Wall clock time and date at job start Tue Mar 31 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47251 * 2 1 4 4 C 1.46499 * 119.99907 * 277.46953 * 3 2 1 5 5 C 1.50704 * 109.46852 * 269.99288 * 4 3 2 6 6 H 1.08004 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99979 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47433 * 60.00446 * 9 7 5 11 11 H 1.48504 * 109.46892 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47159 * 300.00088 * 9 7 5 13 13 C 1.34774 * 120.00210 * 97.46490 * 3 2 1 14 14 O 1.21549 * 120.00254 * 185.68545 * 13 3 2 15 15 C 1.47843 * 119.99711 * 5.67483 * 13 3 2 16 16 C 1.40023 * 120.56526 * 315.00791 * 15 13 3 17 17 C 1.38350 * 118.29351 * 179.70017 * 16 15 13 18 18 C 1.38355 * 119.29918 * 0.27663 * 17 16 15 19 19 C 1.50707 * 119.45758 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.46833 * 94.99960 * 19 18 17 21 21 C 1.46902 * 110.99974 * 66.04951 * 20 19 18 22 22 C 1.46898 * 110.99530 * 189.99815 * 20 19 18 23 23 N 1.31929 * 121.08185 * 359.97438 * 18 17 16 24 24 C 1.31686 * 121.88000 * 0.02562 * 23 18 17 25 25 H 1.09000 * 109.47083 * 69.02051 * 1 2 3 26 26 H 1.09004 * 109.46818 * 189.01553 * 1 2 3 27 27 H 1.08997 * 109.47208 * 309.01539 * 1 2 3 28 28 H 1.09004 * 109.47023 * 240.00067 * 2 1 3 29 29 H 1.08999 * 109.47705 * 120.00157 * 2 1 3 30 30 H 1.08995 * 109.47240 * 29.99117 * 4 3 2 31 31 H 1.08996 * 109.47353 * 149.99720 * 4 3 2 32 32 H 0.97002 * 120.00335 * 179.97438 * 8 7 5 33 33 H 1.08006 * 120.84997 * 359.97111 * 16 15 13 34 34 H 1.07993 * 120.35124 * 180.24868 * 17 16 15 35 35 H 1.09007 * 109.46900 * 214.99624 * 19 18 17 36 36 H 1.09001 * 109.46918 * 334.99981 * 19 18 17 37 37 H 1.08993 * 109.47501 * 59.99879 * 21 20 19 38 38 H 1.09005 * 109.46585 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46922 * 299.99094 * 21 20 19 40 40 H 1.09004 * 109.47407 * 59.99929 * 22 20 19 41 41 H 1.09002 * 109.47120 * 180.02562 * 22 20 19 42 42 H 1.09003 * 109.47879 * 299.99799 * 22 20 19 43 43 H 1.07999 * 119.71693 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1070 2.1268 -1.2580 5 6 3.4657 1.9129 -1.8739 6 1 4.1905 1.2841 -1.3781 7 6 3.7831 2.5191 -3.0709 8 7 2.9004 3.2843 -3.6749 9 14 5.4670 2.2534 -3.8347 10 1 5.6669 0.8063 -4.1014 11 1 5.5570 3.0092 -5.1098 12 1 6.5160 2.7340 -2.8998 13 6 2.3859 1.9660 1.1573 14 8 2.6925 3.1421 1.1734 15 6 2.4161 1.1771 2.4072 16 6 1.3600 0.3169 2.7319 17 6 1.4399 -0.4038 3.9102 18 6 2.5472 -0.2487 4.7250 19 6 2.6376 -1.0315 6.0097 20 7 3.4100 -2.2600 5.7811 21 6 4.8099 -1.9499 5.4616 22 6 3.3212 -3.1605 6.9383 23 7 3.5253 0.5733 4.3959 24 6 3.4954 1.2805 3.2855 25 1 -0.3633 0.3679 -0.9595 26 1 -0.3633 -1.0150 0.1610 27 1 -0.3633 0.6469 0.7984 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.3373 1.7741 -1.9444 31 1 1.9601 3.1889 -1.0620 32 1 3.1239 3.7111 -4.5168 33 1 0.5071 0.2153 2.0772 34 1 0.6461 -1.0799 4.1912 35 1 3.1330 -0.4269 6.7695 36 1 1.6346 -1.2907 6.3485 37 1 5.2595 -1.4036 6.2908 38 1 5.3589 -2.8771 5.2967 39 1 4.8500 -1.3391 4.5597 40 1 2.2790 -3.4298 7.1100 41 1 3.9022 -4.0618 6.7427 42 1 3.7169 -2.6581 7.8210 43 1 4.3152 1.9432 3.0506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630824799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:46 Heat of formation + Delta-G solvation = 18.325071 kcal Electronic energy + Delta-G solvation = -23338.300417 eV Core-core repulsion = 19998.231842 eV Total energy + Delta-G solvation = -3340.068575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62893 -38.79241 -37.19694 -35.52081 -33.16886 -32.22840 -31.89746 -30.21519 -28.08806 -27.73956 -26.83329 -24.06155 -23.35917 -23.09216 -22.40490 -21.39633 -18.99136 -16.93154 -16.68063 -16.58761 -16.34783 -15.82227 -15.38320 -15.15697 -14.67834 -14.56467 -14.15283 -13.92006 -13.82325 -13.37833 -12.92122 -12.66613 -12.44873 -12.38336 -12.24708 -12.10146 -11.92501 -11.82892 -11.71209 -11.55635 -11.21478 -10.95516 -10.86377 -10.59186 -10.16677 -9.78115 -9.64037 -9.61163 -9.11775 -8.86425 -8.58909 -8.45052 -7.74052 -6.06595 -4.11831 0.87935 1.27824 3.22841 3.31483 3.35808 3.38935 3.58656 3.87559 4.04953 4.27588 4.43295 4.54096 4.84127 4.89891 4.95038 5.06214 5.08173 5.18640 5.27047 5.28922 5.29189 5.43850 5.48877 5.51493 5.56291 5.57907 5.67634 5.75440 5.92942 5.94965 6.05921 6.16111 6.20768 6.45314 6.61227 6.69904 6.76597 7.02137 7.40360 7.47778 7.89285 7.94404 8.19787 8.31896 8.83061 8.98956 9.53393 11.01474 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003745 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.584187 B = 7474.191660 C = 7953.487392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 N -0.586 5.586 4 C 0.246 3.754 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.551 3.449 14 O -0.533 6.533 15 C -0.163 4.163 16 C -0.062 4.062 17 C -0.160 4.160 18 C 0.137 3.863 19 C 0.104 3.896 20 N -0.542 5.542 21 C 0.024 3.976 22 C 0.025 3.975 23 N -0.483 5.483 24 C 0.148 3.852 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 -13.040 17.809 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.336 3.664 14 O -0.411 6.411 15 C -0.168 4.168 16 C -0.088 4.088 17 C -0.180 4.180 18 C -0.001 4.001 19 C -0.024 4.024 20 N -0.267 5.267 21 C -0.124 4.124 22 C -0.123 4.123 23 N -0.192 5.192 24 C -0.010 4.010 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.468 -12.463 17.769 21.979 hybrid contribution 0.549 0.156 -0.490 0.752 sum -2.920 -12.307 17.279 21.414 Atomic orbital electron populations 1.22348 0.96654 1.01460 1.02809 1.21668 0.93645 0.84353 1.03152 1.48195 1.61737 1.13340 1.08432 1.19324 0.97116 0.92836 0.78008 1.21399 0.99462 1.30169 1.05901 0.92438 1.24925 0.97375 0.94829 0.96842 1.69919 1.34606 1.31234 1.17509 0.86551 0.84231 0.78199 0.78418 1.20210 1.21142 1.20119 1.17998 0.78646 0.86815 0.82920 1.90771 1.48889 1.15566 1.85836 1.21291 0.97504 0.99880 0.98172 1.22350 0.98311 0.92120 0.96003 1.21801 0.99841 1.01234 0.95135 1.21100 0.90029 0.93159 0.95775 1.20986 0.99317 0.89556 0.92505 1.61977 1.12415 1.14234 1.38025 1.22441 0.87360 1.00928 1.01659 1.22390 1.02383 0.96610 0.90919 1.67525 1.27427 1.06625 1.17633 1.22841 0.96386 0.94224 0.87578 0.91454 0.91771 0.92506 0.89930 0.90940 0.94731 0.93576 0.92599 0.83036 0.84508 0.92813 0.89170 0.95310 0.91763 0.90359 0.91260 0.91160 0.95566 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.13 37.16 0.34 -1.93 16 2 C 0.10 1.55 5.60 -4.04 -0.02 1.53 16 3 N -0.59 -12.40 2.46 -176.18 -0.43 -12.84 16 4 C 0.25 6.37 5.22 -5.19 -0.03 6.34 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.55 11.77 7.30 -12.33 -0.09 11.68 16 14 O -0.53 -13.62 16.55 5.32 0.09 -13.53 16 15 C -0.16 -2.75 5.10 -104.82 -0.53 -3.29 16 16 C -0.06 -0.83 7.54 -38.87 -0.29 -1.13 16 17 C -0.16 -1.84 9.70 -39.50 -0.38 -2.23 16 18 C 0.14 1.72 5.70 -82.50 -0.47 1.25 16 19 C 0.10 1.03 5.27 -4.97 -0.03 1.00 16 20 N -0.54 -5.41 5.01 -252.71 -1.27 -6.68 16 21 C 0.02 0.25 9.25 60.07 0.56 0.81 16 22 C 0.03 0.18 9.57 60.06 0.57 0.76 16 23 N -0.48 -7.07 8.82 -9.13 -0.08 -7.15 16 24 C 0.15 2.40 10.86 -17.13 -0.19 2.21 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 28 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.07 1.05 5.08 -51.93 -0.26 0.79 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.15 1.82 3.75 -52.48 -0.20 1.63 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 36 H 0.09 0.68 7.96 -51.93 -0.41 0.27 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 39 H 0.08 1.00 6.34 -51.93 -0.33 0.67 16 40 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 41 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.16 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -33.00 352.39 -8.18 -41.17 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.52 Total: -0.78 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.98 Total: 3.39 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -1.04 Total: -52.34 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.00 -8.18 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630824799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.497 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds