Wall clock time and date at job start Tue Mar 31 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47168 * 2 1 4 4 C 1.35534 * 125.67653 * 265.45287 * 3 2 1 5 5 C 1.35450 * 108.87078 * 180.12895 * 4 3 2 6 6 C 1.39830 * 107.86370 * 359.62638 * 5 4 3 7 7 C 1.37646 * 125.67833 * 85.16490 * 3 2 1 8 8 C 1.46671 * 126.23632 * 0.03785 * 7 3 2 9 9 O 1.21697 * 119.99956 * 354.68450 * 8 7 3 10 10 N 1.34781 * 120.00446 * 174.68518 * 8 7 3 11 11 C 1.46503 * 120.00266 * 185.01450 * 10 8 7 12 12 C 1.53000 * 109.46823 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47198 * 65.00148 * 12 11 10 14 14 N 1.46500 * 109.47001 * 304.99804 * 12 11 10 15 15 C 1.36944 * 119.99604 * 155.00379 * 14 12 11 16 16 H 1.08004 * 119.99960 * 359.97438 * 15 14 12 17 17 C 1.38810 * 119.99880 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99986 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99974 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47105 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47292 * 120.00171 * 19 17 15 22 22 H 1.48507 * 109.47159 * 240.00111 * 19 17 15 23 23 C 1.53006 * 109.46653 * 184.99821 * 12 11 10 24 24 C 1.52998 * 117.49909 * 248.74615 * 23 12 11 25 25 C 1.53000 * 117.49702 * 180.08457 * 23 12 11 26 26 H 1.09002 * 109.46984 * 60.00131 * 1 2 3 27 27 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46677 * 300.00187 * 1 2 3 29 29 H 1.09000 * 109.47328 * 239.99501 * 2 1 3 30 30 H 1.09002 * 109.46984 * 119.99869 * 2 1 3 31 31 H 1.07998 * 125.56280 * 359.97438 * 4 3 2 32 32 H 1.08005 * 126.06330 * 179.89392 * 5 4 3 33 33 H 1.08007 * 126.45296 * 180.20963 * 6 5 4 34 34 H 0.97005 * 119.99747 * 5.01363 * 10 8 7 35 35 H 1.08994 * 109.46887 * 300.00024 * 11 10 8 36 36 H 1.08997 * 109.46658 * 59.99981 * 11 10 8 37 37 H 0.96993 * 120.00450 * 335.00400 * 14 12 11 38 38 H 0.96999 * 119.99895 * 180.02562 * 18 17 15 39 39 H 1.09000 * 115.54894 * 34.42266 * 23 12 11 40 40 H 1.08997 * 117.49734 * 0.02562 * 24 23 12 41 41 H 1.09001 * 117.49772 * 145.02262 * 24 23 12 42 42 H 1.08998 * 117.49989 * 214.98052 * 25 23 12 43 43 H 1.09006 * 117.49476 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3641 2.0973 -1.0975 5 6 2.7698 3.3292 -0.7069 6 6 2.6675 3.3928 0.6862 7 6 2.1971 2.1695 1.1141 8 6 1.9353 1.7791 2.5035 9 8 1.4287 0.6998 2.7471 10 7 2.2557 2.6157 3.5105 11 6 2.0966 2.1831 4.9011 12 6 2.5271 3.3127 5.8390 13 1 1.8514 4.1599 5.7214 14 7 3.8928 3.7276 5.5089 15 6 4.3168 4.9931 5.8157 16 1 3.6443 5.6853 6.3006 17 6 5.6106 5.3865 5.5026 18 7 6.4300 4.5432 4.9112 19 14 6.1889 7.1129 5.9204 20 1 5.0853 7.8594 6.5761 21 1 7.3511 7.0363 6.8415 22 1 6.5897 7.8157 4.6751 23 6 2.4796 2.8195 7.2866 24 6 1.4078 3.4156 8.2012 25 6 2.8757 3.8097 8.3836 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.3252 1.7427 -2.1169 32 1 3.1078 4.1230 -1.3566 33 1 2.9115 4.2404 1.3096 34 1 2.5917 3.5044 3.3144 35 1 1.0516 1.9352 5.0871 36 1 2.7161 1.3046 5.0813 37 1 4.4966 3.1061 5.0731 38 1 7.3342 4.8180 4.6927 39 1 2.7424 1.7721 7.4352 40 1 0.7362 4.1589 7.7716 41 1 0.9656 2.7606 8.9519 42 1 3.3986 3.4138 9.2542 43 1 3.1705 4.8124 8.0739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752500183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:07 Heat of formation + Delta-G solvation = 44.932850 kcal Electronic energy + Delta-G solvation = -23381.490026 eV Core-core repulsion = 20042.575251 eV Total energy + Delta-G solvation = -3338.914775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22930 -38.82574 -37.43323 -34.79338 -34.04443 -33.27369 -31.05699 -29.41854 -29.23634 -27.61659 -23.97416 -23.53297 -22.80868 -21.72285 -21.43526 -20.27048 -19.86205 -19.01336 -17.79927 -17.10610 -15.71003 -15.39936 -15.34751 -15.02424 -14.57035 -14.38541 -14.23895 -13.83641 -13.58124 -13.46866 -13.14992 -12.94319 -12.35718 -12.26931 -12.14790 -12.03375 -11.89916 -11.36630 -11.23594 -11.14226 -10.87430 -10.85744 -10.70475 -10.08776 -9.93483 -9.74839 -9.49053 -9.29813 -8.98083 -8.67613 -8.59694 -8.01244 -7.04031 -5.80561 -3.10334 1.70613 2.79352 2.91459 3.40321 3.46443 3.48759 3.65721 3.77231 4.41664 4.60087 4.68853 4.98655 5.02728 5.12851 5.22780 5.23436 5.45693 5.47880 5.52087 5.54607 5.61291 5.64691 5.75771 5.81241 5.90300 6.00314 6.05348 6.06705 6.17445 6.25893 6.35568 6.42410 6.54785 6.60617 6.77504 6.85272 6.96752 6.99859 7.15327 7.35519 7.66468 7.97717 8.35943 8.57483 9.48397 10.02286 10.38447 11.41190 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014542 B = 0.004658 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.060197 B = 6010.362159 C = 7579.743063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.410 5.410 4 C 0.006 3.994 5 C -0.208 4.208 6 C -0.135 4.135 7 C -0.046 4.046 8 C 0.585 3.415 9 O -0.564 6.564 10 N -0.700 5.700 11 C 0.123 3.877 12 C 0.193 3.807 13 H 0.056 0.944 14 N -0.717 5.717 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.008 4.008 18 N -0.927 5.927 19 Si 0.902 3.098 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.156 4.156 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.413 0.587 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 -6.065 -8.217 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.084 5.084 4 C -0.129 4.129 5 C -0.232 4.232 6 C -0.162 4.162 7 C -0.160 4.160 8 C 0.372 3.628 9 O -0.446 6.446 10 N -0.351 5.351 11 C -0.002 4.002 12 C 0.082 3.918 13 H 0.074 0.926 14 N -0.357 5.357 15 C -0.369 4.369 16 H 0.089 0.911 17 C -0.205 4.205 18 N -0.575 5.575 19 Si 0.733 3.267 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.181 4.181 24 C -0.234 4.234 25 C -0.193 4.193 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.181 0.819 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.193 -7.019 -7.955 15.422 hybrid contribution 0.965 1.132 0.051 1.488 sum -10.229 -5.887 -7.905 14.204 Atomic orbital electron populations 1.22059 0.94224 1.02743 1.02866 1.21954 0.95874 0.79891 1.04479 1.44006 1.47639 1.11506 1.05241 1.21919 1.06326 0.93184 0.91436 1.20803 1.09662 0.97465 0.95257 1.21488 1.02803 0.96311 0.95560 1.20125 1.14773 0.93137 0.87922 1.16980 0.78144 0.84102 0.83551 1.90735 1.45413 1.23148 1.85280 1.45636 1.65408 1.18505 1.05503 1.21603 1.00722 0.98111 0.79739 1.20062 0.89134 0.93577 0.89038 0.92626 1.42459 1.08541 1.13657 1.71087 1.19196 0.95845 0.89203 1.32647 0.91077 1.24712 0.96610 0.97800 1.01345 1.69670 1.06735 1.34454 1.46627 0.86205 0.78500 0.84433 0.77545 1.20587 1.21966 1.21887 1.23025 1.02495 0.98016 0.94536 1.22962 0.92600 1.04186 1.03670 1.22783 0.95373 1.01648 0.99480 0.92629 0.91028 0.91208 0.89771 0.87889 0.81889 0.84244 0.83546 0.75002 0.91518 0.91791 0.78015 0.93523 0.89158 0.89530 0.90113 0.90236 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.17 37.16 0.38 -1.32 16 2 C 0.10 1.14 6.10 -4.04 -0.02 1.12 16 3 N -0.41 -5.66 2.76 -112.88 -0.31 -5.97 16 4 C 0.01 0.07 11.37 -16.91 -0.19 -0.12 16 5 C -0.21 -2.75 10.81 -39.98 -0.43 -3.18 16 6 C -0.14 -2.08 10.35 -39.12 -0.41 -2.49 16 7 C -0.05 -0.75 6.88 -81.99 -0.56 -1.32 16 8 C 0.58 10.32 7.77 -12.85 -0.10 10.22 16 9 O -0.56 -10.73 14.27 5.19 0.07 -10.65 16 10 N -0.70 -12.09 5.37 -61.62 -0.33 -12.42 16 11 C 0.12 2.10 5.22 -4.04 -0.02 2.08 16 12 C 0.19 3.55 2.70 -67.93 -0.18 3.37 16 13 H 0.06 1.04 7.84 -51.93 -0.41 0.64 16 14 N -0.72 -16.28 4.54 -53.42 -0.24 -16.52 16 15 C -0.24 -6.01 8.63 -15.06 -0.13 -6.14 16 16 H 0.07 1.76 6.91 -52.48 -0.36 1.40 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 19 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 C -0.16 -2.75 5.36 -90.62 -0.49 -3.23 16 24 C -0.20 -2.96 10.18 -26.69 -0.27 -3.23 16 25 C -0.16 -2.74 9.78 -26.69 -0.26 -3.00 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 29 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.10 1.38 6.73 -51.93 -0.35 1.03 16 31 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.15 2.21 7.45 -52.48 -0.39 1.82 16 34 H 0.41 7.28 7.04 -40.82 -0.29 6.99 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.39 9.66 7.80 -40.82 -0.32 9.35 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 40 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 LS Contribution 356.86 15.07 5.38 5.38 Total: -1.00 -29.68 356.86 -9.13 -38.81 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -6.61 Total: 18.49 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.79 Total: -7.56 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.16 Total: -60.90 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.68 -9.13 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752500183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.746 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds