Wall clock time and date at job start Tue Mar 31 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00001 * 2 1 4 4 C 1.53008 * 109.46836 * 269.99843 * 3 2 1 5 5 C 1.53006 * 109.46882 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.46880 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00142 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99567 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00060 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47536 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47058 * 120.00112 * 11 9 7 14 14 H 1.48500 * 109.47079 * 239.99999 * 11 9 7 15 15 C 1.34778 * 119.99965 * 179.97438 * 2 1 3 16 16 O 1.21282 * 119.99680 * 180.02562 * 15 2 1 17 17 C 1.50696 * 120.00104 * 359.97438 * 15 2 1 18 18 C 1.52999 * 109.46953 * 180.02562 * 17 15 2 19 19 C 1.50706 * 109.47163 * 180.02562 * 18 17 15 20 20 C 1.38225 * 119.61903 * 124.72524 * 19 18 17 21 21 C 1.38628 * 119.15868 * 179.75305 * 20 19 18 22 22 C 1.38681 * 118.42043 * 0.51112 * 21 20 19 23 23 C 1.38179 * 119.15955 * 359.73317 * 22 21 20 24 24 N 1.31858 * 119.61572 * 305.00069 * 19 18 17 25 25 H 1.08996 * 109.47159 * 270.00087 * 1 2 3 26 26 H 1.08999 * 109.46986 * 30.00539 * 1 2 3 27 27 H 1.09002 * 109.46980 * 150.00446 * 1 2 3 28 28 H 1.08998 * 109.47277 * 29.99600 * 3 2 1 29 29 H 1.09000 * 109.47832 * 150.00081 * 3 2 1 30 30 H 1.08995 * 109.47239 * 299.99476 * 4 3 2 31 31 H 1.08996 * 109.46969 * 60.00005 * 4 3 2 32 32 H 1.08998 * 109.47401 * 299.99861 * 5 4 3 33 33 H 1.09005 * 109.46989 * 60.00263 * 5 4 3 34 34 H 0.97004 * 120.00367 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99943 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47093 * 60.00325 * 17 15 2 37 37 H 1.08995 * 109.47083 * 299.99885 * 17 15 2 38 38 H 1.08997 * 109.47394 * 59.99888 * 18 17 15 39 39 H 1.09004 * 109.47644 * 299.99960 * 18 17 15 40 40 H 1.07994 * 120.42134 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.79027 * 180.26248 * 21 20 19 42 42 H 1.07997 * 120.41814 * 179.70894 * 22 21 20 43 43 H 1.08004 * 119.61107 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2170 3.0357 -1.4426 6 7 3.4617 3.4582 -2.8238 7 6 4.1349 4.6241 -3.0741 8 1 4.4859 5.2319 -2.2532 9 6 4.3663 5.0247 -4.3829 10 7 3.9382 4.2843 -5.3832 11 14 5.2841 6.6155 -4.7243 12 1 5.6545 7.2591 -3.4383 13 1 6.5138 6.3202 -5.5028 14 1 4.4132 7.5320 -5.5032 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0017 18 6 2.3797 -3.6352 0.0027 19 6 1.6263 -4.9404 0.0033 20 6 1.8779 -5.8748 -0.9837 21 6 1.1830 -7.0743 -0.9711 22 6 0.2491 -7.2856 0.0321 23 6 0.0477 -6.3028 0.9823 24 7 0.7307 -5.1754 0.9421 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1500 1.1385 0.5138 30 1 3.0416 0.9507 -1.9563 31 1 1.5001 1.8406 -1.9564 32 1 2.6276 3.7952 -0.9290 33 1 4.1694 2.9058 -0.9286 34 1 3.1468 2.9121 -3.5611 35 1 4.1002 4.5640 -6.2978 36 1 0.7585 -2.5307 -0.8880 37 1 0.7592 -2.5294 0.8919 38 1 3.0064 -3.5766 0.8926 39 1 3.0064 -3.5783 -0.8873 40 1 2.6090 -5.6745 -1.7528 41 1 1.3618 -7.8247 -1.7269 42 1 -0.3138 -8.2065 0.0700 43 1 -0.6775 -6.4599 1.7671 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498592342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:07 Heat of formation + Delta-G solvation = -22.126601 kcal Electronic energy + Delta-G solvation = -21933.702741 eV Core-core repulsion = 18591.880050 eV Total energy + Delta-G solvation = -3341.822691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30272 -40.74270 -37.59344 -36.39965 -35.17339 -34.04126 -33.24306 -31.90512 -30.79255 -27.94464 -27.27183 -25.86508 -24.46910 -24.18038 -22.67591 -22.20990 -20.04623 -19.17229 -18.34350 -17.51045 -17.27809 -17.21622 -16.68064 -16.42748 -16.25396 -15.84543 -15.52451 -15.21591 -15.05387 -14.51474 -14.46743 -14.09937 -13.72944 -13.59826 -13.52198 -13.38337 -13.29783 -12.86893 -12.78235 -12.66927 -12.46889 -12.39265 -12.14274 -12.04171 -11.83177 -11.80066 -10.97627 -10.87369 -10.75423 -10.34282 -9.86944 -9.67029 -9.04622 -7.98053 -5.28191 0.19126 0.39283 1.45738 1.47675 1.57974 1.62280 2.03533 2.54609 2.87852 3.29456 3.35382 3.59739 3.83899 3.85978 3.99919 4.08290 4.14706 4.17457 4.24579 4.28464 4.33450 4.37621 4.52534 4.56604 4.65130 4.70134 4.74710 4.76109 4.85079 4.89527 4.95730 4.97400 5.09185 5.28129 5.28797 5.30352 5.32317 5.46640 5.55660 5.83327 6.24267 6.40360 7.07451 7.17643 7.29566 8.04555 8.28310 9.26096 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029010 B = 0.002275 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.944290 B =12304.481522 C =12808.936400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.616 5.616 3 C 0.126 3.874 4 C -0.120 4.120 5 C 0.154 3.846 6 N -0.749 5.749 7 C -0.248 4.248 8 H 0.078 0.922 9 C -0.080 4.080 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.289 1.289 15 C 0.503 3.497 16 O -0.586 6.586 17 C -0.114 4.114 18 C -0.051 4.051 19 C 0.114 3.886 20 C -0.180 4.180 21 C -0.077 4.077 22 C -0.176 4.176 23 C 0.088 3.912 24 N -0.507 5.507 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.014 0.986 34 H 0.372 0.628 35 H 0.252 0.748 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -24.215 14.017 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C 0.002 3.998 4 C -0.159 4.159 5 C 0.027 3.973 6 N -0.392 5.392 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.272 4.272 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.189 1.189 13 H -0.220 1.220 14 H -0.216 1.216 15 C 0.293 3.707 16 O -0.466 6.466 17 C -0.153 4.153 18 C -0.090 4.090 19 C -0.022 4.022 20 C -0.200 4.200 21 C -0.102 4.102 22 C -0.196 4.196 23 C -0.069 4.069 24 N -0.217 5.217 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.204 0.796 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.181 0.819 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.070 -23.409 14.744 30.597 hybrid contribution 0.787 0.095 -1.481 1.680 sum -12.283 -23.314 13.262 29.501 Atomic orbital electron populations 1.22098 0.76868 1.04618 1.03529 1.48025 1.08676 1.05386 1.72713 1.21302 0.97813 0.85242 0.95416 1.21851 1.00042 0.96083 0.97963 1.20711 0.96452 0.94096 0.85999 1.42618 1.68205 1.25422 1.02951 1.19730 1.27245 0.98794 0.92233 0.90428 1.25678 1.03280 1.02817 0.95436 1.69839 1.53247 1.40853 0.98313 0.84984 0.77444 0.78844 0.77936 1.18882 1.21996 1.21627 1.21333 0.87729 0.86706 0.74924 1.90698 1.16156 1.88113 1.51660 1.21510 0.98718 0.89116 1.05996 1.20191 0.96202 0.88878 1.03717 1.21210 0.93812 0.95999 0.91229 1.22240 1.02203 0.95254 1.00261 1.21988 0.93580 0.96577 0.98102 1.22505 0.99594 1.01794 0.95662 1.23244 0.96868 0.88450 0.98291 1.67430 1.07077 1.23073 1.24135 0.90379 0.90098 0.89467 0.87686 0.91545 0.94398 0.91431 0.94804 0.96835 0.79646 0.93898 0.87541 0.86711 0.90810 0.90162 0.83889 0.82330 0.81935 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 10.24 127.77 1.31 2.34 16 2 N -0.62 -14.74 2.87 -846.75 -2.43 -17.17 16 3 C 0.13 3.49 5.41 86.38 0.47 3.96 16 4 C -0.12 -4.23 5.65 30.60 0.17 -4.06 16 5 C 0.15 6.58 6.26 86.38 0.54 7.12 16 6 N -0.75 -40.78 5.60 -343.44 -1.92 -42.71 16 7 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 10 N -0.97 -61.62 13.06 21.65 0.28 -61.33 16 11 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 15 C 0.50 13.74 7.67 87.66 0.67 14.41 16 16 O -0.59 -21.48 15.56 -3.04 -0.05 -21.53 16 17 C -0.11 -2.22 4.11 29.85 0.12 -2.10 16 18 C -0.05 -1.09 4.90 29.85 0.15 -0.94 16 19 C 0.11 2.18 6.18 42.55 0.26 2.44 16 20 C -0.18 -2.80 9.71 22.36 0.22 -2.59 16 21 C -0.08 -0.87 10.18 22.47 0.23 -0.64 16 22 C -0.18 -1.77 10.11 22.36 0.23 -1.54 16 23 C 0.09 1.17 11.18 84.67 0.95 2.12 16 24 N -0.51 -9.58 9.88 -183.88 -1.82 -11.40 16 25 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 27 H 0.09 1.00 6.44 -2.39 -0.02 0.99 16 28 H 0.10 2.32 8.07 -2.39 -0.02 2.30 16 29 H 0.07 2.10 7.42 -2.39 -0.02 2.08 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.37 21.51 7.67 -92.71 -0.71 20.79 16 35 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.11 1.74 7.40 -2.39 -0.02 1.72 16 37 H 0.11 1.96 7.91 -2.39 -0.02 1.94 16 38 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 39 H 0.08 1.77 7.83 -2.39 -0.02 1.76 16 40 H 0.14 1.89 7.95 -2.91 -0.02 1.87 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 42 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 43 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -78.48 362.83 2.99 -75.49 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.28 Total: 26.67 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 6.62 Total: 2.48 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -5.89 Total: -132.62 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -78.48 2.99 -75.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498592342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.366 kcal (2) G-P(sol) polarization free energy of solvation -78.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds