.42 0.49 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -35.74 362.83 -8.59 -44.33 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.84 Total: 5.24 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.06 Total: -2.13 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.23 Total: -61.61 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.74 -8.59 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498592342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.562 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds