Wall clock time and date at job start Tue Mar 31 2020 07:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36881 * 126.40095 * 2 1 4 4 C 1.34667 * 106.82397 * 179.97438 * 3 2 1 5 5 N 1.34138 * 108.01542 * 359.77330 * 4 3 2 6 6 C 1.30493 * 109.25652 * 0.37293 * 5 4 3 7 7 C 1.50704 * 125.64933 * 179.88899 * 6 5 4 8 8 C 1.52999 * 109.47044 * 269.69451 * 7 6 5 9 9 C 1.50704 * 109.47044 * 179.97438 * 8 7 6 10 10 O 1.21297 * 119.99792 * 353.74924 * 9 8 7 11 11 N 1.34766 * 120.00484 * 173.74834 * 9 8 7 12 12 C 1.37112 * 119.99886 * 5.46251 * 11 9 8 13 13 H 1.07996 * 120.00023 * 227.21127 * 12 11 9 14 14 C 1.38946 * 119.99549 * 47.20813 * 12 11 9 15 15 N 1.31416 * 119.99529 * 203.27120 * 14 12 11 16 16 Si 1.86799 * 120.00482 * 23.27176 * 14 12 11 17 17 H 1.48497 * 109.47082 * 89.48302 * 16 14 12 18 18 H 1.48503 * 109.47172 * 209.48748 * 16 14 12 19 19 H 1.48501 * 109.46932 * 329.48138 * 16 14 12 20 20 C 1.46499 * 120.00625 * 185.46209 * 11 9 8 21 21 C 1.54262 * 110.03395 * 240.40447 * 20 11 9 22 22 C 1.54962 * 104.16207 * 217.13467 * 21 20 11 23 23 C 1.54891 * 102.77883 * 37.88347 * 22 21 20 24 24 C 1.53871 * 110.03572 * 123.18639 * 20 11 9 25 25 H 1.09002 * 109.47313 * 270.02864 * 1 2 3 26 26 H 1.09005 * 109.47117 * 30.03109 * 1 2 3 27 27 H 1.09004 * 109.47558 * 150.02894 * 1 2 3 28 28 H 1.08002 * 126.58534 * 0.02562 * 3 2 1 29 29 H 1.07998 * 125.99222 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46764 * 149.69327 * 7 6 5 31 31 H 1.09001 * 109.46990 * 29.69416 * 7 6 5 32 32 H 1.08993 * 109.47419 * 60.00379 * 8 7 6 33 33 H 1.09001 * 109.47198 * 299.99837 * 8 7 6 34 34 H 0.97009 * 119.99780 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.01507 * 1.79221 * 20 11 9 36 36 H 1.08999 * 110.48763 * 335.78035 * 21 20 11 37 37 H 1.08998 * 110.49107 * 98.42284 * 21 20 11 38 38 H 1.09001 * 110.72049 * 279.57398 * 22 21 20 39 39 H 1.09003 * 110.92894 * 156.29528 * 22 21 20 40 40 H 1.08996 * 110.48969 * 203.40556 * 23 22 21 41 41 H 1.09007 * 110.59456 * 80.81784 * 23 22 21 42 42 H 1.09004 * 110.03030 * 238.57733 * 24 20 11 43 43 H 1.09005 * 110.03161 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6505 0.0006 5 7 3.5095 -0.6904 0.0060 6 6 2.2663 -1.0870 0.0007 7 6 1.8018 -2.5207 0.0018 8 6 1.6444 -3.0068 -1.4404 9 6 1.1805 -4.4407 -1.4394 10 8 1.1029 -5.0522 -0.3947 11 7 0.8518 -5.0435 -2.5990 12 6 1.0452 -4.3913 -3.7895 13 1 0.2586 -4.3731 -4.5292 14 6 2.2533 -3.7540 -4.0441 15 7 2.3086 -2.7767 -4.9210 16 14 3.7989 -4.2861 -3.1400 17 1 4.4764 -5.3613 -3.9083 18 1 4.7147 -3.1255 -2.9998 19 1 3.4343 -4.7944 -1.7932 20 6 0.2878 -6.3955 -2.5877 21 6 1.2026 -7.3563 -3.3750 22 6 0.2182 -8.3117 -4.0957 23 6 -0.9437 -7.3687 -4.4956 24 6 -1.0763 -6.4036 -3.2995 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9612 2.1345 0.0004 29 1 4.4368 1.2611 0.0011 30 1 0.8432 -2.5916 0.5158 31 1 2.5365 -3.1403 0.5159 32 1 2.6029 -2.9359 -1.9544 33 1 0.9097 -2.3872 -1.9546 34 1 3.1519 -2.3315 -5.0985 35 1 0.1754 -6.7443 -1.5612 36 1 1.7996 -6.8050 -4.1016 37 1 1.8467 -7.9132 -2.6946 38 1 -0.1317 -9.0891 -3.4164 39 1 0.6798 -8.7523 -4.9794 40 1 -1.8647 -7.9351 -4.6329 41 1 -0.6960 -6.8190 -5.4037 42 1 -1.8507 -6.7571 -2.6186 43 1 -1.3190 -5.4015 -3.6530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519554720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:51 Heat of formation + Delta-G solvation = 27.972047 kcal Electronic energy + Delta-G solvation = -24324.241165 eV Core-core repulsion = 20984.590914 eV Total energy + Delta-G solvation = -3339.650251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80388 -39.33626 -36.99672 -34.18483 -33.80840 -33.05677 -31.77040 -28.79641 -28.10559 -27.27961 -26.74970 -24.70514 -23.85602 -21.11706 -20.12782 -19.94287 -19.36808 -19.12241 -17.20521 -16.55010 -15.92187 -15.81213 -15.36231 -14.84608 -14.61815 -14.03007 -13.86289 -13.77398 -13.35317 -13.13946 -12.86760 -12.64389 -12.63122 -12.43879 -12.27531 -11.92369 -11.64665 -11.04659 -10.99982 -10.80842 -10.76921 -10.58808 -10.50256 -10.21913 -10.08933 -9.87839 -9.70836 -9.65518 -9.35922 -9.02250 -8.63731 -8.05980 -7.60739 -6.52258 -4.18294 2.28228 3.01957 3.14495 3.31543 3.36830 3.43630 3.77007 4.14116 4.38124 4.84040 4.85858 4.87540 5.03790 5.17670 5.22984 5.26524 5.44820 5.47508 5.52429 5.66229 5.76562 5.93929 5.97108 6.04662 6.14726 6.16529 6.18442 6.24235 6.33021 6.41003 6.42837 6.46088 6.57584 6.59460 6.72009 6.81286 6.93478 7.02384 7.04572 7.42740 7.65712 7.77039 8.42484 8.47669 8.95495 9.29823 9.72720 10.56728 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.005346 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.203377 B = 5236.736167 C = 5686.694111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.458 5.458 3 C -0.069 4.069 4 C -0.030 4.030 5 N -0.494 5.494 6 C 0.223 3.777 7 C -0.023 4.023 8 C -0.114 4.114 9 C 0.492 3.508 10 O -0.599 6.599 11 N -0.463 5.463 12 C -0.346 4.346 13 H 0.101 0.899 14 C 0.079 3.921 15 N -0.851 5.851 16 Si 0.848 3.152 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.253 1.253 20 C 0.130 3.870 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.171 0.829 29 H 0.166 0.834 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.276 0.724 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 2.555 4.803 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.201 4.201 4 C -0.178 4.178 5 N -0.212 5.212 6 C -0.040 4.040 7 C -0.062 4.062 8 C -0.154 4.154 9 C 0.283 3.717 10 O -0.484 6.484 11 N -0.183 5.183 12 C -0.473 4.473 13 H 0.118 0.882 14 C -0.130 4.130 15 N -0.485 5.485 16 Si 0.674 3.326 17 H -0.207 1.207 18 H -0.200 1.200 19 H -0.177 1.177 20 C 0.026 3.974 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.164 4.164 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.188 0.812 29 H 0.183 0.817 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.763 1.911 5.197 7.304 hybrid contribution 0.367 0.621 0.021 0.722 sum -4.396 2.532 5.218 7.277 Atomic orbital electron populations 1.22064 0.76820 1.05084 1.03300 1.45298 1.07550 1.06618 1.54610 1.22586 0.91469 0.92361 1.13695 1.22253 0.96272 0.91344 1.07952 1.70272 1.18752 1.11863 1.20332 1.23433 0.85619 0.91063 1.03839 1.19850 1.02354 0.85745 0.98268 1.21529 1.03382 0.95352 0.95164 1.20291 0.79669 0.88337 0.83443 1.90522 1.58924 1.66907 1.32094 1.43808 1.57113 1.11939 1.05466 1.18790 1.00637 1.32240 0.95612 0.88199 1.25539 0.97844 0.94425 0.95153 1.69747 1.27444 1.18143 1.33122 0.87343 0.84078 0.79522 0.81659 1.20711 1.19986 1.17734 1.21650 0.92282 0.84302 0.99143 1.22693 0.98007 0.96701 0.99598 1.22415 0.96606 0.97297 0.99470 1.22267 0.97400 0.97027 0.98798 1.22382 0.96775 1.00549 0.96719 0.90704 0.89686 0.88939 0.81191 0.81663 0.90062 0.88494 0.90067 0.88893 0.91336 0.89878 0.89790 0.92739 0.92293 0.92171 0.92774 0.91380 0.92777 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.79 59.84 0.65 1.42 16 2 N -0.46 -7.05 3.15 -121.28 -0.38 -7.43 16 3 C -0.07 -0.98 11.58 -16.56 -0.19 -1.17 16 4 C -0.03 -0.49 11.87 -17.81 -0.21 -0.70 16 5 N -0.49 -10.02 11.25 -10.81 -0.12 -10.15 16 6 C 0.22 4.21 7.16 -155.41 -1.11 3.10 16 7 C -0.02 -0.44 4.62 -27.88 -0.13 -0.57 16 8 C -0.11 -2.52 3.67 -27.88 -0.10 -2.62 16 9 C 0.49 11.73 5.20 -10.99 -0.06 11.67 16 10 O -0.60 -15.03 15.35 5.54 0.09 -14.95 16 11 N -0.46 -10.77 1.99 -106.55 -0.21 -10.98 16 12 C -0.35 -8.61 7.52 -14.93 -0.11 -8.72 16 13 H 0.10 2.61 7.20 -52.49 -0.38 2.23 16 14 C 0.08 2.05 4.21 -17.47 -0.07 1.98 16 15 N -0.85 -22.99 13.96 55.50 0.77 -22.22 16 16 Si 0.85 21.18 24.58 -169.99 -4.18 17.00 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.25 -6.51 5.46 56.52 0.31 -6.20 16 20 C 0.13 2.66 3.28 -66.82 -0.22 2.44 16 21 C -0.13 -2.50 6.42 -25.03 -0.16 -2.66 16 22 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.21 6.21 -25.62 -0.16 -2.37 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 28 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 31 H 0.10 2.00 8.03 -51.93 -0.42 1.58 16 32 H 0.08 1.99 3.15 -51.93 -0.16 1.82 16 33 H 0.09 2.03 8.01 -51.93 -0.42 1.61 16 34 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 36 H 0.08 1.79 7.14 -51.93 -0.37 1.42 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.46 6.78 -51.93 -0.35 1.10 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -31.17 338.42 -7.87 -39.04 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.71 Total: 6.78 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.23 Total: -2.20 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.06 Total: -50.78 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.18 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.17 -7.87 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519554720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.010 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds