Wall clock time and date at job start Tue Mar 31 2020 07:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35046 * 126.39792 * 2 1 4 4 N 1.30501 * 108.69933 * 180.26675 * 3 2 1 5 5 C 1.34123 * 109.25597 * 359.76732 * 4 3 2 6 6 C 1.34669 * 108.02184 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.59384 * 179.97438 * 6 5 4 8 8 C 1.53046 * 109.45893 * 274.99970 * 7 6 5 9 9 C 1.53159 * 109.32667 * 181.38373 * 8 7 6 10 10 N 1.46928 * 108.76987 * 305.35456 * 9 8 7 11 11 C 1.34773 * 120.63179 * 233.59029 * 10 9 8 12 12 O 1.21283 * 119.99742 * 180.02562 * 11 10 9 13 13 C 1.50697 * 120.00193 * 0.02562 * 11 10 9 14 14 C 1.52995 * 109.47391 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47204 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99615 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99829 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99812 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00329 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47408 * 89.99301 * 19 17 15 21 21 H 1.48498 * 109.47078 * 209.99428 * 19 17 15 22 22 H 1.48504 * 109.46941 * 329.99383 * 19 17 15 23 23 C 1.46931 * 118.73792 * 53.61250 * 10 9 8 24 24 C 1.53039 * 109.45760 * 35.05334 * 7 6 5 25 25 H 1.08998 * 109.47516 * 270.12667 * 1 2 3 26 26 H 1.09002 * 109.47388 * 30.12376 * 1 2 3 27 27 H 1.09000 * 109.47499 * 150.12373 * 1 2 3 28 28 H 1.08009 * 125.64811 * 0.06872 * 3 2 1 29 29 H 1.07993 * 125.99139 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.46114 * 155.02572 * 7 6 5 31 31 H 1.08996 * 109.49379 * 301.31994 * 8 7 6 32 32 H 1.08994 * 109.49581 * 61.41763 * 8 7 6 33 33 H 1.08999 * 109.58991 * 185.56748 * 9 8 7 34 34 H 1.09002 * 109.70860 * 65.20753 * 9 8 7 35 35 H 1.09000 * 109.47385 * 300.00687 * 13 11 10 36 36 H 1.09004 * 109.46735 * 60.00322 * 13 11 10 37 37 H 1.08995 * 109.47352 * 300.00151 * 14 13 11 38 38 H 1.09004 * 109.46985 * 60.00394 * 14 13 11 39 39 H 0.96997 * 119.99850 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58425 * 186.61021 * 23 10 9 41 41 H 1.08999 * 109.58795 * 66.17471 * 23 10 9 42 42 H 1.08997 * 109.49901 * 298.57553 * 24 7 6 43 43 H 1.08996 * 109.49878 * 58.64576 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1017 0.0029 7 6 1.8363 -2.5428 0.0064 8 6 1.7993 -3.0681 -1.4306 9 6 1.3178 -4.5220 -1.4266 10 7 2.1737 -5.3011 -0.5214 11 6 2.7840 -6.4237 -0.9500 12 8 3.4877 -7.0581 -0.1929 13 6 2.5920 -6.8906 -2.3699 14 6 3.3868 -8.1783 -2.5952 15 6 3.1953 -8.6449 -4.0154 16 1 2.5696 -8.0792 -4.6898 17 6 3.8197 -9.7933 -4.4539 18 7 3.6521 -10.2007 -5.6931 19 14 4.9025 -10.7713 -3.2875 20 1 4.0794 -11.7856 -2.5810 21 1 5.9725 -11.4526 -4.0594 22 1 5.5162 -9.8532 -2.2947 23 6 2.3513 -4.8332 0.8600 24 6 2.8213 -3.3753 0.8303 25 1 -0.3634 0.0023 1.0276 26 1 -0.3634 0.8889 -0.5158 27 1 -0.3634 -0.8911 -0.5119 28 1 1.9334 2.1145 0.0011 29 1 4.4367 -1.2611 -0.0078 30 1 0.8416 -2.6172 0.4459 31 1 1.1152 -2.4603 -2.0226 32 1 2.7988 -3.0170 -1.8624 33 1 1.3836 -4.9316 -2.4345 34 1 0.2849 -4.5662 -1.0810 35 1 1.5339 -7.0808 -2.5499 36 1 2.9446 -6.1207 -3.0563 37 1 4.4449 -7.9885 -2.4152 38 1 3.0337 -8.9480 -1.9089 39 1 4.0917 -11.0084 -6.0016 40 1 3.0993 -5.4480 1.3607 41 1 1.4031 -4.9006 1.3934 42 1 3.8111 -3.3215 0.3771 43 1 2.8650 -2.9859 1.8473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520891662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:54 Heat of formation + Delta-G solvation = 14.246676 kcal Electronic energy + Delta-G solvation = -23160.196655 eV Core-core repulsion = 19819.951227 eV Total energy + Delta-G solvation = -3340.245427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.41099 -39.93286 -37.46004 -34.35467 -33.67532 -33.47035 -31.69377 -30.84934 -29.20721 -27.32881 -26.41532 -24.92928 -23.42376 -22.16003 -21.44617 -20.62755 -19.74946 -18.57558 -17.54767 -17.14068 -16.20542 -16.03104 -15.49254 -15.34316 -15.13440 -14.28851 -14.19825 -14.05079 -13.95474 -13.66054 -13.42969 -13.22420 -13.14241 -13.06996 -12.54936 -12.45393 -12.29931 -11.59660 -11.46508 -11.39076 -11.01215 -10.95940 -10.85460 -10.15070 -10.10856 -10.03334 -9.83667 -9.77586 -9.23038 -9.13850 -8.57362 -8.53769 -8.49022 -6.02704 -4.01418 1.75842 2.45867 2.95743 3.07362 3.17801 3.38601 3.45275 3.56459 4.20311 4.28029 4.43232 4.47026 4.51608 4.57975 4.66588 4.87164 4.88101 4.96124 5.07441 5.11149 5.15509 5.32948 5.36080 5.38753 5.47526 5.60526 5.62851 5.66813 5.87624 5.89367 5.96297 6.04852 6.08058 6.21165 6.51556 6.61098 6.71992 6.90942 7.36856 7.44079 7.61290 7.79794 7.84609 8.49258 8.61691 9.00079 9.60534 11.10130 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.003028 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.660712 B = 9243.866338 C = 9418.083602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.461 5.461 3 C 0.174 3.826 4 N -0.493 5.493 5 C -0.022 4.022 6 C -0.015 4.015 7 C -0.008 4.008 8 C -0.125 4.125 9 C 0.109 3.891 10 N -0.624 5.624 11 C 0.514 3.486 12 O -0.539 6.539 13 C -0.121 4.121 14 C 0.001 3.999 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.111 3.889 24 C -0.121 4.121 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.203 0.797 29 H 0.168 0.832 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 22.562 13.163 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.144 5.144 3 C -0.108 4.108 4 N -0.211 5.211 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.028 4.028 8 C -0.164 4.164 9 C -0.014 4.014 10 N -0.360 5.360 11 C 0.304 3.696 12 O -0.415 6.415 13 C -0.161 4.161 14 C -0.037 4.037 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.011 4.011 24 C -0.160 4.160 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.219 0.781 29 H 0.185 0.815 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.126 22.588 13.433 27.820 hybrid contribution -0.353 -0.819 0.443 0.996 sum -9.480 21.769 13.876 27.501 Atomic orbital electron populations 1.22042 0.76800 1.04798 1.03589 1.45305 1.07488 1.06751 1.54887 1.24915 0.85723 0.93358 1.06780 1.70284 1.19389 1.12145 1.19259 1.22071 0.95910 0.90903 1.08087 1.21241 0.91258 0.89403 1.11006 1.19561 0.99565 0.86766 0.96898 1.21993 1.03244 0.95753 0.95412 1.21707 0.93604 0.90571 0.95549 1.48265 1.49798 1.26055 1.11833 1.21550 0.77876 0.78889 0.91271 1.90643 1.38335 1.55029 1.57518 1.21688 1.03011 1.01257 0.90129 1.19378 0.95655 0.91387 0.97247 1.21106 1.30428 1.09577 0.95114 0.90971 1.24972 0.96124 0.97166 0.94981 1.69914 1.44240 1.24140 1.15994 0.86796 0.80784 0.80582 0.81406 1.20254 1.21450 1.18496 1.21495 1.01673 0.94169 0.83811 1.21931 0.99342 0.94444 1.00276 0.90557 0.89361 0.89523 0.78053 0.81523 0.90604 0.91023 0.90503 0.88534 0.91638 0.89710 0.89618 0.95819 0.96299 0.92724 0.88705 0.92043 0.90675 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 10.83 59.84 0.65 0.90 16 2 N -0.46 -3.57 3.15 -121.36 -0.38 -3.95 16 3 C 0.17 1.53 12.56 -90.37 -1.14 0.40 16 4 N -0.49 -6.02 11.25 -14.66 -0.16 -6.18 16 5 C -0.02 -0.25 11.07 -17.81 -0.20 -0.45 16 6 C -0.01 -0.14 5.87 -81.60 -0.48 -0.62 16 7 C -0.01 -0.07 2.23 -91.73 -0.20 -0.27 16 8 C -0.13 -1.09 5.34 -26.63 -0.14 -1.23 16 9 C 0.11 1.09 6.34 -3.73 -0.02 1.06 16 10 N -0.62 -8.32 2.97 -172.78 -0.51 -8.83 16 11 C 0.51 9.34 7.70 -10.99 -0.08 9.26 16 12 O -0.54 -11.90 15.40 5.55 0.09 -11.82 16 13 C -0.12 -2.33 3.98 -27.89 -0.11 -2.44 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 15 C -0.52 -14.96 9.66 -34.44 -0.33 -15.30 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 19 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 23 C 0.11 1.26 6.43 -3.70 -0.02 1.23 16 24 C -0.12 -1.12 4.93 -26.61 -0.13 -1.25 16 25 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.09 0.27 7.69 -51.93 -0.40 -0.13 16 28 H 0.20 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.17 1.80 7.44 -52.49 -0.39 1.41 16 30 H 0.08 0.53 7.65 -51.93 -0.40 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 36 H 0.09 1.53 7.69 -51.93 -0.40 1.13 16 37 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 38 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.79 7.39 -51.93 -0.38 0.40 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -36.61 345.47 -8.86 -45.46 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.79 Total: -3.79 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.41 Total: -6.83 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.29 Total: -46.22 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.61 -8.86 -45.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520891662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.711 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds