Wall clock time and date at job start Tue Mar 31 2020 07:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36881 * 126.40095 * 2 1 4 4 C 1.34667 * 106.82397 * 179.97438 * 3 2 1 5 5 N 1.34138 * 108.01542 * 359.77330 * 4 3 2 6 6 C 1.30493 * 109.25652 * 0.37293 * 5 4 3 7 7 C 1.50704 * 125.64933 * 179.88899 * 6 5 4 8 8 C 1.52999 * 109.47044 * 269.69451 * 7 6 5 9 9 C 1.50704 * 109.47044 * 179.97438 * 8 7 6 10 10 O 1.21297 * 119.99792 * 353.74924 * 9 8 7 11 11 N 1.34766 * 120.00484 * 173.74834 * 9 8 7 12 12 C 1.37112 * 119.99886 * 5.46251 * 11 9 8 13 13 H 1.07996 * 120.00023 * 227.21127 * 12 11 9 14 14 C 1.38946 * 119.99549 * 47.20813 * 12 11 9 15 15 N 1.31416 * 119.99529 * 203.27120 * 14 12 11 16 16 Si 1.86799 * 120.00482 * 23.27176 * 14 12 11 17 17 H 1.48497 * 109.47082 * 89.48302 * 16 14 12 18 18 H 1.48503 * 109.47172 * 209.48748 * 16 14 12 19 19 H 1.48501 * 109.46932 * 329.48138 * 16 14 12 20 20 C 1.46499 * 120.00625 * 185.46209 * 11 9 8 21 21 C 1.54262 * 110.03395 * 240.40447 * 20 11 9 22 22 C 1.54962 * 104.16207 * 217.13467 * 21 20 11 23 23 C 1.54891 * 102.77883 * 37.88347 * 22 21 20 24 24 C 1.53871 * 110.03572 * 123.18639 * 20 11 9 25 25 H 1.09002 * 109.47313 * 270.02864 * 1 2 3 26 26 H 1.09005 * 109.47117 * 30.03109 * 1 2 3 27 27 H 1.09004 * 109.47558 * 150.02894 * 1 2 3 28 28 H 1.08002 * 126.58534 * 0.02562 * 3 2 1 29 29 H 1.07998 * 125.99222 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.46764 * 149.69327 * 7 6 5 31 31 H 1.09001 * 109.46990 * 29.69416 * 7 6 5 32 32 H 1.08993 * 109.47419 * 60.00379 * 8 7 6 33 33 H 1.09001 * 109.47198 * 299.99837 * 8 7 6 34 34 H 0.97009 * 119.99780 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.01507 * 1.79221 * 20 11 9 36 36 H 1.08999 * 110.48763 * 335.78035 * 21 20 11 37 37 H 1.08998 * 110.49107 * 98.42284 * 21 20 11 38 38 H 1.09001 * 110.72049 * 279.57398 * 22 21 20 39 39 H 1.09003 * 110.92894 * 156.29528 * 22 21 20 40 40 H 1.08996 * 110.48969 * 203.40556 * 23 22 21 41 41 H 1.09007 * 110.59456 * 80.81784 * 23 22 21 42 42 H 1.09004 * 110.03030 * 238.57733 * 24 20 11 43 43 H 1.09005 * 110.03161 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6505 0.0006 5 7 3.5095 -0.6904 0.0060 6 6 2.2663 -1.0870 0.0007 7 6 1.8018 -2.5207 0.0018 8 6 1.6444 -3.0068 -1.4404 9 6 1.1805 -4.4407 -1.4394 10 8 1.1029 -5.0522 -0.3947 11 7 0.8518 -5.0435 -2.5990 12 6 1.0452 -4.3913 -3.7895 13 1 0.2586 -4.3731 -4.5292 14 6 2.2533 -3.7540 -4.0441 15 7 2.3086 -2.7767 -4.9210 16 14 3.7989 -4.2861 -3.1400 17 1 4.4764 -5.3613 -3.9083 18 1 4.7147 -3.1255 -2.9998 19 1 3.4343 -4.7944 -1.7932 20 6 0.2878 -6.3955 -2.5877 21 6 1.2026 -7.3563 -3.3750 22 6 0.2182 -8.3117 -4.0957 23 6 -0.9437 -7.3687 -4.4956 24 6 -1.0763 -6.4036 -3.2995 25 1 -0.3634 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9612 2.1345 0.0004 29 1 4.4368 1.2611 0.0011 30 1 0.8432 -2.5916 0.5158 31 1 2.5365 -3.1403 0.5159 32 1 2.6029 -2.9359 -1.9544 33 1 0.9097 -2.3872 -1.9546 34 1 3.1519 -2.3315 -5.0985 35 1 0.1754 -6.7443 -1.5612 36 1 1.7996 -6.8050 -4.1016 37 1 1.8467 -7.9132 -2.6946 38 1 -0.1317 -9.0891 -3.4164 39 1 0.6798 -8.7523 -4.9794 40 1 -1.8647 -7.9351 -4.6329 41 1 -0.6960 -6.8190 -5.4037 42 1 -1.8507 -6.7571 -2.6186 43 1 -1.3190 -5.4015 -3.6530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519554720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:51 Heat of formation + Delta-G solvation = 9.944383 kcal Electronic energy + Delta-G solvation = -24325.022903 eV Core-core repulsion = 20984.590914 eV Total energy + Delta-G solvation = -3340.431989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.05158 -41.14757 -38.58721 -36.07888 -35.01545 -34.58580 -33.72770 -30.21898 -29.51308 -28.73559 -27.84275 -26.61985 -25.43635 -22.31657 -21.60060 -21.43898 -21.08722 -20.61074 -18.95564 -17.88920 -17.71821 -17.49993 -16.66824 -16.40718 -16.04780 -15.83176 -15.44255 -15.26590 -14.96863 -14.55869 -14.30541 -14.09593 -13.96330 -13.89214 -13.61069 -13.44605 -13.22163 -12.88011 -12.67521 -12.57244 -12.46957 -12.15816 -11.88740 -11.85182 -11.70158 -11.44914 -11.36029 -11.01262 -10.97163 -10.59449 -10.53440 -9.51712 -9.31367 -8.60401 -6.22868 1.05783 1.10470 1.24794 1.30041 1.82380 1.91490 2.08234 2.12521 2.64746 2.86311 3.46149 3.79062 3.82589 3.87988 3.96383 4.08000 4.13966 4.15997 4.27573 4.41178 4.50584 4.58530 4.61428 4.64828 4.67707 4.70222 4.74940 4.76775 4.88580 4.91474 5.01844 5.03611 5.14252 5.25178 5.34735 5.37404 5.46996 5.58614 5.64985 5.84552 5.88397 6.22497 6.45436 6.93220 7.15340 7.34297 7.79101 8.51831 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.005346 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.203377 B = 5236.736167 C = 5686.694111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.454 5.454 3 C -0.042 4.042 4 C -0.064 4.064 5 N -0.539 5.539 6 C 0.190 3.810 7 C -0.010 4.010 8 C -0.105 4.105 9 C 0.485 3.515 10 O -0.614 6.614 11 N -0.468 5.468 12 C -0.326 4.326 13 H 0.089 0.911 14 C 0.062 3.938 15 N -0.876 5.876 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.119 3.881 21 C -0.135 4.135 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.121 4.121 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.219 0.781 29 H 0.187 0.813 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.277 0.723 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 2.776 4.984 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.136 5.136 3 C -0.176 4.176 4 C -0.211 4.211 5 N -0.259 5.259 6 C -0.073 4.073 7 C -0.049 4.049 8 C -0.146 4.146 9 C 0.276 3.724 10 O -0.501 6.501 11 N -0.188 5.188 12 C -0.454 4.454 13 H 0.107 0.893 14 C -0.144 4.144 15 N -0.512 5.512 16 Si 0.712 3.288 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.194 1.194 20 C 0.015 3.985 21 C -0.173 4.173 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.159 4.159 25 H 0.118 0.882 26 H 0.133 0.867 27 H 0.100 0.900 28 H 0.236 0.764 29 H 0.204 0.796 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.607 2.107 5.368 8.770 hybrid contribution 0.886 0.598 0.018 1.069 sum -5.721 2.705 5.386 8.310 Atomic orbital electron populations 1.22408 0.74254 1.06076 1.05278 1.45548 1.09149 1.05906 1.53033 1.23323 0.90453 0.93815 1.09985 1.22782 0.98501 0.90342 1.09470 1.70156 1.20184 1.14289 1.21312 1.23089 0.86134 0.91415 1.06637 1.19616 1.02684 0.86439 0.96178 1.21418 1.01761 0.94499 0.96916 1.20618 0.79438 0.88962 0.83404 1.90498 1.59625 1.67407 1.32527 1.43943 1.56921 1.13200 1.04749 1.18618 0.99776 1.31546 0.95451 0.89320 1.25712 0.98684 0.94629 0.95380 1.69771 1.27753 1.19156 1.34501 0.86809 0.83063 0.78609 0.80288 1.20522 1.21250 1.19405 1.21943 0.94166 0.82877 0.99467 1.22690 0.98445 0.97106 0.99106 1.22403 0.95304 0.96870 1.00100 1.22249 0.99007 0.96647 0.97037 1.22341 0.95410 1.00343 0.97804 0.88225 0.86746 0.89968 0.76438 0.79630 0.88164 0.90621 0.92453 0.88942 0.91244 0.90669 0.92555 0.92679 0.89914 0.90645 0.89467 0.92712 0.90550 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 10.79 127.77 1.38 2.56 16 2 N -0.45 -13.17 3.15 -537.61 -1.69 -14.86 16 3 C -0.04 -1.09 11.58 83.09 0.96 -0.12 16 4 C -0.06 -2.04 11.87 83.52 0.99 -1.05 16 5 N -0.54 -22.24 11.25 -188.12 -2.12 -24.35 16 6 C 0.19 7.18 7.16 138.13 0.99 8.17 16 7 C -0.01 -0.38 4.62 29.85 0.14 -0.25 16 8 C -0.11 -4.78 3.67 29.85 0.11 -4.67 16 9 C 0.49 23.49 5.20 87.66 0.46 23.94 16 10 O -0.61 -31.20 15.35 -3.08 -0.05 -31.25 16 11 N -0.47 -21.99 1.99 -609.39 -1.21 -23.20 16 12 C -0.33 -16.45 7.52 84.04 0.63 -15.82 16 13 H 0.09 4.70 7.20 -2.91 -0.02 4.67 16 14 C 0.06 3.28 4.21 84.92 0.36 3.64 16 15 N -0.88 -48.00 13.96 21.66 0.30 -47.70 16 16 Si 0.89 45.09 24.58 68.60 1.69 46.77 16 17 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 19 H -0.27 -14.27 5.46 99.48 0.54 -13.72 16 20 C 0.12 4.78 3.28 45.71 0.15 4.93 16 21 C -0.14 -5.02 6.42 31.69 0.20 -4.82 16 22 C -0.11 -3.03 6.91 31.91 0.22 -2.81 16 23 C -0.11 -3.15 6.83 31.67 0.22 -2.94 16 24 C -0.12 -4.04 6.21 31.32 0.19 -3.84 16 25 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.08 1.78 7.66 -2.38 -0.02 1.76 16 28 H 0.22 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.19 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.10 3.46 7.70 -2.39 -0.02 3.44 16 31 H 0.08 3.27 8.03 -2.39 -0.02 3.25 16 32 H 0.06 2.90 3.15 -2.39 -0.01 2.89 16 33 H 0.09 4.12 8.01 -2.39 -0.02 4.10 16 34 H 0.28 14.66 8.31 -92.70 -0.77 13.89 16 35 H 0.08 3.14 6.96 -2.39 -0.02 3.12 16 36 H 0.06 2.40 7.14 -2.39 -0.02 2.39 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.06 2.13 6.78 -2.38 -0.02 2.11 16 Total: -1.00 -69.37 338.42 4.75 -64.63 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.83 Total: 23.04 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 7.00 Total: 6.92 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.72 Total: -110.11 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.05 Total: -31.25 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.69 Total: 46.77 kcal Total: -69.37 4.75 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519554720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.571 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds