Wall clock time and date at job start Tue Mar 31 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47251 * 2 1 4 4 C 1.46499 * 119.99907 * 277.46953 * 3 2 1 5 5 C 1.50704 * 109.46852 * 269.99288 * 4 3 2 6 6 H 1.08004 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99974 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99979 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47433 * 60.00446 * 9 7 5 11 11 H 1.48504 * 109.46892 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47159 * 300.00088 * 9 7 5 13 13 C 1.34774 * 120.00210 * 97.46490 * 3 2 1 14 14 O 1.21549 * 120.00254 * 185.68545 * 13 3 2 15 15 C 1.47843 * 119.99711 * 5.67483 * 13 3 2 16 16 C 1.40023 * 120.56526 * 315.00791 * 15 13 3 17 17 C 1.38350 * 118.29351 * 179.70017 * 16 15 13 18 18 C 1.38355 * 119.29918 * 0.27663 * 17 16 15 19 19 C 1.50707 * 119.45758 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.46833 * 94.99960 * 19 18 17 21 21 C 1.46902 * 110.99974 * 66.04951 * 20 19 18 22 22 C 1.46898 * 110.99530 * 189.99815 * 20 19 18 23 23 N 1.31929 * 121.08185 * 359.97438 * 18 17 16 24 24 C 1.31686 * 121.88000 * 0.02562 * 23 18 17 25 25 H 1.09000 * 109.47083 * 69.02051 * 1 2 3 26 26 H 1.09004 * 109.46818 * 189.01553 * 1 2 3 27 27 H 1.08997 * 109.47208 * 309.01539 * 1 2 3 28 28 H 1.09004 * 109.47023 * 240.00067 * 2 1 3 29 29 H 1.08999 * 109.47705 * 120.00157 * 2 1 3 30 30 H 1.08995 * 109.47240 * 29.99117 * 4 3 2 31 31 H 1.08996 * 109.47353 * 149.99720 * 4 3 2 32 32 H 0.97002 * 120.00335 * 179.97438 * 8 7 5 33 33 H 1.08006 * 120.84997 * 359.97111 * 16 15 13 34 34 H 1.07993 * 120.35124 * 180.24868 * 17 16 15 35 35 H 1.09007 * 109.46900 * 214.99624 * 19 18 17 36 36 H 1.09001 * 109.46918 * 334.99981 * 19 18 17 37 37 H 1.08993 * 109.47501 * 59.99879 * 21 20 19 38 38 H 1.09005 * 109.46585 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46922 * 299.99094 * 21 20 19 40 40 H 1.09004 * 109.47407 * 59.99929 * 22 20 19 41 41 H 1.09002 * 109.47120 * 180.02562 * 22 20 19 42 42 H 1.09003 * 109.47879 * 299.99799 * 22 20 19 43 43 H 1.07999 * 119.71693 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1070 2.1268 -1.2580 5 6 3.4657 1.9129 -1.8739 6 1 4.1905 1.2841 -1.3781 7 6 3.7831 2.5191 -3.0709 8 7 2.9004 3.2843 -3.6749 9 14 5.4670 2.2534 -3.8347 10 1 5.6669 0.8063 -4.1014 11 1 5.5570 3.0092 -5.1098 12 1 6.5160 2.7340 -2.8998 13 6 2.3859 1.9660 1.1573 14 8 2.6925 3.1421 1.1734 15 6 2.4161 1.1771 2.4072 16 6 1.3600 0.3169 2.7319 17 6 1.4399 -0.4038 3.9102 18 6 2.5472 -0.2487 4.7250 19 6 2.6376 -1.0315 6.0097 20 7 3.4100 -2.2600 5.7811 21 6 4.8099 -1.9499 5.4616 22 6 3.3212 -3.1605 6.9383 23 7 3.5253 0.5733 4.3959 24 6 3.4954 1.2805 3.2855 25 1 -0.3633 0.3679 -0.9595 26 1 -0.3633 -1.0150 0.1610 27 1 -0.3633 0.6469 0.7984 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.3373 1.7741 -1.9444 31 1 1.9601 3.1889 -1.0620 32 1 3.1239 3.7111 -4.5168 33 1 0.5071 0.2153 2.0772 34 1 0.6461 -1.0799 4.1912 35 1 3.1330 -0.4269 6.7695 36 1 1.6346 -1.2907 6.3485 37 1 5.2595 -1.4036 6.2908 38 1 5.3589 -2.8771 5.2967 39 1 4.8500 -1.3391 4.5597 40 1 2.2790 -3.4298 7.1100 41 1 3.9022 -4.0618 6.7427 42 1 3.7169 -2.6581 7.8210 43 1 4.3152 1.9432 3.0506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630824799.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:46 Heat of formation + Delta-G solvation = -4.530520 kcal Electronic energy + Delta-G solvation = -23339.291510 eV Core-core repulsion = 19998.231842 eV Total energy + Delta-G solvation = -3341.059668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86444 -40.25285 -38.03272 -37.19189 -35.09007 -33.63134 -32.96330 -31.66424 -29.57453 -28.46009 -28.22067 -25.61570 -24.58211 -24.37576 -23.77872 -22.29408 -20.53021 -18.68361 -18.30172 -17.90038 -17.63641 -16.98989 -16.60251 -16.31071 -16.03581 -15.81931 -15.50444 -15.14985 -15.12589 -14.55808 -14.26794 -14.13522 -13.68528 -13.56845 -13.31657 -13.27694 -13.20696 -13.06760 -12.71380 -12.64276 -12.56964 -12.48432 -12.45187 -12.20055 -12.05922 -11.77260 -11.10143 -10.74180 -10.65470 -10.45353 -10.09853 -9.53957 -9.33306 -8.25092 -6.40195 -0.27871 0.19996 1.35516 1.39721 1.46931 1.71706 2.18142 2.38967 2.62756 3.04472 3.08006 3.32239 3.53577 3.62774 3.81237 4.04771 4.06561 4.22644 4.31209 4.36017 4.37633 4.51228 4.57396 4.65642 4.69230 4.74925 4.80892 4.87316 4.92372 5.00354 5.02524 5.06286 5.09434 5.10757 5.19814 5.37984 5.51877 5.57752 5.78851 5.95372 6.02434 6.07953 6.60175 6.69025 6.85596 7.19053 7.34862 8.82097 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003745 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.584187 B = 7474.191660 C = 7953.487392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 N -0.590 5.590 4 C 0.262 3.738 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.278 1.278 13 C 0.546 3.454 14 O -0.592 6.592 15 C -0.183 4.183 16 C -0.054 4.054 17 C -0.142 4.142 18 C 0.138 3.862 19 C 0.105 3.895 20 N -0.551 5.551 21 C 0.027 3.973 22 C 0.025 3.975 23 N -0.492 5.492 24 C 0.135 3.865 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.000 1.000 32 H 0.268 0.732 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.050 0.950 36 H 0.124 0.876 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -16.359 19.576 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.032 4.032 3 N -0.320 5.320 4 C 0.141 3.859 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.334 3.666 14 O -0.473 6.473 15 C -0.189 4.189 16 C -0.079 4.079 17 C -0.162 4.162 18 C -0.001 4.001 19 C -0.023 4.023 20 N -0.276 5.276 21 C -0.121 4.121 22 C -0.122 4.122 23 N -0.201 5.201 24 C -0.022 4.022 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.048 0.952 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.187 0.813 34 H 0.201 0.799 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.417 -15.838 19.549 25.545 hybrid contribution 0.805 1.118 -0.921 1.657 sum -3.613 -14.721 18.628 24.016 Atomic orbital electron populations 1.22301 0.93748 1.04227 1.02195 1.21990 0.95975 0.81375 1.03822 1.48194 1.61823 1.15048 1.06912 1.18776 0.96187 0.90966 0.79950 1.21675 1.00304 1.30406 1.06419 0.92999 1.25831 1.01416 0.94302 0.97286 1.70034 1.36636 1.31881 1.17956 0.85484 0.78934 0.79012 0.77505 1.18463 1.20112 1.20375 1.18704 0.77146 0.86498 0.84264 1.90719 1.51382 1.18288 1.86960 1.20878 0.99776 1.01757 0.96447 1.22527 0.97358 0.91001 0.97061 1.22238 1.00200 1.00381 0.93352 1.21778 0.89494 0.92047 0.96757 1.21125 1.01191 0.89279 0.90683 1.61995 1.11654 1.14348 1.39579 1.22365 0.88403 1.00963 1.00420 1.22466 1.03758 0.96096 0.89923 1.67577 1.28651 1.07154 1.16768 1.22638 0.96241 0.94933 0.88434 0.93149 0.87401 0.91886 0.90827 0.88654 0.95227 0.98146 0.92261 0.81325 0.79949 0.93172 0.85804 0.95433 0.90744 0.92957 0.89444 0.90654 0.95174 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.13 71.98 0.66 -3.33 16 2 C 0.09 2.85 5.60 86.38 0.48 3.33 16 3 N -0.59 -25.92 2.46 -829.59 -2.04 -27.96 16 4 C 0.26 14.36 5.22 85.63 0.45 14.81 16 5 C -0.55 -32.21 9.39 25.60 0.24 -31.97 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 9 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.55 24.51 7.30 86.79 0.63 25.15 16 14 O -0.59 -32.57 16.55 -3.87 -0.06 -32.64 16 15 C -0.18 -6.24 5.10 -19.99 -0.10 -6.34 16 16 C -0.05 -1.31 7.54 22.73 0.17 -1.14 16 17 C -0.14 -2.67 9.70 22.32 0.22 -2.45 16 18 C 0.14 3.05 5.70 42.57 0.24 3.29 16 19 C 0.11 1.67 5.27 85.56 0.45 2.13 16 20 N -0.55 -9.14 5.01 -953.43 -4.78 -13.92 16 21 C 0.03 0.52 9.25 127.69 1.18 1.70 16 22 C 0.02 0.27 9.57 127.69 1.22 1.49 16 23 N -0.49 -14.13 8.82 -182.81 -1.61 -15.74 16 24 C 0.14 4.53 10.86 85.03 0.92 5.45 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.44 6.36 -2.39 -0.02 1.42 16 28 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 29 H 0.10 2.57 5.08 -2.39 -0.01 2.56 16 30 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 31 H 0.00 0.03 7.35 -2.39 -0.02 0.01 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.17 3.47 3.75 -2.91 -0.01 3.46 16 34 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.05 0.86 8.12 -2.38 -0.02 0.84 16 36 H 0.12 1.17 7.96 -2.39 -0.02 1.15 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 1.25 8.12 -2.38 -0.02 1.23 16 39 H 0.05 1.29 6.34 -2.39 -0.02 1.27 16 40 H 0.09 0.64 8.12 -2.38 -0.02 0.62 16 41 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 42 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.15 5.20 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -76.94 352.39 2.04 -74.90 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.00 Total: 10.77 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 7.23 Total: 13.21 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -8.14 Total: -113.61 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.06 Total: -32.64 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.94 2.04 -74.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630824799.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.369 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds